New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP000731 1596 =366 (0.940)6 (0.020) 4/270 34.6 1.7% intergenic (+381/‑475) repA/USA300HOU_pUSA300HOUMR0003 replication protein A/hypothetical protein
?CP000731 1624 = 366 (1.020)intergenic (+409/‑447) repA/USA300HOU_pUSA300HOUMR0003 replication protein A/hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

Only 100 of 390 total aligned reads displayed.

CGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGATAACTGATGTCTTTTTTTATTGTT‑TTTCTGTAAAAAAGTGCTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAGTGTGACACTACAGCTTTGTATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGAATGATAGCAAATTTCCCTTATGCTCTTACGGAGATTTTAGAGTTAAATTAAAATTTCTAAGTTTTTGATAAGAA  >  CP000731/1479‑1771
                                                                                                                                                  |                                                                                                                                                   
cGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGATAACTGATGTCTTTTTTTATTGTT‑TTTCTGTAAAAAAGTGCTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAGTGTGACACTACAGCt                                                                                                                                                   >  1:731924/1‑148 (MQ=255)
 gaaaTTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGATAACTGATGTCTTTTTTTATTGTT‑TTTCTGTAAAAAAGTGCTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAGTGTGACACTACAGCtt                                                                                                                                                  <  1:966506/146‑1 (MQ=255)
 gCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGATAACTGATGTCTTTTTTTATTGTT‑TTTCTGTAAAAAAGTGCTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAGTGTGACACTACAGCtt                                                                                                                                                  >  1:334962/1‑148 (MQ=255)
 gCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGATAACTGATGTCTTTTTTTATTGTT‑TTTCTGTAAAAAAGTGCTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAGTGTGACACTACAGCtt                                                                                                                                                  <  1:381976/148‑1 (MQ=255)
 gCAATTTGGAATTTAGAAAAGCAAAATTATTATTTAAGACATTAGTGATAACTGATGTCTTTTTTTATTGTT‑TTTCTGTAAAAAAGTGCTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCGCAAAAGCGTGACACTACAGCtt                                                                                                                                                  >  1:783897/1‑148 (MQ=255)
  cAATATGGAATTTCGAACAGCAAAATTACTATTTAAGACATTATTGATAACTGATGTCTTTTTTTATTGTT‑TTTCTGTAAAAAAGTGCTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAGTGTGACACTACAGCttt                                                                                                                                                 <  1:979380/148‑1 (MQ=255)
   aaTTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGATAACTGATGTCTTTTTTTATTGTT‑TTTCTGTAAAAAAGTGCTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAGTGTGACACTACAGCTTTg                                                                                                                                                >  1:111781/1‑148 (MQ=255)
    aTTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGATAACTGATGTCTTTTTTTATTGTT‑TTTCTGTAAAAAAGTGCTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAGTGTGACACTACAGCTTTGt                                                                                                                                               <  1:1063298/148‑1 (MQ=255)
      tgggAATCTCGAAAAGCAAAATTATTATTTAAGACATTAGTGATAACTGATGTCTTTTTTTATTGTT‑TTTCTGTAAAAAAGTGCTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAGTGTGACACTACAGCTTTGTAt                                                                                                                                             <  1:1161448/146‑1 (MQ=255)
       tGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGATAACTGATGTCTTTTTTTATTGTT‑TTTCTGTAAAAAAGTGCTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAGTGTGACACTCCAGCTTTGTagg                                                                                                                                            >  1:957717/1‑146 (MQ=255)
               cGAAAAGCAAAATTATTATTTAAGACATTAGTGATAACTGATGTCTTTTTTTATTGTT‑TTTCTGTAAAAAAGTGCTGTCTTATTTTTGTGACAAATGCTGTATGTAGTTTCACGAAAGTGTGACACTACAGCTTTGGATGATATCACt                                                                                                                                    >  1:515437/1‑148 (MQ=255)
               cGAAAAGCAAAATTATTATTTAAGACATTAGTGATAACTGATGTCTTTTTTTATTGTT‑TTTCTGTAAAAAAGTGCTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAGTGTGACACTACAGCTTTGTATGATATCACt                                                                                                                                    >  1:810967/1‑148 (MQ=255)
                      cAAAATTATTATTTAAGACATTAGTGATAACTGATGTCTTTTTTTATTGTT‑TTTCTGTAAAAAAGTGCTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAGTGTGACACTACAGCTTTGTATGATATCACTTTAAAAt                                                                                                                             <  1:640041/148‑1 (MQ=255)
                        aaaTTATTATTTAAGACATTAGTGATAACTGATGTCTTTTTTTATTGTT‑TTTCTGTAAAAAAGTGCTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAGTGTGACACTACAGCTTTGTATGATATCACTTTAAAATaa                                                                                                                           <  1:1194000/148‑1 (MQ=255)
                            tattattTAAGACATTAGTGATAACTGATGTCTTTTTTTATTGTT‑TTTCTGTAAAAAAGTGCTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAGTGTGACACTACAGCTTTGTATGATATCACTTTAAAATAACTTa                                                                                                                       <  1:1087289/148‑1 (MQ=255)
                              ttattTAAGACATTAGTGATAACTGATGTCTTTTTTTATTGTT‑TTTCTGTAAAAAAGTGCTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAGTGTGACACTACAGCTTTGTATGATATCACTTTAAAATAACTTaaa                                                                                                                     >  1:54166/1‑148 (MQ=255)
                                attTAAGACATTAGTGAGAACTGATGTCTTTCTTTATCCTTCTTTCAG‑AAAAAAGTGCTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAGTGTGACACTACAGCTTTGTATGATATCACTTTAAAATAACTTAAAAc                                                                                                                   >  1:920229/1‑148 (MQ=25)
                                  ttAAGACATTAGTGATAACTGATGTCTTTTTTTATTGTT‑TTTCTGTAAAAAAGTGCTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAGTGTGACACTACAGCTTTGTATGATATCACTTTAAAATAACTTAAAAccc                                                                                                                 <  1:156000/148‑1 (MQ=255)
                                   tAAGACATTAGTGATAACTGATGTCTTTTTTTATTGTT‑TTTCTGTAAAAAAGTGCTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAGTGTGACACTACAGCTTTGTATGATATCACTTTAAAATAACTTAAAACCCt                                                                                                                <  1:23797/148‑1 (MQ=255)
                                     aGACATTAGTGATACCTGATGTCTTTTTTTATTGTT‑TTTCTGTAAAAAAGTGCTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAGTGTGACACTACAGCTTTGTATGATATCACTTTAAAATAACTTAAAACCCTTg                                                                                                              <  1:201798/148‑1 (MQ=255)
                                      gACATTAGTGATAACTGATGTCTTTTTTTATTGTT‑TTTCTGTAAAAAAGTGCTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAGTGTGACACTACAGCTTTGTATGATATCACTTTAAAATAACTTAAAACCCTTgg                                                                                                             >  1:1186908/1‑148 (MQ=255)
                                            aGTGATAACTGATGTCTTTTTTTATTGTT‑TTTCTGTAAAAAAGTGCTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAGTGTGACACTACAGCTTTGTATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTc                                                                                                       >  1:428302/1‑148 (MQ=255)
                                              tGATAACTGATGTCTTTTTTTATTGTT‑TTTCTGTAAAAAAGTGCTGTCTTATTTTTGTGACCAATGCTGTATGTAGTGTCACAAAAGTGTGACACTACAGCGTTGTATGATATCACTTTAAAATAACTTAAAACCCTTGGGATGTCTg                                                                                                     >  1:410980/1‑148 (MQ=255)
                                              tGATAACTGATGTCTTTTTTTATTGTT‑TTTCTGTAAAAAAGTGCTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAGTGTGACACTACAGCTTTGTATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTg                                                                                                     >  1:147300/1‑148 (MQ=255)
                                              tGATAACTGATGTCTTTTTTTATTGTT‑TTTCTGTAAAAAAGTGCTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAGTGTGACACTACAGCTGTGTATGATATCACTTTAACATCACTTAAAACCCTTGGAATGTCTg                                                                                                     <  1:700211/148‑1 (MQ=255)
                                              ggATAACTGATGTCTTTTTTTATTGTT‑TTTCTGCAGAAAAGTGCTATCGTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAGTGTGACACTACAGCTTTGTATGATATCACTTTTAAATAACTTAAAACCCTTGGAATGTCTg                                                                                                     <  1:651751/147‑1 (MQ=38)
                                                  aaCTGATGTCTTTTTTTATTGTT‑TTTCTGTAAAAAAGTGCTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAGTGTGACACTACAGCTTTGTATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCt                                                                                                 >  1:1005655/1‑148 (MQ=255)
                                                  aaCTGATGTCTTTTTTTATTGTT‑TTTCTGTAAAAAAGTGCTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAGTGTGACACTACAGCTTTGTATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCt                                                                                                 >  1:70369/1‑148 (MQ=255)
                                                   aCTGATGTCTTTTTTTATTGTT‑TATCTGTAAAAAAGTGCTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAGTGTGACACTACAGCTTTGTATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCtt                                                                                                <  1:906094/148‑1 (MQ=255)
                                                      gATGTCTTTTTTTATTGTT‑TTTCTGAAAAAAAGTGCTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAGTGTGACACTACAGCTTTGTATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGcc                                                                                             <  1:662358/148‑1 (MQ=255)
                                                        tgttattttttcttttt‑tttcttTAAAAAGGTGCAGTATTCTTTTGATTGCTCGGGCCTAATGTAGTGTCACAAAAGGGTGACACTAGAGCTTTGGATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAg                                                                                           <  1:1230672/143‑1 (MQ=255)
