New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	2207748 =	59 (1.280)	3 (0.070)	3/238	NT	5.6%	intergenic (+109/+155)	rodA/USA300HOU_RS11255	Peptidoglycan glycosyltransferase RodA/hypothetical protein
	?	USA300TCH1516_ALE	2207798 =	47 (1.110)					intergenic (+159/+105)	rodA/USA300HOU_RS11255	Peptidoglycan glycosyltransferase RodA/hypothetical protein

ATGTCGATTTATACCATCCAAAAAGTAATTAATTTAAACTATTTTGAGTTTCAAATATCATAACTTTTCAAGATGACGTTATATAGTCTATTTACGTCGTCGATTTAAAATGTCATATATAGATATTACTCGATAATAACAATCCCTCTTTGAAGTACACATTGTAAAATGTACACTCTAAAGAGGGATTTTGTTATATAGTACTTGCTTTCATTTTAGTAAATCCAGTCAAAAAAGCTATCATCGAATAGTCCGACGATAGCTTTAACGGTGTGTGATTC  >  USA300TCH1516_ALE/2207608‑2207888                                                                                                                                             |                                                                                                                                             cagcatctaataaagtaagtcacgaattaaaataattgactgtgattgtgaatcacacaccgttaaagctatcgtcggactattcgatgatagcttttttgactggatttactaaaatgaaagcaagtactatataacaaa                                                                                                                                              <  1:183663‑M1/1‑1 (MQ=255)  agcatctaataaagtaagtcacgaattaaaataattgactgtgattgtgaatcacacaccgttaaagctatcgtcggactattcgatgatagcttttttgactggatttactaaaatgaaagcaagtactatataacaaaa                                                                                                                                             >  1:712698‑M1/140‑141 (MQ=255)   gTCGATTTATACCATCCAAAAAGTAATTAATTTAAACTATTTTGAGTTTCAAATATCATAACTTTTCAAGATGACGTTATATAGTCTATTTACGTCGTCGATTTAAAATGTCATATATAGATATTACTCGATAATAACAAt                                                                                                                                            >  1:512281/1‑141 (MQ=255)   gTCGATTTATACCATCCAAAAAGTAATTAATTTAAACTATTTTGAGTTTCAAATATCATAACTTTTCAAGATGACGTTATATAGTCTATTTACGTCGTCGATTTAAAATGTCATATATAGATATTACTCGATAATAACAAt                                                                                                                                            >  1:137140/1‑141 (MQ=255)    tCGATTTATACCATCCAAAAAGTAATTAATTTAAACTATTTTGAGTTTCAAATATCATAACTTTTCAAGATGACGTTATATAGTCTATTTACGTCGTCGATTTAAAATGTCATATATAGATATTACTCGATAATAACAATc                                                                                                                                           <  1:706306/141‑1 (MQ=255)     cGATTTATACCATCCAAAAAGTAATTAATTTAAACTATTTTGAGTTTCAAATATCATAACTTTTCAAGATGACGTTATATAGTCTATTTACGTCGTCGATTTAAAATGTCATATATAGATATTACTCGATAATAACAATcc                                                                                                                                          <  2:141031/141‑1 (MQ=255)     cGATTTATACCATCCAAAAAGTAATTAATTTAAACTATTTTGAGTTTCAAATATCATAACTTTTCAAGATGACGTTATATAGTCTATTTACGTCGTCGATTTAAAATGTCATATATAGATATTACTCGATAATAACAATcc                                                                                                                                          <  1:33136/141‑1 (MQ=255)      gATTTATACCATCCAAAAAGTAATTAATTTAAACTATTTTGAGTTTCAAATATCATAACTTTTCAAGATGACGTTATATAGTCTATTTACGTCGTCGATTTAAAATGTCATATATAGATATTACTCGATAATAACAATccc                                                                                                                                         >  1:88296/1‑141 (MQ=255)      gATTTATACCATCCAAAAAGTAATTAATTTAAACTATTTTGAGTTTCAAATATCATAACTTTTCAAGATGACGTTATATAGTCTATTTACGTCGTCGATTTAAAATGTCATATATAGATATTACTCGATAATAACAATccc                                                                                                                                         <  1:199660/141‑1 (MQ=255)         aataaagtaagtcacgaattaaaataattgactgtgattgtgaatcacacaccgttaaagctatcgtcggactattcgatgatagcttttttgactggattaactaaaatgaaagcaagtactatataacaaAATCCctct                                                                                                                                      <  1:605959‑M1/9‑1 (MQ=255)          tataCCATCCAAAAAGTAATTAATTTAAACTATTTTGAGTTTCAAATATCATAACTTTTCAAGATGACGTTATATAGTCTATTTACGTCGTCGATTTAAAATGTCATATATAGATATTACTCGATAATAACAATCCCTCtt                                                                                                                                     <  1:368422/141‑1 (MQ=255)            taCCATCCAAAAAGTAATTAATTTAAACTATTTTGAGTTTCAAATATCATAACTTTTCAAGATGACGTTATATAGTCTATTTACGTCGTCGATTTAAAATGTCATATATAGATATTACTCGAAAATAACAATCCCTCTTTg                                                                                                                                   >  2:147560/1‑141 (MQ=255)             aCCATCCAAAAAGTAATTAATTTAAACTATTTTGAGTTTCAAATATCATAACTTTTCAAGATGACGTTATATAGTCTATTTACGTCGTCGATTTAAAATGTCATATATAGATATTACTCGATAATAACAATCCCTCTTTGa                                                                                                                                  <  1:643040/141‑1 (MQ=255)                aTCCAAAAAGTAATTAATTTAAACTATTTTGAGTTTCAAATATCATAACTTTTCAAGATGACGTTATATAGTCTATTTACGTCGTCGATTTAAAATGTCATATATAGATATTACTCGATAATAACAATCCCTCTTTGAAGt                                                                                                                               <  1:121116/141‑1 (MQ=255)                       aaGTAATTAATTTAAACTATTTTGAGTTTCAAATATCATAACTTTTCAAGATGACGTTATATAGTCTATTTACGTCGTCGATTTAAAATGTCATATATAGATATTACTCGATAATAACAATCCCTCTTTGAAGTACACAtt                                                                                                                        >  1:63649/1‑141 (MQ=255)                       aaGTAATTAATTTAAACTATTTTGAGTTTCAAATATCATAACTTTTCAAGATGACGTTATATAGTCTATTTACGTCGTCGATTTAAAATGTCATATATAGATATTACTCGATAATAACAATCCCTCTTTGAAGTACACAtt                                                                                                                        >  1:692010/1‑141 (MQ=255)                        aGTAATTAATTTAAACTATTTTGAGTTTCAAATATCATAACTTTTCAAGATGACGTTATATAGTCTATTTACGTCGTCGATTTAAAATGTCATATATAGATATTACTCGATAATAACAATACCTCTTTGAAGTACACATTg                                                                                                                       >  1:552735/1‑141 (MQ=255)                         gTAATTAATTTAAACTATTTTGAGTTTCAAATATCATAACTTTTCAAGATGACGTTATATAGTCTATTTACGTCGTCGATTTAAAATGTCATATATAGATATTACTCGATAATAACAATCCCTCTTTGAAGTACACATTGt                                                                                                                      >  1:368109/1‑141 (MQ=255)                                attTAAACTATTTTGAGTTTCAAATATCATAACTTTTCAAGATGACGTTATATAGTCTATTTACGTCGTCGATTTAAAATGTCATATATAGATATTACTCGATAATAACAATCCCTCTTTGAAGTACACATTGTAAAATGt                                                                                                               >  1:629770/1‑141 (MQ=255)                                   tAAACTATTTTGAGTTTCAAATATCATAACTTTTCAAGATGACGTTATATAGTCTATTTACGTCGTCGATTTAAAATGTCATATATAGATATTACTCGATAATAACAATCCCTCTTTGAAGTACACATTGTAAAATGTaca                                                                                                            <  1:731360/141‑1 (MQ=255)                                    aaaCTATTTTGAGTTTCAAATATCATAACTTTTCAAGATGACGTTATATAGTCTATTTACGTCGTCGATTTAAAATGTCATATATAGATATTACTCGATAATAACAATCCCTCTTTGAAGTACACATTGTAAAATGTacac                                                                                                           <  1:267895/141‑1 (MQ=255)                                      aCTATTTTGAGTTTCAAATATCATAACTTTTCAAGATGACGTTATATAGTCTATTTACGTCGTCGATTTAAAATGTCATATATAGATATTACTCGATAATAACAATCCCTCTTTGAAGTACACATTGTAAAATGTACActc                                                                                                         >  1:112339/1‑141 (MQ=255)                                            gattgtgaatcacacaccgttaaagctatcgtcggactattcgatgatagcttttttgactggatttactaaaatgaaagcaagtactatataacaaAATCCCTCTTTGAAGTACACATTGTAAAATGTACACTCTAAaga                                                                                                   >  1:72093‑M1/98‑141 (MQ=255)                                             attgtgaatcacacaccgttaaagctatcgtcggactattcgatgatagcttttttgactggatttactaaaatgaaagcaagtactatataacaaAATCCCTCTTTGAAGTACACATTGTAAAATGTACACTCTAAagag                                                                                                  >  1:125560‑M1/97‑141 (MQ=255)                                              gAGTTTCAAATATCATAACTTTTCAAGATGACGTTATATAGTCTATTTACGTCGTCGATTTAAAATGTCATATATAGATATTACTCGATAATAACAATCCCTCTTTGAAGTACACATTGTAAAATGTACACTCTAAAGAgg                                                                                                 >  1:167608/1‑141 (MQ=255)                                              gAGTTTCAAATATCATAACTTTTCAAGATGACGTTATATAGTCTATTTACGTCGTCGATTTAAAATGTCATATATAGATATTACTCGATAATAACAATCCCTCTTTGAAGTACACATTGTAAAATGTACACTCTAAAGAgg                                                                                                 >  1:464763/1‑141 (MQ=255)                                                 tttCAAATATCATAACTTTTCAAGATGACGTTATATAGTCTATTTACGTCGTCGATTTAAAATGTCATATATAGATATTACTCGATAATAACAATCCCTCTTTGAAGTACACATTGTAAAATGTACACTCTAAAGAGGGAt                                                                                              <  2:122582/141‑1 (MQ=255)                                                  ttCAAATATCATAACTTTTCAAGATGACGTTATATAGTCTATTTACGTCGTCGATTTAAAATGTCATATATAGATATTACTCGATAATAACAATCCCTCTTTGAAGTACACATTGTAAAATGTACACTCTAAAGAGGGAtt                                                                                             <  1:90710/141‑1 (MQ=255)                                                   tCAAATATCATAACTTTTCAAGATGACGTTATATAGTCTATTTACGTCGTCGATTTAAAATGTCATATATAGATATTACTCGATAATAACAATCCCTCTTTGAAGTACACATTGTAAAATGTACACTCTAAAGAGGGAttt                                                                                            >  1:716124/1‑141 (MQ=255)                                                    cAAATATCATAACTTTTCAAGATGACGTTATATAGTCTATTTACGTCGTCGATTTAAAATGTCATATATAGATATTACTCGATAATAACAATCCCTCTTTGAAGTACACATTGTAAAATGTACACTCTAAAGAGGGAtttt                                                                                           <  2:262437/141‑1 (MQ=255)                                                     tcacacaccgttaaagctatcgtcggactattcgatgatagcttttttgactggatttactaaaatgaaagcaagtactatataacaa‑‑TCCCTCTTTGAAGTACACATTGTAAAATGTACACTCTAAAGAGGGATTTTGtt                                                                                        >  2:268478‑M1/89‑141 (MQ=255)                                                      aaTATCATAACTTTTCAAGATGACGTTATATAGTCTATTTACGTCGTCGATTTAAAATGTCATATATAGATATTACTCGATAATAACAATCCCTCTTTGAAGTACACATTGTAAAATGTACACTCTAAAGAGGGATTTTGt                                                                                         <  2:291824/141‑1 (MQ=255)                                                          tCATAACTTTTCAAGATGACGTTATATAGTCTATTTACGTCGTCGATTTAAAATGTCATATATAGATATTACTCGATAATAACAATCCCTCTTTGAAGTACACATTGTAAAATGTACACTCTAAAGAGGGATTTTGTtata                                                                                     >  1:395501/1‑141 (MQ=255)                                                           cATAACTTTTCAAGATGACGTTATATAGTCTATTTACGTCGTCGATTTAAAATGTCATATAGAGATATTACTCGATAATAACAATCCCTCTTTGAAGTACACATTGTAAAATGTACACTCTAAAGAGGGATTTTGTtatat                                                                                    <  1:50641/141‑1 (MQ=255)                                                               aCTTTTCAAGATGACGTTATATAGTCTATTTACGTCGTCGATTTAAAATGTCATATATAGATATTACTCGATAATAACAATCCCTCTTTGAAGTACACATTGTAAAATGTACACTCTAAAGAGGGATTTTGTTATATAGTa                                                                                <  2:163661/141‑1 (MQ=255)                                                                 ttttCAAGATGACGTTATATAGTCTATTTACGTCGTCGATTTAAAATGTCATATATAGATATTACTCGATAATAACAATCCCTCTTTGAAGTACACATTGTAAAATGTACACTCTAAAGAGGGATTTTGTTATATAGTACt                                                                              <  1:521265/141‑1 (MQ=255)                                                                 ttttCAAGATGACGTTATATAGTCTATTTACGTCGTCGATTTAAAATGTCATATATAGATATTACTCGATAATAACAATCCCTCTTTGAAGTACACATTGTAAAATGTACACTCTAAAGAGGGATTTTGTTATATAGTACt                                                                              <  1:457423/141‑1 (MQ=255)                                                                 ttttCAAGATGACGTTATATAGTCTAGTTACGTCGTCGATTTAAAATGTCATATATAGATATTACTCGATAATAACAATCCCTCTTTGAAGTACACATTGTAAAATGTACACTCTAAAGAGGGATTTTGTTATATAGTACt                                                                              <  2:201987/141‑1 (MQ=255)                                                                   ttCAAGATGACGTTATATAGTCTATTTACGTCGTCGATTTAAAATGTCATATATAGATATTACTCGATAATAACAATCCCTCTTTGAAGTACACATTGTAAAATGTACACTCTAAAGAGGGATTTTGTTATATAGTACTTg                                                                            <  1:100946/141‑1 (MQ=255)                                                                     cAAGATGACGTTATATNGTCTATTTACGTCGTCGATTTAAAATGTCATATATAGATATTACTCGATAATAACAATCCCTCTTTGAAGTACACATTGTAAAATGTACACTCTAAAGAGGGATTTTGTTATATAGTACTTGCt                                                                          >  1:635430/1‑141 (MQ=255)                                                                     cAAGATGACGTTATATAGTCTATTTACGTCGTCGATTTAAAATGTCATATATAGATATTACTCGATAATAACAATCCCTCTTTGAAGTACACATTGTAAAATGTACACTCTAAAGAGGGATTTTGTTATATAGTACTTGCt                                                                          >  1:349764/1‑141 (MQ=255)                                                                     cAAGATGACGTTATATAGTCTATTTACGTCGTCGATTTAAAATGTCATATATAGATATTACTCGATAATAACAATCCCTCTTTGAAGTACACATTGTAAAATGTACACTCTAAAGAGGGATTTTGTTATATAGTACTTGCt                                                                          <  2:173482/141‑1 (MQ=255)                                                                     