| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2679966 | 46 (1.000) | 4 (0.100) | 3/230 | NT | 8.8% | intergenic (+18/+742) | ssaA2_4/USA300HOU_RS13810 | Staphylococcal secretory antigen ssaA2/hypothetical protein |
| ? | USA300TCH1516_ALE | = 2681449 | 42 (1.030) | intergenic (‑484/+95) | USA300HOU_RS13810/mvaA | hypothetical protein/3‑hydroxy‑3‑methylglutaryl‑coenzyme A reductase | |||||
ATGTCGCAGTTGTTGAACAAGTATATAAAAACGGTAGTATTAAAGTTTCAGAATACAACTTTTATCGCCCATTAAAATACAATACACGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2679815‑2679966‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaacttctatcacACGCATACAGGAAATTGAAGCGTTCGTGATAGAAGTTTTTTGATTAGTAAATCAGTCTAATGAAAAGTAAATAACTTCTTCATGAGACGAATTCATTATAGGATTCAAATTTGGAACGAGTTTCTTATTGTCTCGATTTT < USA300TCH1516_ALE/2681449‑2681310 ATGTCGCAGTTGTTGAACAAGTATATAAAAACGGTAGTATTAAAGTTTCAGAATACAACTTTTATCGCCCATTAAAATACAATACACGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAA < 1:377856/141‑1ATGTCGCAGTTGTTGAACAAGTATATAAAAACGGTAGTATTAAAGTTTCAGAATACAACTTTTATCGCCCATTAAAATACAATACACGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAA > 1:586143/1‑141 GCAGTTGTTGAACAAGTATATAAAAACGGTAGTATTAAAGTTTCAGAATACAACTTTTATCGCCCATTAAAATACAATACACGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTC > 1:591735/1‑141 TGTTGAACAAGTATATAAAAACGGTAGTATTAAAGTTTCAGAATACAACTTTTATCGCCCATTAAAATACAATACACGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCA < 2:324546/141‑1 GTTGAACAAGTATATAAAAACGGTAGTATTAAAGTTTCAGAATACAACTTTTATCGCCCATTAAAATACAATACACGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCAC > 1:392688/1‑141 GTATTAAAGTTTCAGAATACAACTTTTATCGCCCATTAAAATACAATACACGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACACGCATACAGGAAATTGAAGCGTTC < 1:386733/141‑1 GTATTAAAGTTTCAGAATACAACTTTTATCGCCCATTAAAATACAATACACGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACACGCATACAGGAAATTGAAGCGTTC < 1:386751/141‑1 AAGTTTCAGAATACAACTTTTATCGCCCATTAAAATACACTACACGTGTCATAACCGAAACGGCAGCACCTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTGATA < 2:31064/141‑1 TTTTATCGCCCATTAAAATACAATACACGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTGATAGAAGTTTTTTGATTAGT < 1:324598/141‑1 AAAAACTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTGATAGAAGTTTTTTGATTAGTAAATCAGTCTAATGAAAAGTAAATAACTTCTTCATGAGACGAATTCATTATAGGATTCAAATTTGGAACGAGTTTCTT > 1:573986/1‑141 AAAAACTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTGATAGAAGTTTTTTGATTAGTAAATCAGTCTAATGAAAAGTAAATAACTTCTTCATGAGACGAATTCATTATAGGATTCAAATTTGGAACGAGTTTCTT < 1:79591/141‑1 AAAAACTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTGATAGAAGTTTTTTGATTAGTAAATCAGTCTAATGAAAAGTAAATAACTTCTTCATGAGACGAATTCATTATAGGATTCAAATTTGGAACGAGTTTCTT > 1:256911/1‑141 AAACTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTGATAGAAGTTTTTTGATTAGTAAATCAGTCTAATGAAAAGTAAATAACTTCTTCATGAGACGAATTCATTATAGGATTCAAATTTGGAACGAGTTTCTTAT < 1:626341/141‑1 AACTTCTAGCACACGCATACAGGAAATTGAAGCGTTCGTGATAGAAGTTTTTTGATTAGTAAATCAGTCTAATGAAAAGTAAATAACTTCTTCATGAGACGAATTCATTATAGGATTCAAATTTGGAACGAGTTTCTTATT < 1:484420/141‑1 CTTCTATCACACGCATACAGGAAATTGAAGCGTTCGTGATAGAAGTTTTTTGATTAGTAAATCAGTCTAATGAAAAGTAAATAACTTCTTCATGAGACGAATTCATTATAGGATTCAAATTTGGAACGAGTTTCTTATTGT < 2:92717/141‑1 TCACACGCATACAGGAAATTGAAGCGTTCGTGATAGAAGTTTTTTGATTAGTAAATCAGTCTAATGAAAAGTAAATAACTTCTTCATGAGACGAATTCATTATAGGATTCAAATTTGGAACGAGTTTCTTATTGTCTCGAT < 1:714221/141‑1 CACGCATACAGGAAATTGAAGCGTTCGTGATAGAAGTTTTTTGATTAGTAAATCAGTCTAATGAAAAGTAAATAACTTCTTCATTAGACGAATTCATTATAGGATTCAAATTTGGAACGAGTTTCTTATTGTCTCGATTTT < 2:123386/141‑1 ATGTCGCAGTTGTTGAACAAGTATATAAAAACGGTAGTATTAAAGTTTCAGAATACAACTTTTATCGCCCATTAAAATACAATACACGTGTACTAAGCAAAAAGGCAGCACGTAACTTTAACTATATTTACTAATCAAAAAACTTCTATCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/2679815‑2679966‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaacttctatcacACGCATACAGGAAATTGAAGCGTTCGTGATAGAAGTTTTTTGATTAGTAAATCAGTCTAATGAAAAGTAAATAACTTCTTCATGAGACGAATTCATTATAGGATTCAAATTTGGAACGAGTTTCTTATTGTCTCGATTTT < USA300TCH1516_ALE/2681449‑2681310 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |