New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 800994	50 (1.080)	5 (0.110)	4/246	NT	10.0%	intergenic (+128/‑223)	hisC_1/USA300HOU_RS03915	Histidinol‑phosphate aminotransferase/Putative 5'(3')‑deoxyribonucleotidase
	?	USA300TCH1516_ALE	= 801032	43 (0.980)					intergenic (+166/‑185)	hisC_1/USA300HOU_RS03915	Histidinol‑phosphate aminotransferase/Putative 5'(3')‑deoxyribonucleotidase

GAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATTGAACATTGATTTATGTCTCAAGCTCAATGCAGTGTGAATGATGAGGTGAGAGTATTCAGTGTAAAA  >  USA300TCH1516_ALE/800861‑801133                                                                                                                                       |                                                                                                                                            gAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTTTTGGGGCCCCGCCGGCC‑AGGTTGACTAGAATTg                                                                                                                                      >  1:205732/1‑141 (MQ=255)  aaTAGTAAGTGGGGAGTGGGACAGAAATGATACTGTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGACTAGAATTGa                                                                                                                                     <  1:728663/141‑1 (MQ=255)   aTAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGACTAGAATTGaa                                                                                                                                    <  1:215514/141‑1 (MQ=255)      gTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGACTAGAATTGaaaaa                                                                                                                                 <  2:67187/141‑1 (MQ=255)       tAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGACTAGAATTGaaaaaa                                                                                                                                >  2:310624/1‑141 (MQ=255)          gTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGACTAGAATTGAAAAAAGCt                                                                                                                             >  2:139110/1‑141 (MQ=255)                  tGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGACTAGAATTGAAAAAAGCTTGTTACaa                                                                                                                     >  1:502964/1‑141 (MQ=39)                    ggACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGACTAGAATTGAAAAAAGCTTGTTACAAgc                                                                                                                   >  2:62905/1‑141 (MQ=39)                    ggACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGACTAGAATTGAAAAAAGCTTGTTACAAgc                                                                                                                   <  2:329764/141‑1 (MQ=38)                     gACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGACTAGAATTGAAAAAAGCTTGTTACAAgcg                                                                                                                  <  1:120071/141‑1 (MQ=38)                     gACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGACTAGAATTGAAAAAAGCTTGTTACAAgcg                                                                                                                  <  1:419866/141‑1 (MQ=39)                      aCAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGACTAGAATTGAAAAAAGCTTGTTACAAgcgc                                                                                                                 <  2:56393/141‑1 (MQ=40)                       cAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGACTgaacgaaaatgcgcttgtaacaagctttt                                                                                                                <  1:62076‑M1/141‑30 (MQ=255)                       cAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCa                                                                                                                <  1:246868/141‑1 (MQ=39)                        aGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCAt                                                                                                               <  1:741071/141‑1 (MQ=255)                          aaaTGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGACTAGAATTTAAAAAAGCTTGTTACAAGCGCAttt                                                                                                             <  1:456953/141‑1 (MQ=255)                           aaTGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCAtttt                                                                                                            <  2:301500/141‑1 (MQ=255)                              gATACTTTCGCAAAATTTATTTCTTTGTCGCGACCCAACTTGCATTGTCTGTAGAAATTGGGAATCTAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGACTgaacgaaaatgcgcttgtaacaagcttttttcaatt                                                                                                         <  1:425506‑M1/141‑37 (MQ=255)                               aTACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGtt                                                                                                        <  2:208151/141‑1 (MQ=40)                                  cTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGACTgaacgaaaatgcgcttgtaacaagcttttttcaattctag                                                                                                     <  2:144749‑M1/141‑41 (MQ=255)                                  cTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCag                                                                                                     >  1:475097‑M2/1‑139 (MQ=255)                                   tttCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGACTgaacgaaaatgcgcttgtaacaagcttttttcaattctagt                                                                                                    <  1:222914‑M1/141‑42 (MQ=255)                                   tttCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCagt                                                                                                    >  1:645811‑M2/1‑138 (MQ=255)                                    ttCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCagtc                                                                                                   >  1:644179‑M2/1‑137 (MQ=255)                                       gtaaaattTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCAGTAGTTGACTgaacgaaaattcgcttgtaacaagcttttttcaattctagtcaa                                                                                                 <  1:49397‑M1/139‑45 (MQ=255)                                       gCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCagtcaac                                                                                                >  1:556673‑M2/1‑134 (MQ=255)                                            atttatttCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTg                                                                                           >  1:349606/1‑141 (MQ=32)                                            atttatttCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTg                                                                                           <  1:643551/141‑1 (MQ=32)                                                 tttCGTCCTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAat                                                                                      <  2:302186/141‑1 (MQ=21)                                                   tcgtcgTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAatat                                                                                    >  1:623051/1‑141 (MQ=35)                                                      tcgtcCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAGTCTGGTTGCTCATTGTTGGGGCCCCGCCGGCA‑AGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAAc                                                                                 >  2:243496/1‑141 (MQ=11)                                                          cccACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTg                                                                             >  1:730074/1‑141 (MQ=35)                                                           ccACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGt                                                                            <  1:43700/141‑1 (MQ=35)                                                                ccAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGc                                                                       <  1:213311/141‑1 (MQ=35)                                                                   aCTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCAtt                                                                    <  2:19560/141‑1 (MQ=37)                                                                   aCTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCAtt                                                                    <  1:149973/141‑1 (MQ=37)                                                                     ttGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATTGa                                                                  >  1:359467/1‑141 (MQ=38)                                                                        cATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGACTAGAATTGAAACAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATTGAACa                                                               <  2:233064/141‑1 (MQ=255)                                                                        cATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATTGAACa                                                               >  1:459774/1‑141 (MQ=38)                                                                          ttGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATTGAACAtt                                                             >  1:504220/1‑141 (MQ=39)                                                                              cTGTAGAAATTGGGAATCCAATTTCTCTGTGTTGGGGCCCCGCCGGCA‑AGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTCGTAGAGCATAGAACATTGAtt                                                         >  2:61998/1‑141 (MQ=255)                                                                                 tAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATTGAACATTGATTTAt                                                      <  2:322820/141‑1 (MQ=39)                                                                                  aGAAATTGGGAATCCAATTTCTCTTTCTTGCGGCGCCGCCGGCA‑AGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTAGTTCAGTCAACTACTGCCAATTTGACTTTGTTGATCATTGAACATTGATTTATg                                                     <  2:160122/141‑1 (MQ=11)                                                                                     aaTTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATTGAACATTGATTTATGtct                                                  <  2:70737/141‑1 (MQ=39)                                                                                      aTTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATTGAACATTGATTTATGtctc                                                 <  1:229489/141‑1 (MQ=39)                                                                                         ggattcccAATTTCTCTTTGTTGGGGCCCCGCCGACA‑AGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGACAATATAAATTTGTAGAGCATTGAACATTGATTTATGTCTCAAg                                              >  1:189446/7‑141 (MQ=14)                                                                                          ggAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATTGAACATTGATTTATGTCTCAAGc                                             >  2:195985/1‑141 (MQ=255)                                                                                          ggAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATTGAACATTGATTTATGTCTCAAGc                                             >  1:451898/1‑141 (MQ=255)                                                                                            aaTCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATTGAACATTGATTTATGTCTCAAGCTc                                           <  2:69202/141‑1 (MQ=255)                                                                                             aTCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATTGAACATTGATTTATGTCTCAAGCTCa                                          >  1:486359/1‑141 (MQ=40)                                                                                             aTCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTGGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATTGAACATTGATTTATGTCTCAAGCTCa                                          >  1:568682/1‑141 (MQ=255)                                                                                                 aaTTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATTGAACATTGATTTATGTCTCAAGCTCAATGc                                      <  1:382703/141‑1 (MQ=255)                                                                                                      ctctTTGTTGGGGCCCCGCCGGCA‑AGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTAAACTACTGCCAATATAACTTTGTAGAGCATTGAACATTGATTTATGTCTCAAGCTCAATGCAgtgt                                 <  1:75464/141‑1 (MQ=255)                                                                                                       tctTTGTTGGGGCCCCGCCGGCA‑AGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATTGAACATTGATTTATGTCTCAAGCTCAATGCAGtgtg                                >  2:305934/1‑141 (MQ=255)                                                                                                           tgttgGGGCCCCGCCGGCA‑AGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATTGAACATTGATTTATGTCTCAAGCTCAATGCAGTGTGAatg                            <  1:458526/141‑1 (MQ=255)                                                                                                                  gCCCCGCCGGCA‑AGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATTGAACATTGATTTATGTCTCAAGCTCAATGCAGTGTGAATGATGAggg                     >  1:739434/1‑140 (MQ=255)                                                                                                                     ccgccgGCA‑AGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATTGAACATTGATTTATGTCTCAAGCTCAATGCAGAGTGAATGATAAGGTgag                  >  1:775485/1‑141 (MQ=255)                                                                                                                      cgccgGCA‑AGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATTGAACATTGATTTATGTCTCAAGCTCAATGCAGTGTGAATGATGAGGTgaga                 <  1:81814/141‑1 (MQ=255)                                                                                                                                ggTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATTGAACATTGATTTATGTCTCAAGCTCAATGCAGTGTGAATGATGAGGTGAGAGTATTCAgt        >  1:448151/1‑141 (MQ=255)                                                                                                                                 gTTGACTgaacgaaaatgcgcttgtaacaagcttttttcaattctagtcaaccttgccggcggggccccaacaaagagaaattggattcccaatttctacagacaatgcaagttggggtgggacgacgaaataaattttgc       >  1:556673‑M1/1‑7 (MQ=255)                                                                                                                                  ttGACTAGAATTGAAAAAAGCTTGTTACAAGCGAATTTTCGTTCagtcaactactgccggcggggccccaacaaagagaaattggattcccaatttctacagacaatgcaagttggggtgggacgacgaaataaattttac      <  1:49397‑M2/141‑98 (MQ=255)                                                                                                                                    gACTgaacgaaaatgcgcttgtaacaagcttttttcaattctagtcaaccttgccggcggggccccaacaaagagaaattggattcccaatttctacagacaatgcaagttggggtgggacgacgaaataaattttgcgaa    >  1:644179‑M1/1‑4 (MQ=255)                                                                                                                                     aCTgaacgaaaatgcgcttgtaacaagcttttttcaattctagtcaaccttgccggcggggccccaacaaagagaaattggattcccaatttctacagacaatgcaagttggggtgggacgacgaaataaattttgcgaaa   >  1:645811‑M1/1‑3 (MQ=255)                                                                                                                                     aCTAGAATTGAAAACAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATTGAACATTGATTTATGTCTCAAGCTCAATGCAGTGTGAATGATGAGGTGAGATTATTCAGTGTaaa   <  1:342224/141‑1 (MQ=255)                                                                                                                                     aCTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCagtcaaccttgccggcggggccccaacaaagagaaattggattcccaatttctacagacaatgcaagttggggtgggacgacgaaataaattttgcgaaa   <  1:222914‑M2/141‑101 (MQ=255)                                                                                                                                      cTgaacgaaaatgcgcttgtaacaagcttttttcaattctagtcaaccttgccggcggggccccaacaaagagaaattggattcccaatttctacagacaatgcaagttggggtgggacgacgaaataaattttgcgaaag  >  1:475097‑M1/1‑2 (MQ=255)                                                                                                                                      cTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCagtcaaccttgccggcggggccccaacaaagagaaattggattcccaatttctacagacaatgcaagttggggtgggacgacgaaataaattttgcgaaag  <  2:144749‑M2/141‑102 (MQ=255)                                                                                                                                       |                                                                                                                                            GAATAGTAAGTGGGGAGTGGGACAGAAATGATACTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCCGCCGGCA‑AGGTTGACTAGAATTGAAAAAAGCTTGTTACAAGCGCATTTTCGTTCAGTCAACTACTGCCAATATAACTTTGTAGAGCATTGAACATTGATTTATGTCTCAAGCTCAATGCAGTGTGAATGATGAGGTGAGAGTATTCAGTGTAAAA  >  USA300TCH1516_ALE/800861‑801133

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.