cAAGATGACGTTATATAGTCTATTTACGTCGTCGATTTAAAATGTCATATATAGATATTACTCGATAATAACAATCCCTCTTTGAAGTACACATTGTAAAATGTACACTCTAAAGAGGGATTTTGTTATATAGTACTTGCt                                                                          >  2:46145/1‑141 (MQ=255)                                                                          tGACGTTATATAGTCTATTTACGTCGTCGATTTAAAATGTCATATATAGATATTACTCGATAATAACAATCCCTCTTTGAAGTACACATTGTAAAATGTACACTCTAAAGAGGGATTTTGTTATATAGTACTTGCTTTCAt                                                                     >  2:266222/1‑141 (MQ=255)                                                                             cGTTATATAGTCTATTTACGTCGTCGATTTAAAATGTCATATATAGATATTACTCGATAATAACAATCCCTCTTTGAAGTACACATTGTAAAATGTACACTCTAAAGAGGGATTTTGTTATATAGTACTTGCTTTCAtttt                                                                  <  1:37919/141‑1 (MQ=255)                                                                               ttATATAGTCTATTTACGTCGTCGATTTAAAATGTCATATATAGATATTACTCGATAATAACAATCCCTCTTTGAAGTACACATTGTAAAATGTACACTCTAAAGAGGGATTTTGTTATATAGTACTTGCTTTCATTTTAg                                                                >  2:87603/1‑141 (MQ=255)                                                                                   ataGTCTATTTACGTCGTCGATTTAAAATGTCATATATAGATATTACTCGATAATAACAATCCCTCTTTGAAGTACACATTGTAAAATGTACACTCTAAAGAGGGATTTTGTTATATAGTACTTGCTTTCATTTTAGTaaa                                                            <  1:687769/141‑1 (MQ=255)                                                                                        cTATTTACGTCGTCGATTTAAAATGTCATATATAGATATTACTCGATAATAACAATCCCTCTTTGAAGTACACATTGTAAAATGTACACTCTAAAGAGGGATTTTGTTATATAGTACTTGCTTTCATTTTAGTAAATCCAg                                                       >  1:61010/1‑141 (MQ=255)                                                                                        cTATTTACGTCGTCGATTTAAAATGTCATATATAGATATTACTCGATAATAACAATCCCTCTTTGAAGTACACATTGTAAAATGTACACTCTAAAGAGGGATTTTGTTATATAGTACTTGCTTTCATTTTAGTAAATCCAg                                                       <  1:349012/141‑1 (MQ=255)                                                                                        cTATTTACGTCGTCGATTTAAAATGTCATATATAGATATTACTCGATAATAACAATCCCTCTTTGAAGTACACATTGTAAAATGTACACTCTAAAGAGGGATTTTGTTATATAGTACTTGCTTTCATTTTAGTAAATCCAg                                                       <  1:87921/141‑1 (MQ=255)                                                                                          aTTTACGTCGTCGATTTAAAATGTCATATATAGATATTACTCGATAATAACAATCCCTCTTTGAAGTACACATTGTAAAATGTACACTCTAAAGAGGGATTTTGTTATATAGTACTTGCTTTCATTTTAGTAAATCCAGTc                                                     >  1:716423/1‑141 (MQ=255)                                                                                                gtcgtcGATTTAAAATGTCATATATAGATATTACTCGATAATAACAATCCCTCTTTGAAGTACACATTGTAAAATGTACACTCTAAAGAGGGATTTTGTTATATAGTACTTGCTTTCATTTTAGTAAATCCAGTCaaaaaa                                               >  1:419320/1‑141 (MQ=255)                                                                                                  cgtcgATTTAAAATGTCATATATAGATATTACTCGATAATAACAATCCCTCTTTGAAGTACACATTGTAAAATGTACACTCTAAAGAGGGATTTTGTTATATAGTACTTGCTTTCATTTTAGTAAGACCAGTCAAAAAAGc                                             >  1:242157/1‑141 (MQ=255)                                                                                                    tcgATTTAAAATGTCATATATAGATATTACTCGATAATAACAATCCCTCTTTGAAGTACACATTGTAAAATGTACACTCTAAAGAGGGATTTTGTTATATAGTACTTGCTTTCATTTTAGTAAATCCAGTCAAAAAAGCTa                                           >  1:46384/1‑141 (MQ=255)                                                                                                      gATTTAAAATGTCATATATAGATATTACTCGATAATAACAATCCCTCTTTGAAGTACACATTGTAAAATGTACACTCTAAAGAGGGATTTTGTTATATAGTACTTGCTTTCATTTTAGTAAATCCAGTCAAAAAAGCTatc                                         >  2:3859/1‑141 (MQ=255)                                                                                                        tttAAAATGTCATATATAGATATTACTCGATAATAACAATCCCTCTTTGAAGTACACATTGTAAAATGTACACTCTAAAGAGGGATTTTGTTATATAGTACTTGCTTTCATTTTAGTAAATCCAGTCAAAAAAGCTatcat                                       <  2:10026/141‑1 (MQ=255)                                                                                                              aTGTCATATATAGATATTACTCGATAATAACAATCCCTCTTTGAAGTACACATTGTAAAATGTACACTCTAAAGAGGGATTTTGTTATATAGTACTTGCTTTCATTTTAGTAAATCCAGTCAAAAAAGCTATCATCGAATa                                 >  2:251590/1‑141 (MQ=255)                                                                                                               tGTCATATATAGATATTACTCGATAATAACAATCCCTCTTTGAAGTACACATTGTAAAATGTACACTCTAAAGAGGGATTTTGTTATATAGTACTTGCTTTCATTTTAGTAAATCCAGTCAAAAAAGCTATCATCGAATAg                                <  2:15353/141‑1 (MQ=255)                                                                                                                 tCATATATAGATATTACTCGATAATAACAATCCCTCTTTGAAGTACACATTGTAAAATGTACACTCTAAAGAGGGATTTTGTTATATAGTACTTGCTTTCATTTTAGTAAATCCAGTCAAAAAAGCTATCATCGAATAGTc                              >  1:165545/1‑141 (MQ=255)                                                                                                                 tCATATATAGATATTACTCGATAATAACAATCCCTCTTTGAAGTACACATTGTAAAATGTACACTCTAAAGAGGGATTTTGTTATATAGTACTTGCTTTCATTTTAGTAAATCCAGTCAAAAAAGCTATCATCGAATAGTc                              <  1:649322/141‑1 (MQ=255)                                                                                                                   atatatAGATATTACTCGATAATAACAATCCCTCTTTGAAGTACACATTGTAAAATGTACACTCTAAAGAGGGATTTTGTTATATAGTACTTGCTTTCATTTTAGTAAATCCAGTCAAAAAAGCTATCATCGAATAGTCcg                            <  1:239154/141‑1 (MQ=255)                                                                                                                     atataGATATTACTCGATAATAACAATCCCTCTTTGAAGTACACATTGTAAAATGTACACTCTAAAGAGGGATTTTGTTATATAGTACTTGCTTTCATTTTAGTAAATCCAGTCAAAAAAGCTATCATCGAATAGTCcgac                          >  1:637012/1‑141 (MQ=255)                                                                                                                      tataGATATTACTCGATAATAACAATCCCTCTTTGAAGTACACATTGTAAAATGTACACTCTAAAGAGGGATTTTGTTATATAGTACTTGCTTTCATTTTAGTAAATCCAGTCAAAAAAGCTATCATCGAATAGTCcgacg                         >  1:514326/1‑141 (MQ=255)                                                                                                                       ataGATATTACTCGATAATAACAATCCCTCTTTGAAGTACACATTGTAAAATGTACACTCTAAAGAGGGATTTTGTTATATAGTACTTGCTTTCATTTTAGTAAATCCAGTCAAAAAAGCTATCATCGAATAGTCcgacga                        <  1:192535/141‑1 (MQ=255)                                                                                                                             atTACTCGATAATAACAATCCCTCTTTGAAGTACACATTGTAAAATGTACACTCTAAAGAGGGATTTTGTTATATAGTACTTGCTTTCATTTTAGTAAATCCAGTCAAAAAAGCTATCATCGAATAGTCCGACGATAGCtt                  <  2:14619/141‑1 (MQ=255)                                                                                                                             atTACTCGATAATAACAATCCCTCTTTGAAGTACACATTGTAAAATGTACACTCTAAAGAGGGATTTTGTTATATAGTACTTGCTTTCATTTTAGTAAATCCAGTCAAAAAAGCTATCATCGAATAGTCCGACGATAGCtt                  <  1:138922/141‑1 (MQ=255)                                                                                                                                   cGATAATAACAATCCCTCTTTGAAGTACACATTGTAAAATGTACACTCTAAAGAGGGATTTTGTTATATAGTACTTGCTTTCATTTTAGTAAATCCAGTCAAAAAAGCTATCATCGAATAGTCCGACGATAGCTTTAACgg            >  1:391370/1‑141 (MQ=255)                                                                                                                                     ataataACAATCCCTCTTTGAAGTACACATTGTAAAATGTACACTCTAAAGAGGGATTTTGTTATATAGTACTTGCTTTCATTTTAGTAAATCCAGTCAAAAAAGCTATCATCGAATAGTCCGACGATAGCTTTAACGgtg          >  2:39161/1‑141 (MQ=255)                                                                                                                                      taataaCAATCCCTCTTTGAAGTACACATTGTAAAATGTACACTCTAAAGAGGGATTTTGTTATATAGTACTTGCTTTCATTTTAGTAAATCCAGTCAAAAAAGCTATCATCGAATAGTCCGACGATAGCTTTAACGgtgt         <  1:726175/141‑1 (MQ=255)                                                                                                                                      taataaCAATCCCTCTTTGAAGTACACATTGTAAAATGTACACTCTAAAGAGGGATTTTGTTATATAGTACTTGCTTTCATTTTAGTAAATCCAGTCAAAAAAGCTATCATCGAATAGTCCGACGATAGCTTTAACGgtgt         >  1:286789/1‑141 (MQ=255)                                                                                                                                           aCAATCCCTCTTTGAAGTACACATTGTAAAATGTACACTCTAAAGAGGGATTTTGTTATATAGTACTTGCTTTCATTTTAGTAAATCCAGTCAAAAAAGCTATCATCGAATAGTCCGACGATAGCTTTAACGGTGTGTGAt    >  2:186732/1‑141 (MQ=255)                                                                                                                                           aCAATCCCTCTTTGAAGTACACATTGTAAAATGTACACTCTAAAGAGGGATTTTGTTATATAGTACTTGCTTTCATTTTAGTAAATCCAGTCAAAAAAGCTATCATCGAATAGTCCGACGATAGCTTTAACGGTGTGTGAt    >  2:165547/1‑141 (MQ=255)                                                                                                                                           aCAATCCCTCTTTGAAGTACACATTGTAAAATGTACACTCTAAAGAGGGATTTTGTTATATAGTACTTGCTTTCATTTTAGTAAATCCAGTCAAAAAAGCTATCATCGAATAGTCCGACGATAGCTTTAACGGTGTGTGAt    >  1:477880/1‑141 (MQ=255)                                                                                                                                             AATCCCTCTTTGAAGTACACATTGTAAAATGTACACTCTAAAGAGGGATTTTGTTATATAGTACTTGCTTTCATTTTAGTAAATCCAGTCAAAAAAGCTATCATCGAATAGTCCGACGATAGCTTTAACGGTGTGTGATTc  <  1:670527‑M1/141‑1 (MQ=255)                                                                                                                                             |                                                                                                                                             ATGTCGATTTATACCATCCAAAAAGTAATTAATTTAAACTATTTTGAGTTTCAAATATCATAACTTTTCAAGATGACGTTATATAGTCTATTTACGTCGTCGATTTAAAATGTCATATATAGATATTACTCGATAATAACAATCCCTCTTTGAAGTACACATTGTAAAATGTACACTCTAAAGAGGGATTTTGTTATATAGTACTTGCTTTCATTTTAGTAAATCCAGTCAAAAAAGCTATCATCGAATAGTCCGACGATAGCTTTAACGGTGTGTGATTC  >  USA300TCH1516_ALE/2207608‑2207888

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.