| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2609406 | 53 (1.150) | 3 (0.070) | 3/236 | NT | 5.4% | intergenic (‑236/+325) | USA300HOU_RS13450/USA300HOU_RS13455 | hypothetical protein/putative lipoprotein |
| ? | USA300TCH1516_ALE | = 2609438 | 57 (1.360) | intergenic (‑268/+293) | USA300HOU_RS13450/USA300HOU_RS13455 | hypothetical protein/putative lipoprotein | |||||
GAATTTCCAAATAAATAAAGGGATTTGTGATGTATTTCACAAATTTATCACTATTTTGGAAAATTAAGAAATATTTAATTATATAAAAGTTTAATAAGTCAGAAAATATGATAAAATGTAGATGTTCTTTAGACATTAAAAGCTTCTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2609258‑2609406‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaagcttctaaTGTGATACAGGAACCTCATATTCCGTATCATGTTAGAAGCTTTTAATGTCTAAAGAACATCTACATTTTATCATATTTTCTGACTTATTAAACTTTTATATAATTAAATATTTCTTAATTTTCCAAAATAGTGATAAATT < USA300TCH1516_ALE/2609438‑2609299 GAATTTCCAAATAAATAAAGGGATTTGTGATGTATTTCACAAATTTATCACTATTTTGGAAAATTAAGAAATATTTAATTATATAAAAGTTTAATAAGTCAGAAAATATGATAAAATGTAGATGTTCTTTAGACATTAAAA < 1:106130/141‑1 ATTTCCAAATAAATAAAGGGATTTGTGATGTATTTCACAAATTTATCACTATTTTGGAAAATTAAGAAATATTTAATTATATAAAAGTTTAATAAGTCAGAAAATATGATAAAATGTAGATGTTCTTTAGACATTAAAAGC < 2:138636/141‑1 TTTCCAAATAAATAAAGGGATTTGTGATGTATTTCACAAATTTATCACTATTTTGGAAAATTAAGAAATATTTAATTATATAAAAGTTTAATAAGTCAGAAAATATGATAAAATGTAGATGTTCTTTAGACATTAAAAGCT < 1:261272/141‑1 TCCAAATAAATAAAGGGATTTGTGATGTATTTCACAAATTTATCACTATTTTGGAAAATTAAGAAATATTTAATTATATAAAAGTTTAATAAGTCAGAAAATATGATAAAATGTAGATGTTCCTTATACATTAAAAGCTTC > 2:184709/1‑141 TTCACAAATTTATCACTATTTTGGAAAATTAAGAAATATTTAATTATATAAAAGTTTAATAAGTCAGAAAATATGATAAAATGTAGATGTTCTTTAGACATTAAAAGCTTCTAATGTGATACAGGAACCTCATATTCCGTA < 1:480694/141‑1 ATCACTATTTTGGAAAATTAAGAAATATTTAATTATATAAAAGTTTAATAAGTCAGAAAATATGATAAAATGTAGATGTTCTTTAGACATTAAAAGCTTCTAATGTGATACAGGAACCTCATATTCCGTATCATGTTAGAA < 2:318614/141‑1 ACTATTTTGGAAAATTAAGAAATATTTAATTATATAAAAGTTTAATAAGTCAGAAAATATGATAAAATGTAGATGTTCTTTAGACATTAAAAGCTTCTAATGTGATACAGGAACCTCATATTCCGTATCATGTTAGAAGCT < 1:46197/141‑1 AAAAGCTTCTAATGTGATACAGGAACCTCATATTCCGTATCATGTTAGAAGCTTTTAATGTCTAAAGAACATCTACATTTTATCATATTTTCTGACTTATTAAACTTTTATATAATTAAATATTTCTTAATTTTCCAAAAT > 1:162834/1‑141 AAAGCTTCTAATGTGATACAGGAACCTCATATTCCGTATCATGTTAGAAGCTTTTAATGTCTAAAGAACATCTACATTTTATCATATTTTCTGACTTATTAAACTTTTATATAATTAAATATTTCTTAATTTTCCAAAATA > 2:60625/1‑141 CTTCTAATGTGATACAGTAACCTCATATTCCGTATCATGTTAGAAGCTTTTAATGTCTAAAGAACATCTACATTTTATCATATTTTCTGACTTATTAAACTTTTATATAATTAAATATTTCTTAATTTTCCAAAATAGTGA < 1:755956/141‑1 TCTAATGTGATACAGGAACCTCATATTCCGTATCATGTTAGAAGCTTTTAATGTCTAAAGAACATCTACATTTTATCATATTTTCTGACTTATTAAACTTTTATATAATTAAATATTTCTTAATTTTCCAAAATAGTGATA < 1:546777/141‑1 CTAATGTGATACAGGAACCTCATATTCCGTATCATGTTAGAAGCTTTTAATGTCTAAAGAACATCTACATTTTATCATATTTTCTGACTTATTAAACTTTTATATAATTAAATATTTCTTAATTTTCCAAAATAGTGATAA > 1:378016/1‑141 ATGTGATACAGGAACCTCATATTCCGTATCATGTTAGAAGCTTTTAATGTCTAAAGAACATCTACATTTTATCATATTTTCTGACTTATTAAACTTTTATATAATTAAATATTTCTTAATTTTCCAAAATAGTGATAAATT < 1:519236/141‑1 GAATTTCCAAATAAATAAAGGGATTTGTGATGTATTTCACAAATTTATCACTATTTTGGAAAATTAAGAAATATTTAATTATATAAAAGTTTAATAAGTCAGAAAATATGATAAAATGTAGATGTTCTTTAGACATTAAAAGCTTCTAA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2609258‑2609406‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaagcttctaaTGTGATACAGGAACCTCATATTCCGTATCATGTTAGAAGCTTTTAATGTCTAAAGAACATCTACATTTTATCATATTTTCTGACTTATTAAACTTTTATATAATTAAATATTTCTTAATTTTCCAAAATAGTGATAAATT < USA300TCH1516_ALE/2609438‑2609299 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |