New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	68659 =	61 (1.050)	3 (0.060)	3/258	5.8	5.3%	coding (775/852 nt)	USA300TCH1516_00061	hypothetical protein
	?	USA300TCH1516_ALE	= 68655	53 (1.040)					coding (771/852 nt)	USA300TCH1516_00061	hypothetical protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TATGTCCCGAAAGGGAACACCTGCCGATAACGCCCCGATAGAAAGTTTCCATTCCTCGCTAAAGTCTGAAACTTTTTACATCAATAATGAGCTTAATCACTCTAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAATAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAGTGCCCTAGGATTATAGGCTCTTTTG  >  USA300TCH1516_ALE/68511‑68801                                                                                                                                                 |                                                                                                                                                   tATGTCCCGAAAGGGAACACCTGCCGATAACGCCCCGATAGAAAGTTTCCATTCCTCGCTAAAGTCTGAAACTTTTTACATCAATAATGAGCTTAATCACTCTAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACaat                                                                                                                                                 <  1:372347/148‑1 (MQ=255)           aaGGGAACACCTGCCGATAACGCCCCGATAGAAAGTTTCCATTCCTCGCTAAAGTCTGAAACTTTTTACATCAATAATGAGCTTAATCACTCTAATCACATTGTAATAGATATTGTCGAAGCGCACATTAAAAACaataataataata                                                                                                                                       >  1:963818/1‑148 (MQ=255)           aaGGGAACACCTGCCGATAACGCCCCGATAGAAAGTTTCCATTCCTCGCTAAAGTCTGAAACTTTTTACATCAATAATGAGCTTAATCACTCTAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACaataataataata                                                                                                                                       >  1:863734/1‑148 (MQ=255)           aaGGGAACACCTGCCGATAACGCCCCGATAGAAAGTTTCCATTCCTCGCTAAAGTCTGAAACTTTTTACATCAATAATGAGCTTAATCACTCTAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACaataataataata                                                                                                                                       <  1:481144/148‑1 (MQ=255)           aaGGGAACACCTGCCGATAACGCCCCGATAGAAAGTTTCCATTCCTCGCTAAAGTCTGAAACTTTTTACATCAATAATGAGCTTAATCACTCTAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACaataataataata                                                                                                                                       <  1:718646/148‑1 (MQ=255)            aGGGAACACCTGCCGATAACGCCCCGATAGAAAGTTTCCATTCCTCGCTAAAGTCTGAAACTTTTTACATCAATAATGAGCTTAATCACTCTAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACaataataataataa                                                                                                                                      >  1:1257224/1‑148 (MQ=255)                       gCCGATAACGCCCCGATAGAAAGTTTCCATTCCTCGCTAAAGTCTGAAACTTTTTACATCAATAATGAGCTTAATCACTCTAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAATAATAATAATCGaa                                                                                                                           >  1:331140/1‑148 (MQ=255)                          gATAACGCCCCGATAGAAAGTTTCCATTCCTCGCTAAAGTCTGAAACTTTTTACATCAATAATGAGCTTAATCACTCTAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAATAATAATAATCGAATTc                                                                                                                        <  1:341139/148‑1 (MQ=255)                          gATAACGCCCCGATAGAAAGTTTCCATTCCTCGCTAAAGTCTGAAACTTTTTACATCAATAATGAGCTTAATCACTCTAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAATAATAATAATCGAATTc                                                                                                                        <  1:576535/148‑1 (MQ=255)                                    cGATAGAAAGTTTCCATTCCTCGCTAAAGTCTGAAACTTTTTACATCAATAATGAGCTTAATCACTCTAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAATAATAATAATCGAATTCAACAAAAACt                                                                                                              <  1:1159331/148‑1 (MQ=255)                                        aGAAAGTTTCCATTCCTCGCTAAAGTCTGAAACTTTTTACATCAATAATGAGCTTAATCACTCTAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAATAATAATAATCGAATTCAACAAAAACTAGGc                                                                                                          <  1:354541/148‑1 (MQ=255)                                           aaGTTTCCATTCCTCGCTAAAGTCTGAAACTTTTTACATCAATAATGAGCTTAATCACTCTAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAATAATAATAATCGAATTCAACAAAAACTAGGCTAc                                                                                                       <  1:124679/148‑1 (MQ=255)                                           aaGTTGCCACTCCTCGCTAAAGTCTGAAACTTTTTACATCAATAATGAGCTTAATCACTCTAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAATAATAATAATCGAATTCAACAAAAACTAGGCTAc                                                                                                       <  1:363529/148‑1 (MQ=255)                                            aGTTTCCATTCCTCGCTAAAGTCTGAAACTTTTTACATCAATAATGAGCTTAATCACTCTAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAATAATAATAATCGAATTCAACAAAAACTAGGCTACt                                                                                                      >  1:197021/1‑148 (MQ=255)                                               ttCCATTCCTCGCTAAAGTCTGAAACTTTTTACATCAATAATGAGCTTAATCACTCTAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAATAATAATAATCGAATTCAACAAAAACTAGGCTACTTAt                                                                                                   <  1:390221/148‑1 (MQ=255)                                               ttCCATCCCTCGCTAAAGTCTGAAACTTTTTACATCAATAATGAGCTTAATCACTCTAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAATAATAATAATCGAATTCAACAAAAACTAGGCTACTTAt                                                                                                   <  1:532145/148‑1 (MQ=255)                                                   aTTCCTCGCTAAAGTCTGAAACTTTTTACATCAATAATGAGCTTAATCACTCTAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAATAATAATAATCGAATTCAACAAAAACTAGGCTACTTATcccc                                                                                               <  1:1136229/148‑1 (MQ=255)                                                   aTTCCTCGCGAAAGTCTTAAACTTTTTACATCAATAATGAGCTTAATCACTCTAATCACATTGTAATAGATATTGTCGAAAAGTACACTAAAAACAATAATAATAATAATAATAATCGAATTCAACAAAAACTAGGCTACTTATcccc                                                                                               <  1:843564/148‑1 (MQ=255)                                                      