| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 1,218,719 | Δ1 bp | 9.3% | intergenic (+210/+53) | USA300HOU_RS06065 → / ← USA300HOU_RS06070 | hypothetical protein/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 1,218,719 | 0 | C | . | 9.3% | 659.3 / 54.8 | 194 | intergenic (+210/+53) | USA300HOU_RS06065/USA300HOU_RS06070 | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base C (79/97); new base . (2/16); total (81/113) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.27e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.37e-01 | |||||||||||
Only 100 of 202 total aligned reads displayed.
AAGATAATTTGTAACTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAG > USA300TCH1516_ALE/1218629‑1218809 | aaGATAATTTGTAACTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCAc < 1:2759825/91‑1 (MQ=255) gATAATTTGTAACTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAGCGCATTAAATAATAAATAAACACCTCACCa > 2:2811165/1‑91 (MQ=255) gATAATTTGTAACTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCa > 1:1091055/1‑91 (MQ=255) aTAATTTGTAACTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCAt < 2:3860974/91‑1 (MQ=255) aTAATTTGTAACTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCAt < 1:1996697/91‑1 (MQ=255) aTTTGTAACTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTCAATAATAAATAAACACCTCACCATAAg > 2:262713/1‑91 (MQ=255) aTTTGTAACTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAg > 1:1874390/1‑91 (MQ=255) ttGTAACTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGaa < 1:336840/91‑1 (MQ=255) aCTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAgtag < 2:3797258/91‑4 (MQ=255) cTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGact > 2:2974548/1‑91 (MQ=255) cTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGact > 1:297554/1‑91 (MQ=255) ttAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGacta < 2:1448929/91‑1 (MQ=255) aaaTGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGactact < 1:897259/91‑1 (MQ=255) aaaTGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGactact < 2:1567803/91‑1 (MQ=255) tgatgaTACGTTATTTACAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTActttc < 1:3387426/91‑1 (MQ=255) gatgatACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTActttct < 1:3944412/91‑1 (MQ=255) gatgatACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTActttct < 1:1200044/91‑1 (MQ=255) gatgatACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCA‑CAAAAGAAAGTAGTCctttctt < 2:3108491/91‑1 (MQ=25) gatgatACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCA‑CAAAAGAAAGTAGTCctttctt < 2:2913815/91‑1 (MQ=25) atgatACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTActttctt < 1:3111272/91‑1 (MQ=255) atgatACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCA‑CAAAAGAAAGTAGTCctttctta < 2:1249390/91‑2 (MQ=21) tgatACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCA‑CAAAAGAAAGTAGTCctttcttat < 2:2036942/91‑3 (MQ=21) tACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑Ttgt < 2:1649225/91‑1 (MQ=255) cGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGa < 1:2374706/91‑1 (MQ=255) cGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCA‑CAAAAGAAAGTAGTCCTTTCTT‑Atggtga < 2:3889438/91‑5 (MQ=18) cGTTATTCAACAACACGATGCTTCTTTCCACAGGACGCATTAAAGAATAAATAAACTCCTCACCATAAGAAAGAAATACTTTCTT‑TTGTGa < 2:3078643/91‑1 (MQ=255) tATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGgt < 2:8990/91‑1 (MQ=255) tATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGgt > 2:2658682/1‑91 (MQ=255) tATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCA‑CAAAAGAAAGTAGTCCTTTCTTATGGTGAGgt < 1:330213/91‑1 (MQ=17) tATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCA‑CAAAAGAAAGTAGTCCTTTCTTATGGTGAGgt < 2:2922554/91‑1 (MQ=17) tATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCA‑CAAAAGAAAGTAGTCCTTTCTTATGGTGAGgt < 1:3837020/91‑1 (MQ=17) aTTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGgtg < 2:2006080/91‑1 (MQ=255) tttAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGgtgt < 1:3225306/91‑1 (MQ=255) tttAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGgtgt < 1:2711618/91‑1 (MQ=255) tttAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGgtgt < 2:3849328/91‑1 (MQ=255) ttAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGtt < 1:2209285/91‑1 (MQ=255) tAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGttt < 1:77144/91‑1 (MQ=255) tAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGttt < 1:258738/91‑1 (MQ=255) aaaCACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTAtt > 2:3409846/1‑91 (MQ=255) aaaCACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTAtt < 2:2671691/91‑1 (MQ=255) aaCACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTAttt > 1:3925925/1‑91 (MQ=255) acacGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGGGGTGTTTATTTg < 1:3054373/91‑1 (MQ=255) acacGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTg < 2:3654933/91‑1 (MQ=255) acacGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCA‑CAAAAGAAAGTAGTCCTTTCTTATGGTGAGGTGTTTAttta < 1:3448576/91‑2 (MQ=11) cacGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGt > 2:2582816/1‑91 (MQ=255) cacGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGt < 2:1184768/91‑1 (MQ=255) acGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTc > 1:1896132/1‑91 (MQ=255) cGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCg > 1:642275/1‑91 (MQ=255) aTACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGAc < 2:2909669/91‑1 (MQ=255) aTACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGAc > 1:3612745/1‑91 (MQ=255) tACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACa < 2:3172885/91‑1 (MQ=255) tCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGAGAGGTGTTTATTTGTCGACAACtt > 2:1650773/1‑91 (MQ=255) cGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTg > 2:260586/1‑91 (MQ=255) cGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTg < 2:3580994/91‑1 (MQ=255) gTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGa > 1:577277/1‑91 (MQ=255) gTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGa > 1:2048889/1‑91 (MQ=255) gTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGa > 1:3088542/1‑91 (MQ=255) ttCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGAtt > 1:1010180/1‑91 (MQ=255) tCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTa < 1:1831263/91‑1 (MQ=255) aaTGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATg > 2:2278476/1‑91 (MQ=255) aTGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGa > 2:1836424/1‑91 (MQ=255) aTGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGa > 1:3010014/1‑91 (MQ=255) gAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGAtt < 2:1682575/91‑1 (MQ=255) aaCGCATTAAATAATAAATAAGCACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAAGTGTTTATTTGACGACAACTTGATTATGATTg < 2:483669/91‑1 (MQ=255) aCGCATTAAATAATAAATAAACACCTCGCCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGt < 2:2729102/91‑1 (MQ=255) aCGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGt > 1:2514477/1‑91 (MQ=255) aCGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGt > 1:115873/1‑91 (MQ=255) cGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGtt < 1:3325662/91‑1 (MQ=255) cGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGtt < 2:60259/91‑1 (MQ=255) cGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGtt < 1:3916519/91‑1 (MQ=255) cGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGtt < 2:1027553/91‑1 (MQ=255) cGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGtt < 2:2128678/91‑1 (MQ=255) cGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACGTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGtt < 1:2280618/91‑1 (MQ=255) aTTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCa > 2:3827661/1‑91 (MQ=255) aTTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCa > 2:1837502/1‑91 (MQ=255) aataataaataaACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCAtttt < 1:1641885/91‑1 (MQ=255) ataataaataaACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCAttttt > 1:357487/1‑91 (MQ=255) taataaataaACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCAtttttt < 1:1379458/91‑1 (MQ=255) aataaataaACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTg < 2:2073925/91‑1 (MQ=255) ataaataaACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGa < 1:1612640/91‑1 (MQ=255) taaataaaCACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGaa < 2:3382182/91‑1 (MQ=255) aataaaCACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATa > 1:472804/1‑91 (MQ=255) ataaaCACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATaa < 1:2930624/91‑1 (MQ=255) ataaaCACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATaa > 2:245107/1‑91 (MQ=255) taaaCACCTTACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGATTAAg > 1:1121913/1‑91 (MQ=255) taaaCACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTCTTTGAATacg > 2:3620574/1‑89 (MQ=255) aaCACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGtt > 1:46993/1‑91 (MQ=255) aaCACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGtt < 2:1963755/91‑1 (MQ=255) aaCACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGtt < 2:77982/91‑1 (MQ=255) aaCACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGtt < 1:701587/91‑1 (MQ=255) acCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCAt < 1:2638266/91‑1 (MQ=255) ccTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATa > 2:434273/1‑91 (MQ=255) ccTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATa < 2:1144837/91‑1 (MQ=255) cTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGTTTTTGTTCATat > 2:3737702/1‑90 (MQ=255) cTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATaa > 1:1275346/1‑91 (MQ=255) cACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATc < 1:2456342/91‑1 (MQ=255) aCCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCa > 2:2489810/1‑91 (MQ=255) aCCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCa < 2:1531724/91‑1 (MQ=255) ccATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAg > 1:3577161/1‑91 (MQ=255) ccATAAGAAAGGACTACTTTCTA‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAg > 1:3709309/1‑91 (MQ=255) | AAGATAATTTGTAACTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAG > USA300TCH1516_ALE/1218629‑1218809 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |