New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 289526	53 (1.150)	3 (0.070)	3/244	NT	5.4%	coding (186/468 nt)	gatA_1	PTS system galactitol‑specific EIIA component
	?	USA300TCH1516_ALE	= 289549	55 (1.270)					coding (209/468 nt)	gatA_1	PTS system galactitol‑specific EIIA component

TCGGCAACTGATAAAGAATCCGTATTGTCACAAATGTCAGATGTGTTATTTCAAAATGGGTTCGTGAAGTCAACGTTTAAAGATGCAGTCATCGACAGAGAAAAAGAATTTGCTACTGGTTTACCAACGCATCTATGTTCGGTCGCTATACCGCATACAGATGTCGAACATATTAACCATAGAACGATAGGTGTGGCTGTTCTAGAAAAAGAAGTGCCGTTTATTGAAATGGGAACACTTGATCAACAGACAGAAGTGAAAATCGTTTTTATGTTAGCAAT  >  USA300TCH1516_ALE/289386‑289666                                                                                                                                             |                                                                                                                                             tCGGCAACTGATAAAGAATCCGTATTGTCACAAATGTCAGATGAGTTATTTCAAAATGGGTTCGTGAAGTCAACGTTTAAAGATGCAGTCATCGACAGAGAAAAAGAATTTGCTACTGGTTTACCAACGCATCTATGTTCG                                                                                                                                              <  1:339238‑M1/141‑1 (MQ=255)  cGGCAACTGATAAAGAATCCGTATTGTCACAAATGTCAGATGTGTTATTTCAAAATGGGTTCGTGAAGTCAACGTTTAAAGATGCAGTCATCGACAGAGAAAAAGAATTTGCTACTGGTTTACCAACGCATCTATGTTCgg                                                                                                                                             >  2:167577/1‑141 (MQ=255)        cTGATAAAGAATCCGTATTGTCACAAATGTCAGATGTGTTATTTCAAAATGGGTTCGTGAAGTCAACGTTTAAAGATGCAGTCATCGACAGAGAAAAAGAATTTGCTACTGGTTTACCAACGCATCTATGTTCGGTCGCta                                                                                                                                       <  1:432719/141‑1 (MQ=255)         tGATAAAGAATCCGTATTGTCACAAATGTCAGATGTGTTATTTCAAAATGGGTTCGTGAAGTCAACGTTTAAAGATGCAGTCATCGACAGAGAAAAAGAATTTGCTACTGGTTTACCAACGCATCTATGTTCGGTCGCtat                                                                                                                                      <  2:105404/141‑1 (MQ=255)            tAAAGAATCCGTATTGTCACAAATGTCAGATGTGTTATTTCAAAATGGGTTCGTGAAGTCAACGTTTAAAGATGCAGTCATCGACAGAGAAAAAGAATTTGCTACTGGTTTACCAACGCATCTATGTTCGGTCGCTATAcc                                                                                                                                   <  1:374179/141‑1 (MQ=255)             aaaGAATCCGTATTGTCACAAATGTCAGATGTGTTATTTCAAAATGGGTTCGTGAAGTCAACGTTTAAAGATGCAGTCATCGACAGAGAAAAAGAATTTGCTACTGGTTTACCAACGCATCTATGTTCGGTCGCTATACCg                                                                                                                                  >  1:22459/1‑141 (MQ=255)              aaGAATCCGTATTGTCACAAATGTCAGATGTGTTATTTCAAAATGGGTTCGTGAAGTCAACGTTTAAAGATGCAGTCATCGACAGAGAAAAAGAATTTGCTACTGGTTTACCAACGCATCTATGTTCGGTCGCTATACCGc                                                                                                                                 >  1:9979/1‑141 (MQ=255)                 aaTCCGTATTGTCACAAATGTCAGATGTGTTATTTCAAAATGGGTTCGTGAAGTCAACGTTTAAAGATGCAGTCATCGACAGAGAAAAAGAATTTGCTACTGGTTTACCAACGCATCTATGTTCGGTCGCTATACCGCATa                                                                                                                              <  1:202232/141‑1 (MQ=255)                 aaTCCGTATTGTCACAAATGTCAGATGTGTTATTTCAAAATGGGTTCGTGAAGTCAACGTTTAAAGATGCAGTCATCGACAGAGAAAAAGAATTTGCTACTGGTTTACCAACGCATCTATGTTCGGTCGCTATACCGCATa                                                                                                                              <  1:202284/141‑1 (MQ=255)                   