                                                        tGTCTTTTTTTATTGTT‑TTTCTGTAAAAAAGTGCTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAGTGTGACACTACAGCTTTGTATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAg                                                                                           <  1:1261540/148‑1 (MQ=255)
                                                        tGTCTTGTTTTATTGTT‑TTTCTGTAAAAAAGTGCTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAGTGTGACACTACAGCTTTGTATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAg                                                                                           <  1:884716/148‑1 (MQ=255)
                                                         gTCTTTTTTTATTGTT‑TTTCTGTAAAAAAGTGCTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAGTGTGACACTACAGCTTTGTATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGa                                                                                          >  1:865676/1‑148 (MQ=255)
                                                           cTTTTTTTATTGTT‑TTTCTGTAAAAAAGTGCTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAGTGTGACACTACAGCTTTGTATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATc                                                                                        >  1:947664/1‑148 (MQ=255)
                                                            tttttttATTGTT‑TTTCTGTAAAAAAGTGCTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAGTGTGACACTACAGCTTTGTATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCt                                                                                       <  1:440280/148‑1 (MQ=255)
                                                            tttttttATTGGT‑TTTCTGTAAAAAAGTGCTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAGTGTGACACTACAGCTTTGTATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCt                                                                                       <  1:182452/148‑1 (MQ=255)
                                                             ttttttATTGTT‑TTTCTGTAAAAAAGTGCTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAGTGTGACACTACAGCTTTGTATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTa                                                                                      >  1:891640/1‑148 (MQ=255)
                                                               ttttATTGTT‑TTTCTGTAAAAAAGTGCTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAGTGTGACACTACAGCTTTGTATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATc                                                                                    >  1:1013614/1‑148 (MQ=255)
                                                               ttttATTGTT‑TTTCTGTAAAAAAGTGCTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAGTGTGACACTACAGCTTTGTATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATc                                                                                    >  1:1017966/1‑148 (MQ=255)
                                                                tttATTGTT‑TTTCTGTAAAAAAGTGCTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAGTGTGACACTACAGCTTTGTATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCa                                                                                   <  1:389344/148‑1 (MQ=255)
                                                                tttATTGTT‑TTTCTGTAAAAAAGTGCTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAGTGTGACACTACAGCTTTGTATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCa                                                                                   <  1:581328/148‑1 (MQ=255)
                                                                   aTTGTT‑TTTCTGTAAAAAAGTGCTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAGTGTGACACTACAGCTTTGTATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCAttt                                                                                <  1:972807/148‑1 (MQ=255)
                                                                      gTT‑TTTCTGTAAAAAAGTGCTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAGTGTGACACTACAGCTTTGTATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTg                                                                             <  1:1143540/148‑1 (MQ=255)
                                                                       tt‑tttCTGTAAAAAAGTGCTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAGTGTGACACTACAGCTTTGTATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGa                                                                            <  1:363452/148‑1 (MQ=255)
                                                                        t‑tttCTGTAAAAAAGTGCTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAGTGTGACACTACAGCTTTGTATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGaa                                                                           >  1:137955/1‑148 (MQ=255)
                                                                          tttCTGTAAAAAAGTGCTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAGTGTGACACTACAGCTTTGTATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGAAt                                                                          >  1:218509/1‑148 (MQ=255)
                                                                          tttCTGTAAAAAAGTGCTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAGTGTGACACTACAGCTTTGTATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGAAt                                                                          >  1:494599/1‑148 (MQ=255)
                                                                          tttCTGTAAAAAAGTGCTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAGTGTGACACTACAACTTTGTATGATATCACTCTAAAATAACTTAAAACCCTTGGAATGTCTGACCTTGCCACATCTATCGGTTTTGGAt                                                                          >  1:35155/1‑148 (MQ=37)
                                                                            tCTGTAAAAAAGTGCTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAGTGTGACACTACAGCTTTGTATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGAATGa                                                                        <  1:755089/148‑1 (MQ=255)
                                                                                tAAAAAAGTGCTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAGTGTGACACTACAGCTTTGTATGATATCACTTTAAAATAACTTAACACCCTTGGACTGTCTGGCCTTGCCAGATCTATCATTTTTGAATGATAGc                                                                    >  1:120760/1‑148 (MQ=255)
                                                                                 aaaaaaGTGCTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAGTGTGACACTACAGCTTTGTATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGAATGATAGCa                                                                   <  1:211035/148‑1 (MQ=255)
                                                                                     aaGTGCTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAGTGTGACACTACAGCTTTGTATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGAATGATAGCAAAtt                                                               <  1:328037/148‑1 (MQ=255)
                                                                                      aGTGTTGTCTTATTTTTTTGACAAATGCTGTATGTAGTGTCACAAAAGTGTGACACTACAGCTTTGTATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGAATGATAGCAAAttt                                                              <  1:63073/148‑1 (MQ=255)
                                                                                      aGTGCTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAGTGTGACACTACAGCTTTGTATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCTTTGGAATGTCTATCATTTTTGAATGATAGCAAAttt                                                              <  1:301344/148‑1 (MQ=25)
                                                                                      aGTGCTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAGTGTGACACTACAGCTTTGTATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGAATGATAGCAAAttt                                                              <  1:796496/148‑1 (MQ=255)
                                                                                      aGTGCTGTCTTATTTTTGCGACAAATGCTGTATGTAGGGTCACAAAAGTGTGACACTACAGCTTTGTATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGAATGATAGCAAAttt                                                              <  1:293164/148‑1 (MQ=255)
                                                                                      aGTACTGTCATATAAGTGTGACAAATGCTGTATGTAGTGTCACAAAAGTGTGAAACTACAGCTTTGTATGATATCACTTTAAAACAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGAATGATAGCAAAttt                                                              <  1:340498/148‑1 (MQ=21)
                                                                                       gTGCTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAGTGTGACACTACAGCTTTGTATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTTATGGATAGACAAtttt                                                             >  1:67209/1‑147 (MQ=25)
                                                                                       gTGCTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAGTGTGACACTACAGCTTTGTATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGAATGATAGCAAATTTc                                                             <  1:1099113/148‑1 (MQ=255)
                                                                                       gTGCTGTCTTATTCTTGGGACAAACGCTGTATGTAGGGTCACAAAAGTGTGACACTACAGCTTTGTATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTGGCCAGATATTTCATTTTTGAATGATAGCAAATTTc                                                             <  1:248202/148‑1 (MQ=21)
                                                                                        tGCTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAGTGTGACACTACAGCTTTGTATGATATCACTTTAACATACACTGAATCCCTTGGAAATACATTTCTTGCCAGATCTATCATTTTTGAATGATAGCAAATTTcc                                                            <  1:1242695/148‑1 (MQ=21)
                                                                                        tGCTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAGTGTGACACTACAGCTTTGTATGAGATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGAATGATAGAAAATTTcc                                                            >  1:257604/1‑148 (MQ=255)
                                                                                        tGCTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAGTGTGACACTACAGCTATGTATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCTGATCTATCATTTTTGAATGATAGCAAATTTcc                                                            >  1:837722/1‑148 (MQ=255)
                                                                                        tGCTGGTTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAGTGTGACACTACAGCTTTGTATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGAATGATAGCAAATTTcc                                                            <  1:1204782/148‑1 (MQ=255)
                                                                                         gCTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAGTGTGACACTACAGCTTTGTATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGAATGATAGCAAATTTccc                                                           >  1:1043175/1‑148 (MQ=255)
                                                                                         gCTGTCTAATTTTTGTGACAAATGCTGTATGTAGCGTCACAAAAGTGTGACACTACAGCTTTGTATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGAATGATAGCAAATTTccc                                                           <  1:969937/148‑1 (MQ=255)
                                                                                           tGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAGTGTGACACTACAGCTTTGTATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGAATGATAGCAAATTTCCCtt                                                         >  1:22457/1‑148 (MQ=255)
                                                                                           tGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAGTGTGACACTACAGCTTTGTATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGAATGATAGCAAATTTCCCtt                                                         <  1:1048781/148‑1 (MQ=255)
                                                                                            gTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAGTGTGACACTACAGCTTTGTATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGAATGATAGCAAATTTCCCTTa                                                        >  1:1213859/1‑148 (MQ=255)
                                                                                                 aTTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAGTGTGACACTACAGCTTTGTATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGAATGATAGCAAATTTCCCTTATGctc                                                   <  1:1079682/148‑1 (MQ=255)
                                                                                                  ttttaGTGACAAATGCTGTATGTAGTGTCACAAAAGTGTGACACTACAGCTTTGTATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGAATGATAGCAAATTTCCCTTATGctct                                                  <  1:372151/148‑1 (MQ=255)
                                                                                                   ttttGTGACAAATGCTGTATGTAGTGTCACAAAAGTGTGACACTACAGCTTTGTATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGAATGATAGCAAATTTCCCTTATGCTCtt                                                 >  1:721014/1‑148 (MQ=255)
                                                                                                     ttGTGACAAATGCTGTATGTAGTGTCACAAAAGTGTGACACTACAGCTTTGTATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGAGCTATCATTTTTGAATGATAGCAAATTTCCCTTATGCTCTTAc                                               >  1:369890/1‑148 (MQ=255)
                                                                                                     ttGTGACAAATGCTGTATGTAGTGTCACAAAAGTGTGACACTACAGCTTTGTATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGCCCTTTCCAGATCTATCATTTTTGAATGATAGCAAATTTCCCTTATGCCCTTAc                                               >  1:236088/1‑148 (MQ=255)
                                                                                                           cAAATGCTGTATGTAGTGTCACAACAGTGTGACACTACAGATTTGTATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGAATGATAGCAAATTTCCCTTATGCTATTCCGgaggt                                         >  1:487649/1‑146 (MQ=255)
                                                                                                           cAAATGCTGTATGTAGTGTCACAAAAGTGTGACACTACAGCTTTGTATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGAATGAGAGCAAGTTGCCCTTATGCTCTTACGGAGAt                                         >  1:1033723/1‑148 (MQ=255)
                                                                                                             aaTGCTGTATGTAGTGTCACAAAAGTGTGACACTACAGCTTTGTATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGAATGATAGCAAATTTCCCTTATGCTCTTACGGAGAttt                                       <  1:563924/148‑1 (MQ=255)
                                                                                                              aTGCTGTATGTAGTGTCACAAAAGTGTGACACTACAGCTTTGTATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGAATGATAGCAAATTTCCCTTATGCTCTTACGGAGAtttt                                      <  1:11796/148‑1 (MQ=255)
                                                                                                               tgcttgatgtaGTGTCAAAAAAGTGTGACACTACAGCTTTGTATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGAATGATAGCAAATTTCCCTTATGCTCTTACGGAGATTTTa                                     <  1:470357/142‑1 (MQ=255)
                                                                                                               tGCTGTATGTAGTGTCACAAAAGTGTGACACTACAGCTTTGTATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTTTGGCCTTGCCAGATCTATCATTTTTGAATGATAGCAAATTTCCCTTATGCTCTTACGGAGATTTTa                                     <  1:593569/148‑1 (MQ=255)
                                                                                                               tGCTGTATGTAGTGTCACAAAAGTGTGACACTACAGCTTTGTATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGAATGATAGCAAATTTCCCTTATGCTCTTACGGAGATTTTa                                     <  1:609575/148‑1 (MQ=255)
                                                                                                               tGCGGTATGGAGTGCCAAAAAAGTGTGACACTACAGCTTTGTATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGAATGATAGCCAATTTCCCTTATGCTCTTACGGAGATTTTa                                     <  1:506851/148‑1 (MQ=18)
                                                                                                                  tgtatgtaGTGTCACAAAAGTGTGACACTACAGCTTTGTATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGAATGATAGCAAATTTCCCTTATGCTCTTACGGAGATTTTagag                                  <  1:1126257/148‑1 (MQ=255)