ccTCGCTAAAGTCTGAAACTTTTTACATCAATAATGAGCTTAATCACTCTAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAATAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGt                                                                                            >  1:307594/1‑148 (MQ=255)                                                        tCGCTAAAGTCTTAAACTTTTTACATCAATAATGAGGTTAATCACTCTAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAATAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTaa                                                                                          <  1:345909/148‑1 (MQ=255)                                                         cGCTAAAGTCTGAAACTTTTTACATCAATAATGAGCTTAATCACTCTAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAATAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTaaa                                                                                         >  1:799007/1‑148 (MQ=255)                                                         cGCTAAAGTCTGAAACTTTTTACATCAATAATGAGCTTAATCACTCTAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAATAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTaaa                                                                                         <  1:292268/148‑1 (MQ=255)                                                         cGCTAAAGTCTGAAACTTTTTACATCAATAATGAGCTTAATCACTCTAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAATAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTCTaaa                                                                                         >  1:995293/1‑148 (MQ=255)                                                         cGCTAAAGTCTGAAACTTTTTACATCAATAATGAGCTTAATAACGGCAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAAC‑‑‑AAGAATAATAATAATAATCGAATTAAAAAAAAAATAGGCTACTTATCCCCTGTgaaaaa                                                                                      >  1:602745/1‑146 (MQ=14)                                                          gCTAAAGTCTGAAACTTTTTACATCAATAATGAGCTTAATCACTCTAATCACATTGTAATAGATATTGTCGAAAAGTACATTAACAACAATAATAATACTAAAAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTaaaa                                                                                        <  1:1243758/148‑1 (MQ=255)                                                              aaGCCTGAAACTTTTTACATCAATAATGAGCTTAATCACTCTAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAAGAATAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACa                                                                                    <  1:485867/148‑1 (MQ=255)                                                                gTCTGAAACTTTTTACATCAATAATGAGCTTAATCACTCTAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAATAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACaga                                                                                  >  1:874189/1‑148 (MQ=255)                                                                    gAAACTTTTTACATCAATAATGAGCTTAATCACTCTAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAATAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAAt                                                                              <  1:1061550/148‑1 (MQ=255)                                                                    gAAACTTTTTACATCAATAATGAGCTTAATCACTCTAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAATAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAAt                                                                              >  1:802656/1‑148 (MQ=255)                                                                    gAAACTTTTTACATCAATAATGAGCTTAATCACTCTAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAATAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAAt                                                                              <  1:188552/148‑1 (MQ=255)                                                                    gAAACTTTTTACATCAATAATGAGCTTAATCACTCTAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAATAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAAt                                                                              <  1:11117/148‑1 (MQ=255)                                                                     aaaCTTTTTACATCAATAATGAGCTTAATCACTCTAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAATAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAAtt                                                                             >  1:155130/1‑148 (MQ=255)                                                                       aCTTTTTACATCAATAATGAGCTTAATCACTCTAATCACATTGTACTAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAATAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTaa                                                                           >  1:806513/1‑148 (MQ=255)                                                                       aCTTTTTACATCAATAATGAGCTTAATCACTCTAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAATAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTaa                                                                           >  1:1123608/1‑148 (MQ=255)                                                                          ttttACATCAATAATGAGCTTAATCACTCTAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAATAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAg                                                                        <  1:12444/148‑1 (MQ=255)                                                                             tACATCAATAATGAGCTTAATCACTCTAATCACATTGTAATAGATATTGTTGAAAAGTACATTAAAAACAATAATAATAATAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCt                                                                     >  1:550827/1‑148 (MQ=255)                                                                             tACATCAATAATGAGCTTAATCACTCTAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAATAATAATAATCGAATTGAACAAAAACTAGGCGACTTATCAACTGTAAAATACAGGTAATTAATAGcca                                                                     >  1:225220/1‑147 (MQ=25)                                                                             tACATCAATAATGAGCTTAATCACTCTAATCACATTGTAATAGATATTGTCAAAAAATACATTAAAAACAATAATAATAATAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCt                                                                     >  1:980499/1‑148 (MQ=255)                                                                                  cAATAATGAGCTTAATCACTCTAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAATAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAAc                                                                >  1:32/1‑148 (MQ=255)                                                                                     taatGAGCTTAATCACTCTAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAATAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATg                                                             <  1:461643/148‑1 (MQ=255)                                                                                      aatGAGCTTAATCACTCTAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAATAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATgg                                                            >  1:387045/1‑148 (MQ=255)                                                                                      aatGAGCTTAATCACTCTAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAATAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACACgg                                                            >  1:696429/1‑148 (MQ=255)                                                                                                       tAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAATAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTcc                                           >  1:78002/1‑148 (MQ=255)                                                                                                       tAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAATAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAAAACATGGTGTTTTTATTAAGTTcc                                           >  1:617705/1‑148 (MQ=255)                                                                                                          tCACATTGTAATAGATATTGTCGAAAAGTAAATTAAAAACAATAATAATAATAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGt                                        <  1:651100/148‑1 (MQ=255)                                                                                                           cacaCTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAATAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGtt                                       <  1:531968/148‑1 (MQ=255)                                                                                                            acaTTGTAATAAATATTGTCAAAAAGTACATTAAAAAC‑‑‑AATAATAATAATAATAATCGAATTCAACAAAAACTAGGCTACTTACCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGCTTTTATTAAGTTCCCGTTTTaa                                   <  1:215736/148‑1 (MQ=18)                                                                                                                     tAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAATAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATACCCTCGAACAAGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTc                             >  1:230399/1‑148 (MQ=255)                                                                                                                          agtGTCGAAAAGTACATTAAAAACAATAATAATAATAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAGTGc                        <  1:547569/146‑1 (MQ=255)                                                                                                                               cGAAAAGTACATTAAAAACAATAATAATAATAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAGTGCCCTAg                   >  1:1224463/1‑148 (MQ=255)                                                                                                                               cGAAAAGTACATTAAAAACAATAATAATAATAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAGTGCCCTAg                   >  1:580798/1‑148 (MQ=255)                                                                                                                                   aaGTACATTAAAAAC‑‑‑AATAATAATAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAGTGCCCTAGGATtata            <  1:592308/148‑1 (MQ=255)                                                                                                                                   aaGGACACTAAAAACAATAATAATAATAATAATAAACGAATTCAACAAAACCTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAGTGCCCTAGGAtt               <  1:61480/148‑1 (MQ=255)                                                                                                                                    aGTACATTAAAAACAATAATAATAATAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAGTGCCCTAGGATta              <  1:415834/148‑1 (MQ=255)                                                                                                                                        tctcaaaaaCAATCATCCTAATAAAAACAATCCAATTCAACAAACGATAGGCAACTTCTCCCCTGCAAAATACAGAGAACTACTAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTCAAGGGTTCAGTGCCCTAGGATTATAgg          <  1:881349/144‑1 (MQ=17)                                                                                                                                        cATTAAAAACAATAATAATAATAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATTGTGTTTTTATTAAGTTCCGGTTTTCAGGGTTCAGTGCCCTAGGATTATAgg          <  1:686999/148‑1 (MQ=255)                                                                                                                                        cATTAAAAACAATAATAATAATAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTCTTAAGTTCCCGTTTTAAGGGTTCAGAGCCCTAGGATTATAgg          >  1:79132/1‑148 (MQ=255)                                                                                                                                        cATTAAAAACAATAATAATAATAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAGTGCCCTAGGATTATAgg          <  1:777734/148‑1 (MQ=255)                                                                                                                                         aatAAAAACAATAATAATAATAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAGTGCCCTAGGATTATAGGc         <  1:814906/146‑1 (MQ=255)                                                                                                                                         aTTAAAAACAATAATAATAATAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAGTGCCCTAGGATTATAGGc         <  1:888898/148‑1 (MQ=255)                                                                                                                                               aaCAATAATAATAATAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAGTGCCCTAGGATTATAGGCTCtttt   >  1:169298/1‑148 (MQ=255)                                                                                                                                                aCAATAATAATAATAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAGTAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAGTGCCCTAGGATTATAGGCTCTTTTg  <  1:1223467/148‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                                   TATGTCCCGAAAGGGAACACCTGCCGATAACGCCCCGATAGAAAGTTTCCATTCCTCGCTAAAGTCTGAAACTTTTTACATCAATAATGAGCTTAATCACTCTAATCACATTGTAATAGATATTGTCGAAAAGTACATTAAAAACAATAATAATAATAATAATAATCGAATTCAACAAAAACTAGGCTACTTATCCCCTGTAAAATACAGAGAATTAATAGCCTAGAACATGGTGTTTTTATTAAGTTCCCGTTTTAAGGGTTCAGTGCCCTAGGATTATAGGCTCTTTTG  >  USA300TCH1516_ALE/68511‑68801

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.