tCCGTATTGTCACAAATGTCAGATGTGTTATTTCAAAACGGGTTCGTGAAGTCAACGTGTAAAGATGCAGTCAGCGACAGAGAAAAAGAATTTGCTACTGGTTTACCAACGCATCTATGTTCGGTCGCTATACCGCATACa                                                                                                                            <  2:265238/141‑1 (MQ=255)                    ccGTATTGTCACAAATGTCAGATGTGTTATTTCAAAATGGGTTCGTGAAGTCAACGTTTAAAGATGCAGTCATCGACAGAGAAAAAGAATTTGCTACTGGTTTACCAACGCATCTATGTTCGGTCGCTATACCGCATACAg                                                                                                                           <  1:627324/141‑1 (MQ=255)                       tATTGTCACAAATGTCAGATGTGTTATTTCAAAATGGGTTCGTGAAGTCAACGTTTAAAGATGCAGTCATCGACAGAGAAAAAGAATTTGCTACTGGTTTACCAACGCATCTATGTTCGGTCGCTATACCGCATACAGATg                                                                                                                        <  1:201841/141‑1 (MQ=255)                         ttGTCACAAATGTCAGATGTGTTATTTCAAAATGGGTTCGTGAAGTCAACGTTTAAAGATGCAGTCATCGACAGAGAAAAAGAATTTGCTACTGGTTTACCAACGCATCTATGTTCGGTCGCTATACCGCATACAGATGTc                                                                                                                      <  1:108892‑M2/141‑2 (MQ=255)                          tGTCACAAATGTCAGATGTGTTATTTCAAAATGGGTTCGTGAAGTCAACGTTTAAAGATGCAGTCATCGACAGAGAAAAAGAATTTGCTACTGGTTTACCAACGCATCTATGTTCGacatctgtatgcggtatagcgaccg                                                                                                                     <  1:506543‑M1/141‑26 (MQ=255)                            tCACAAATGTCAGATGTGTTATTTCAAAATGGGTTCGTGAAGTCAACGTTTAAAGATGCAGTCATCGACAGAGAAAAAGAATTTGCTACTGGTTTACCAACGCATCTATGTTCGGTCGCTATACCGCATACAGATGTcgaa                                                                                                                   >  1:566537‑M2/1‑137 (MQ=255)                              acaAATGTCAGATGTGTTATTTCAAAATGGGTTCGTGAAGTCAACGTTTAAAGATGCAGTCATCGACAGAGAAAAAGAATTTGCTACTGGTTTACCAACGCATCTATGTTCGacatctgtatgcggtatagcgaccgaaca                                                                                                                 <  2:220593‑M1/141‑30 (MQ=255)                                      cAGATGTGTTATTTCAAAATGGGTTCGTGAAGTCAACGTTTAAAGATGCAGTCATCGACAGAGAAAAAGAATTTGCTACTGGTTTACCAACGCATCTATGTTCGGTCGCTATACCGCATACAGATGTCGAACATATTAAcg                                                                                                         <  1:745556/141‑2 (MQ=255)                                      cAGATGTGTTATTTCAAAATGGGTTCGTGAAGTCAACGTTTAAAGATGCAGTCATCGACAGAGAAAAAGAATTTGCTACTGGTTTACCAACGCATCTATGTTCGGTCGCTATACCGCATACAGATGTCGAACATATTAAcc                                                                                                         <  2:48417/141‑1 (MQ=255)                                         aTGTGTTATTTCAAAATGGGTTCGTGAAGTCAACGTTTAAAGATGCAGTCATCGACAGAGAAAAAGAATTTGCTACTGGTTTACCAACGCATCTATGTTCGGTCGCTATACCGCATACAGATGTCGAACATATTAACCATa                                                                                                      >  1:453162/1‑141 (MQ=255)                                                      aaaTGGGTTCGTGAAGTCAACGTTTAAAGATGCAGTCATCGACAGAGAAAAAGAATTTGCTACTGGTTTACCAACGCATCTATGTTCGGTCGCTATACCGCCTACCGATGTCGAACATATTAACCATAGAACGATAGgtgt                                                                                         <  1:21702/141‑1 (MQ=255)                                                       aaTGGGTTCGTGAAGTCAACGTTTAAAGATGCAGTCATCGACAGAGAAAAAGAATTTGCTACTGGTTTACCAACGCATCTATGTTCGGTCGCTATACCGCATACAGATGTCGAACATATTAACCATAGAACGATAGGtgtg                                                                                        >  1:320114/1‑141 (MQ=255)                                                       