                                                                                                                       gtaGTGTCACAAAAGTGTGACACTACAGCTTTGTATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGAATGATAGCAAATTTCCCTTATGCTCTTACGGAGATTTTAGAGttaaa                             >  1:1138762/1‑148 (MQ=255)
                                                                                                                       gtaGTGTCACAAAAGTGTGACACTACAGCTTTGTATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGAATGATAGCAAATTTACCTTATGCTCTTACGGAGATTTTAGAGttaaa                             >  1:100013/1‑148 (MQ=255)
                                                                                                                          gtgtCACAAAAGTGTGACACTACCGCTTTGTATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGAATGATAGCAAATTTCCCTTATGCTCTTACGGGGATTTTAGAGttaaatta                          >  1:746649/1‑148 (MQ=255)
                                                                                                                            gtCACAAAAGTGTGACACTACAGCTTTGTATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGAATGATAGCAAATTTCCCTTATGCTCTTACGGAGATTTTAGAGttaaattaaa                        >  1:657407/1‑148 (MQ=255)
                                                                                                                             tCACAAAAGTGTGACACTACAGCTTTGTATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGAATGATAGCAAATTTCCCTTATGCTCTTACGGAGATTTTAGAGTTAAATTaaaa                       >  1:314218/1‑148 (MQ=255)
                                                                                                                              cacaAAAGTGTGACACTACAGCTTTGTATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGAATGATAGCAAATTTCCCTTATGCTCTTACGGAGATTTTAGAGTTAAATTAAAAt                      <  1:1112915/148‑1 (MQ=255)
                                                                                                                               acaAAAGTGTGACACTACAGCTTTGTATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGAATGATAGCAAATTTCCCTTTTGCTCTTACGGAGGTTTTAGAGTTAAATTAAAAtt                     >  1:619941/1‑148 (MQ=255)
                                                                                                                               acaAAAGTGTGACACTACAGCTTTGTATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGAATGATAGCAAATTTCCCTTATGCTCTTACGGAGATTTTAGAGTTAAATTAAAAtt                     <  1:263518/148‑1 (MQ=255)
                                                                                                                                 aaaaGTGTGACACTACAGCTTTGTATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGAATGATAGCAAATTTCCCTGATGCTCTTACGGAGATTTTAGAGTTAAATTAAAATTTc                   >  1:1172221/1‑148 (MQ=255)
                                                                                                                                  aaaGTGTGACACTACAGCTTTGTATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGAATGATAGCAAATTTCCCTTATGCTCTTACGGAGATTTTAGAGTTAAATTAAAATTTCt                  <  1:554730/148‑1 (MQ=255)
                                                                                                                                  aaaGTGTGACACTACAGCTTTGTATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGAATGATAGCAAATTTCCCTTATGCTCTTACGGAGATTTTAGAGTTAAATTAAAATTTCt                  <  1:454971/148‑1 (MQ=255)
                                                                                                                                  aaaGTGTGACACTACAGCTTTGTATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGAATGATAGCAAATTTCCCTTATGCTCTTACGGAGATTCTAGAGTTAAATTAAAATTTCt                  <  1:685420/148‑1 (MQ=255)
                                                                                                                                        tgACACTACAGCTTTGTATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGAATGATAGCAAATTTCCCTTATGCTCTTACGGAGATTTTAGAGTTCAATTAAAATTTCTAAGttc            <  1:1194738/148‑2 (MQ=255)
                                                                                                                                        tgACACTACAGCTTTGTATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGAATGATAGCAAATTTCCCTTATGCTCTTACGGAGATTTTAGAGTTAAATTAAAATTTCTAAGttt            <  1:132718/148‑1 (MQ=255)
                                                                                                                                        tgACACTACAGCTTTGTATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGAATGATAGCAAATTTCCCTTATGCTCTTACGGAGATTTCAGAGTTAAATTAAAATTTCTAAGttt            <  1:937728/148‑1 (MQ=255)
                                                                                                                                              tACAGCTTTGTATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGAATGATAGCAAATTTCCCTTATGCTCTTACGGAGATTTTAGAGTTAAATTAAAATTTCTAAGTTTTTGATa      >  1:169908/1‑148 (MQ=255)
                                                                                                                                                  |                                                                                                                                                   
CGCAATTTGGAATTTCGAAAAGCAAAATTATTATTTAAGACATTAGTGATAACTGATGTCTTTTTTTATTGTT‑TTTCTGTAAAAAAGTGCTGTCTTATTTTTGTGACAAATGCTGTATGTAGTGTCACAAAAGTGTGACACTACAGCTTTGTATGATATCACTTTAAAATAACTTAAAACCCTTGGAATGTCTGGCCTTGCCAGATCTATCATTTTTGAATGATAGCAAATTTCCCTTATGCTCTTACGGAGATTTTAGAGTTAAATTAAAATTTCTAAGTTTTTGATAAGAA  >  CP000731/1479‑1771

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.