aaTGGGTTCGTGAAGTCAACGTTTAAAGATGCAGTCATCGACAGAGAAAAAGAATTTGCTACTGGTTTACCAACGCATCTATGTTCGGTCGCTATACCGCATACAGATGTCGAACATATTAACCATAGAACGATAGGtgtg                                                                                        >  2:183216/1‑141 (MQ=255)                                                       aaTGGGTTCGTGAAGTCAACGTTTAAAGATGCAGTCATCGACAGAGAAAAAGAATTTGCTACTGGTTTACCAACGCATCTATGTTCGGTCGCTATACCGCATACAGATGTCGAACATATTAACCATAGAACGATAGGtgtg                                                                                        <  1:456026/141‑1 (MQ=255)                                                          gggTTCGTGAAGTCAACGTTTAAAGATGCAGTCATCGACAGAGAAAAAGAATTTGCTACTGGTTTACCAACGCATCTATGTTCGGTCGCTATACCGCATACAGATGTCGAACATATTAACCATAGAACGATAGGTGTGGCt                                                                                     <  1:407136/141‑1 (MQ=255)                                                          gggTTCGTGAAGTCAACGTTTAAAGATGCAGTCATCGACAGAGAAAAAGAATTTGCTACTGGTTTACCAACGCATCTATGTTCGGTCGCTATACCGCATACAGATGTCGAACATATTAACCATAGAACGATAGGTGTGGCt                                                                                     >  1:462260/1‑141 (MQ=255)                                                                  gAAGTCAACGTTTAAAGATGCAGTCATCGACAGAGAAAAAGAATTTGCTACTGGTTTACCAACGCATCTATGTTCGacatctgtatgcggtatagcgaccgaacatagatgcgttggtaaaccagtagcaaattctttttc                                                                             <  1:671949‑M1/141‑66 (MQ=255)                                                                       cAACGTTTAAAGATGCAGTCATCGACAGAGAAAAAGAATTTGCTACTGGTTTACCAACGCATCTATGTTCGGTCGCTATACCGCATACAGATGTCGAACATATTAACCATAGAACGATAGGTGTGGCTGTTCTAGAAAaag                                                                        <  1:355733/141‑1 (MQ=255)                                                                       cAACGTTTAAAGATGCAGTCATCGACAGAGAAAAAGAATTTGCTACTGGTTTACCAACGCATCTATGTTCGGTCGCTAGACCGCATACAGATGTCGAACATATTAACCATAGAACGATAGGTGTGGCTGTTCTAGAAAaag                                                                        <  1:515286/141‑1 (MQ=255)                                                                          cGTTTAAAGATGCAGTCATCGACAGAGAAAAAGAATTTGCTACTGGTTTACCAACGCATCTATGTTCGGTCGCTATACCGCATACAGATGTCGAACATATTAACCATAGAACGATAGGTGTGGCTGTTCTAGACAaagaag                                                                     >  1:17038/1‑141 (MQ=255)                                                                          cGTTTAAAGATGCAGTCATCGACAGAGAAAAAGAATTTGCTACTGGTTTACCAACGCATCTATGTTCGGTCGCTATACCGCATACAGATGTCGAACATATTAACCATAGAACGATAGGTGTGGCTGTTCTAGAAAaagaag                                                                     >  2:37189/1‑141 (MQ=255)                                                                               aaaGATGCAGTCATCGACAGAGAAAAAGAATTTGCTACTGGTTTACCAACGCATCTATGTTCGGTCGCTATACCGCATACAGATGTCGAACATATTAACCATAGAACGATAGGTGTGGCTGTTCTAGAAAAAGAAGTGCCg                                                                >  2:51553/1‑141 (MQ=255)                                                                                aaGATGCAGTCATCGACAGAGAAAAAGAATTTGCTACTGGTTTACCAACGCATCTATGTTCGGTCGCTATACCGCATACAGATGTCGAACATATTACCCATAGAACGATAGGTGTGGCCGTTCTAGAAAAAGAAGTGCCGt                                                               >  1:600652/1‑141 (MQ=255)                                                                                aaGATGCAGTCATCGACAGAGAAAAAGAATTTGCTACTGGTTTACCAACGCATCTATGTTCGGTCGCTATACCGCATACAGATGTCGAACATATTAACCATAGAACGATAGGTGTGGCTGTTCTAGAAAAAGAAGTGCCGt                                                               <  1:573373/141‑1 (MQ=255)                                                                                 aGATGCAGTCATCGACAGAGAAAAAGAATTTGCTACTGGTTTACCAACGCATCTATGTTCGGTCGCTATACCGCATACAGATGTCGAACATATTAACCATAGAACGATAGGTGTGGCTGTTCTAGAAAAAGAAGTGCCGtt                                                              >  1:453740/1‑141 (MQ=255)                                                                                 aGATGCAGTCATCGACAGAGAAAAAGAATTTGCTACTGGTTTACCAACGCATCTATGTTCGGTCGCTATACCGCATACAGATGTCGAACATATTAACCATAGAACGATAGGTGTGGCTGTTCTAGAAAAAGAAGTGCCGtt                                                              <  1:232883/141‑1 (MQ=255)                                                                                  aaTGCAGTCATCGACAGAGAAAAAGAATTTGCTACTGGTTTACCAACGCATCTATGTTCGGTCGCTATACCGCATACAGATGTCGAACATATTAACCATAGAACGATAGGTGTGGCTGTTCTAGAAAAAGAAGTGCCGttt                                                             <  2:11998/140‑1 (MQ=255)                                                                                    tGCAGTCATCGACAGAGAAAAAGAATTTGCTACTGGTTTACCAACGCATCTATGTTCGGTCGCTATACCGCATACAGATGTCGAACATATTAACCATAGAACGATAGGTGTGGCTGTTCTAGAAAAAGAAGTGCCGTTTAt                                                           <  1:318498/141‑1 (MQ=255)                                                                                          cATCGACAGAGAAAAAGAATTTGCTACTGGTTTACCAACGCATCTATGTTCGGTCGCTATACCGCATACAGATGTCGAACATATTAACCATAGAACGATAGGTGTGGCTGTTCTAGAAAAAGAAGTGCCGTTTATTGAAAt                                                     <  1:460126/141‑1 (MQ=255)                                                                                              gACAGAGAAAAAGAATTTGCTACTGGTTTACCAACGCGTCTATGTTCGGTCGCTATACCGCATACAGATGTCGAACATATTAACCGTAGAACGATAGGTGTGGCTGTTCTAGAAAAAGAAGTGCCGTTTATTGAAATGGGa                                                 >  1:568317/1‑141 (MQ=255)                                                                                               aCAGAGAAAAAGAATTTGCTACTGGTTTACCAACGCATCTATGTTCGGTCGCTATACCGCATACAGATGTCGAACATATTAACCATAGAACGATAGGTGTGGCTGTTCTAGAAAAAGAAGTGCCGTTTATTGAAATGGGaa                                                <  1:721698/141‑1 (MQ=255)                                                                                                cAGAGAAAAAGAATTTGCTACTGGTTTACCAACGCATCTATGTTCGGTCGCTATACCGCATACAGATGTCGAACATATTAACCATAGAACGATAGGTGTGGCTGTTCTAGAAAAAGAAGTGCCGTTTATTGAAATGGGAac                                               >  1:689303/1‑141 (MQ=255)                                                                                                cAGAGAAAAAGAATTTGCTACTGGTTTACCAACGCATCTATGTTCGGTCGCTATACCGCATACAGATGTCGAACATATTAACCATAGAACGATAGGTGTGGCTGTTCTAGAAAAAGAAGTGCCGTTTATTGAAATGGGAac                                               >  2:268805/1‑141 (MQ=255)                                                                                                    gaAAAAGAATTTGCTACTGGTTTACCAACGCATCTATGTTCGGTCGCTATACCGCATACAGATGTcgaacatagatgcgttggtaaaccagtagcaaattctttttctctgtcgatgactgcatctttaaacgttgacttc                                           <  1:671949‑M2/141‑77 (MQ=255)                                                                                                     aaaaaGAATTTGCTACTGGTTTACCAACGCATCTATGTTCGGTCGCTATACCGCATACAGATGTCGAACATATTAACCATAGAACGATAGGTGTGGCTGTTCTAGAAAAAGAAGTGCCGTTTATTGAAATGGGAACACTTg                                          <  1:63378/141‑1 (MQ=255)                                                                                                       aaaGAATTTGCTACTGGTTTACCAACGCATCTATGTTCGGTCGCTATACCGCATACAGATGTCGAACATATTAACCATAGAACGATAGGTGTGGCTGTTCTAGAAAAAGAAGTGCCGTTTATTGAAATGGGAACACTTGAt                                        >  1:722492/1‑141 (MQ=255)                                                                                                       aaaGAATTTGCTACTGGTTTACCAACGCATCTATGTTCGGTCGCTATACCGCATACAGATGTCGAACATATTAACCATAGAACGATAGGTGTGGCTGTTCTAGAAAAAGAAGTGCCGTTTATTGAAATGGGAACACTTGAt                                        >  1:247593/1‑141 (MQ=255)                                                                                                            aTTTGCTACTGGTTTACCAACGCATCTATGTTCGGTCGCTATACCGCATACAGATGTCGAACATATTAACCATAGAACGATAGGTGTGGCTGTTCTAGAAAAAGAAGTGCCGTTTATTGAAATGGGAACACTTGATCAaca                                   >  1:245526/1‑141 (MQ=255)                                                                                                             tttGCTACTGGTTTACCAACGCATCTATGTTCGGTCGCTATACCGCATACAGATGTCGAACATATTAACCATAGAACGATAGGTGTGGCTGTTCTAGAAAAAGAAGTGCCGTTTATTGAAATGGGAACACTTGATCAacag                                  >  1:675333/1‑141 (MQ=255)                                                                                                             tttGCTACTGGTTTACCAACGCATCTATGTTCGGTCGCTATACCGCATACAGATGTCGAACATATTAACCATAGAACGATAGGTGTGGCTGTTCTAGAAAAAGAAGTGCCGTTTATTGAAATGGGAACACTTGATCAacag                                  >  2:115963/1‑141 (MQ=255)                                                                                                              ttGCTACTGGTTTACCAACGCATCTATGTTCGGTCGCTATACCGCATACAGATGTCGAACATATTAACCATAGAACGATAGGTGTGGCTGTTCTAGAAAAAGAAGTGCCGTTTATTGAAATGGGATCACTTGATCAacaga                                 >  1:242336/1‑141 (MQ=255)                                                                                                               tGCTACTGGTTTACCAACGCATCTATGTTCGGTCGCTATACCGCATACAGATGTCGAACATATTAACCATAGAACGATAGGTGTGGCTGTTCTAGAAAAAGAAGTGCCGTTTATTGAAATGGGAACACTTGATCAacagac                                <  2:245091/141‑1 (MQ=255)                                                                                                                gCTACTGGTTTACCAACGCATCTATGTTCGGTCGCTATACCGCATACAGATGTCGAACATATTAACCATAGAACGATAGGTGTGGCTGTTCTAGAAAAAGAAGTGCCGTTTATTGAAATGGGAACACTTGATCAacagaca                               <  1:215633/141‑1 (MQ=255)                                                                                                                  tACTGGTTTACCAACGCATCTATGTTCGGTCGCTATACCGCATACAGATGTCGAACATATTAACCATAGAACGATAGGTGTGGCTGTTCTAGAAAAAGAAGTGCCGTTTATTGAAATGGGAACACTTGATCAAcagacaga                             <  1:492663/141‑1 (MQ=255)                                                                                                                      ggTTTACCAACGCATCTATGTTCGGTCGCTATACCGCATACAGATGTCGAACATATTAACCATAGAACGATAGGTGTGGCTGTTCTAGAAAAAGAAGTGCCGTTTATTGAAATGGGAACACTTGATCAACAGACAGAAGTg                         >  1:130765/1‑141 (MQ=255)                                                                                                                      ggTTTACCAACGCATCTATGTTCGGTCGCTATACCGCATACAGATGTCGAACATATTAACCATAGAACGATAGGTGTGGCTGTTCTAGAAAAAGAAGTGCCGTTTATTGAAATGGGAACACTTGATCAACAGACAGAAGTg                         <  2:239317/141‑1 (MQ=255)                                                                                                                                cGCATCTATGTTCGGTCGCTATACCGCATACAGATGTCGAACATATTAACCATAGAACGATAGGTGTGGCTGTACTAGAAAAAGCAGTGCCGTTTATTGAAATGGAAACACTTGATCAACAGACAGAAGTGAAAATCGttt               <  1:199863/141‑1 (MQ=255)                                                                                                                                     cTATGTTCGGTCGCTATACCGCATACAGATGTCGAACATATTAACCATAGAACGATAGGTGTGGCTGTTCTAGAAAAAGAAGTGCCGTTTATTGAAATGGGAACACTTGATCAACAGACAGAAGTGAAAATCGTTTTTATg          >  1:133892/1‑141 (MQ=255)                                                                                                                                     cTATGTTCGGTCGCTATACCGCATACAGATGTCGAACATATTAACCATAGAACGATAGGTGTGGCTGTTCTAGAAAAAGAAGTGCCGTTTATTGAAATGGGAACACTTGATCAACAGACAGAAGTGAAAATCGTTTTTATg          >  1:569768/1‑141 (MQ=255)                                                                                                                                     cTATGTTCGGTCGCTATACCGCATACAGATGTCGAACATATTAACCATAGAACGATAGGTGTGGCTGTTCTAGAAAAAGAAGTGCCGTTTATTGAAATGGGAACACTTGATCAACAGACAGAAGTGAAAATCGTTTTTATg          >  1:116368/1‑141 (MQ=255)                                                                                                                                     cTATGTTCGGTCGCTATACCGCATACAGATGTCGAACATATTAACCATAGAACGATAGGTGTGGCTGTTCTAGAAAAAGAAGTGCCGTTTATTGAAATGGGAACACTTGATCAACAGACAGAAGTGAAAATCGTTTTTATg          <  1:596908/141‑1 (MQ=255)                                                                                                                                        tGTTCGGTCGCTATACCGCATACAGATGTcgaacatagatgcgttggtaaaccagtagcaaattctttttctctgtcgatgactgcatctttaaacgttgacttcacgaacccattttgaaataacacatctgacatttgt       <  2:220593‑M2/141‑113 (MQ=255)                                                                                                                                        tGTTCGGTCGCTATACCGCATACAGATGTCGAACATATTAACCATAGAACGATAGGTGTGGCTGTTCTAGAAAAAGAAGTGCCGTTTATTGAAATGGGAACACTTGATCAACAGACAGAAGTGAAAATCGTTTTTATGTTa       >  1:597659/1‑141 (MQ=255)                                                                                                                                         gTTCGGTCGCTATACCGCATACAGATGTCGAACATATTAACCATAGAACGATAGGTGTGGCTGTTCTAGAAAAAGAAGTGCCGTTTATTGAAATGGGAACACTTGATCAACAGACAGAAGTGAAAATCGTTTTTATGTTat      <  1:745920/141‑2 (MQ=255)                                                                                                                                          ttCGacatctgtatgcggtatagcgaccgaacatagatgcgttggtaaaccagtagcaaattctttttctctgtcgatgactgcatctttaaacgttgacttcacgaacccattttgaaataacacatctgacatttgtga     >  1:566537‑M1/1‑4 (MQ=255)                                                                                                                                           tCGGTCGCTATACCGCATACAGATGTCGAACATATTAACCATAGAACGATAGGTGTGGCTGTTCTAGAAAAAGAAGTGCCGTTTATTGAAATGGGAACACTTGATCAACAGACAGAAGTGAAAATCGTTTTTATGTTAGCa    <  1:756623/141‑1 (MQ=255)                                                                                                                                            cGGTCGCTATACCGCATACAGATGTcgaacatagatgcgttggtaaaccagtagcaaattctttttctctgtcgatgactgcatctttaaacgttgacttcacgaacccattttgaaataacacatctgacatttgtgaca   <  1:506543‑M2/141‑117 (MQ=255)                                                                                                                                             ggTCGCTATACCGCATACAGATGTCGAACATATTAACCATAGAACGATAGGTGTGGCTGTTCTAGAAAAAGAAGTGCCGTTTATTGAAATGGGAACACTTGATCAACAGACAGAAGTGAAAATCGTTTTTATGTTAGCAAt  <  2:148600/141‑1 (MQ=255)                                                                                                                                             gacatctgtatgcggtatagcgaccgaacatagatgcgttggtaaaccagtagcaaattctttttctctgtcgatgactgcatctttaaacgttgacttcacgaacccattttgaaataacacatctgacatttgtgacaa  <  1:108892‑M1/141‑141 (MQ=255)                                                                                                                                             |                                                                                                                                             TCGGCAACTGATAAAGAATCCGTATTGTCACAAATGTCAGATGTGTTATTTCAAAATGGGTTCGTGAAGTCAACGTTTAAAGATGCAGTCATCGACAGAGAAAAAGAATTTGCTACTGGTTTACCAACGCATCTATGTTCGGTCGCTATACCGCATACAGATGTCGAACATATTAACCATAGAACGATAGGTGTGGCTGTTCTAGAAAAAGAAGTGCCGTTTATTGAAATGGGAACACTTGATCAACAGACAGAAGTGAAAATCGTTTTTATGTTAGCAAT  >  USA300TCH1516_ALE/289386‑289666

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.