| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 1,421,619 | Δ1 bp | 7.2% | intergenic (+55/+85) | pepF1_2 → / ← phoU | Oligoendopeptidase F, plasmid/Phosphate‑specific transport system accessory protein PhoU |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 1,421,619 | 0 | T | . | 7.2% | 855.4 / 54.3 | 262 | intergenic (+55/+85) | pepF1_2/phoU | Oligoendopeptidase F, plasmid/Phosphate‑specific transport system accessory protein PhoU |
| Reads supporting (aligned to +/- strand): ref base T (124/116); new base . (15/4); total (141/121) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.97e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 269 total aligned reads displayed.
AAATTAACAGATGAAATTGAGCAAGCAAATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTTATAGTAATAACTTTAAGTTATTG > USA300TCH1516_ALE/1421529‑1421709 | aaTTAACAGATGAAATTGAGCAAGCAAATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAAtt < 1:459555/91‑1 (MQ=255) aaTTAACAGATGAAATTGAGCAAGCAAATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAAtt > 2:2469107/1‑91 (MQ=255) aTTAACAGATGAAATTGAGCAAGCAAATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATtg > 1:537807/1‑91 (MQ=255) ttAACAGATGAAATTGAGCAAGCAAATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATtgt < 1:1505755/91‑1 (MQ=255) ttAACAGATGAAATTGAGCAAGCAAATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATtgt < 2:2874761/91‑1 (MQ=255) aaCAGATGAAATTGAGCAAGCAAATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTga > 1:1740393/1‑91 (MQ=255) tcAGATGAAATTGAGCAAGCAAATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTgag < 2:3927884/90‑1 (MQ=255) aCAGATGAAATTGAGCAAGCAAATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTgag > 2:1339813/1‑91 (MQ=255) aCAGATGAAATTGAGCAAGCAAATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTgag > 2:2016187/1‑91 (MQ=255) aCAGATGAAATTGAGCAAGCAAATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTgag > 1:3640930/1‑91 (MQ=255) aCAGATGAAATTGAGCAAGCAAATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTgag > 1:3499566/1‑91 (MQ=255) aGATGAAATTGAGCAAGCAAATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCCC‑ATTACTAATTGTGAGaa > 2:2783442/1‑91 (MQ=255) gATGAAATTGAGCAAGCAAATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAAt < 2:657978/91‑1 (MQ=255) gATGAAATTGAGCAAGCAAATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAAt > 1:1704375/1‑91 (MQ=255) aTGAAATTGAGCAAGCAAATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATc < 2:83355/91‑1 (MQ=255) aaTTGAGCAAGCAAATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTgg < 2:1757071/91‑1 (MQ=255) aTTGAGCAAGCAAATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGt < 2:1401605/91‑1 (MQ=255) tGAGCAAGCAAATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGttt > 2:3463679/1‑91 (MQ=255) gcaagcaaATAACTAAGATGCGAGACAATTTATAGTAGAACAATATACACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGtttttt < 1:2131477/91‑1 (MQ=255) gcaagcaaATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGtttttt < 1:3432738/91‑1 (MQ=255) caagcaaATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGttttttt > 2:3564908/1‑91 (MQ=255) caagcaaATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGttttttt > 2:1532282/1‑91 (MQ=255) caagcaaATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGttttttt < 2:488310/91‑1 (MQ=255) aagcaaATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTg < 2:1857342/91‑1 (MQ=255) aagcaaATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTg < 1:1098936/91‑1 (MQ=255) aagcaaATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTg < 2:2146947/91‑1 (MQ=255) caaATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAgg < 1:2281496/91‑1 (MQ=255) aTAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGtt < 2:2086903/91‑1 (MQ=255) aTAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGtt > 1:675605/1‑91 (MQ=255) tAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGttt < 1:3926344/91‑1 (MQ=255) aCTAAGATGCGAGACAATTTATAGTAGCACAATATAAACCAAGATTTTCAC‑ATTACTAAGTGTGAGAATCTTGGGTTTGATGAGGGGTTAt > 1:3585246/1‑91 (MQ=255) cTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATg > 1:1481480/1‑91 (MQ=255) aGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGaat > 2:2492960/1‑91 (MQ=255) aGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGaat < 1:1580552/91‑1 (MQ=255) aGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGaat < 2:1276230/91‑1 (MQ=255) aGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGaat < 1:2882078/91‑1 (MQ=255) aTGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGaataa < 1:673818/91‑1 (MQ=255) aTGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGaataa < 1:3774040/91‑1 (MQ=255) tGCGAGACAATTTATAGTAGAACAATATAAACTAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGaataat < 1:3370748/91‑1 (MQ=255) agaCAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGaa > 1:2154306/1‑91 (MQ=255) agaCAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGaa > 1:2576916/1‑91 (MQ=255) gaCAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGaaa < 1:3204035/91‑1 (MQ=255) gaCAATGTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGaaa < 2:1076708/91‑1 (MQ=255) tataGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAatatatat > 1:1201671/1‑91 (MQ=255) ataGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATAtt > 2:589462/1‑91 (MQ=255) ataGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATAtt > 2:2673720/1‑91 (MQ=255) tagAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCCTGGTTTTTTTGTGGGTTTTTGAATAATAGAAATAGATATTTATc > 2:2543210/1‑91 (MQ=255) agAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGCTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCg > 2:2327535/1‑91 (MQ=255) aCAATATAAACCAATATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTaa < 2:2128450/91‑1 (MQ=255) aCAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTaa < 1:2695533/91‑1 (MQ=255) cAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAg < 1:1353270/91‑1 (MQ=255) aaTATAAACCAAGGTTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAgg < 2:2381812/91‑1 (MQ=255) aaTATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAgg < 2:1907179/91‑1 (MQ=255) aaTATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAgg < 2:310216/91‑1 (MQ=255) aaTATAAACCAAGATGTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAgg < 1:1283752/91‑1 (MQ=255) tataAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGa > 1:756261/1‑91 (MQ=255) ataAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATCCTTATCGTAAGGGAt > 2:646929/1‑91 (MQ=255) ataAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGAt > 2:901977/1‑91 (MQ=255) ataAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGAt < 1:3729485/91‑1 (MQ=255) aaaCCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGAttt > 1:1892842/1‑91 (MQ=255) aaaCCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGAttt < 2:3738257/91‑1 (MQ=255) aaaCCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGAttt > 1:653130/1‑91 (MQ=255) aaCCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGAtttt > 2:1781863/1‑91 (MQ=255) aaCCAAGATTCTCACAATTAGTAA‑TGTGAAAATCTTGG‑TTTTTTGAGGGTTTATGAATAATAGACATATATATTTATCGTAAGGGATTTta > 1:2871837/1‑91 (MQ=18) aaCCAAGATTCTCACAATTAGTAA‑TGTGAAAATCTTGG‑TTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTta > 1:1002238/1‑91 (MQ=18) aCCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTta > 2:3136506/1‑91 (MQ=255) aCCAAGATTCTCACAATTAGTAA‑TGTGAAAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGAtttga > 1:819584/1‑89 (MQ=21) aCCAAGATTCTCACAATTAGTAA‑TGTGAAAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTta > 1:3258251/1‑91 (MQ=21) aGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTTATAGt > 2:1363444/1‑91 (MQ=255) aGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTTATAGt < 2:3300074/91‑1 (MQ=255) aGATTCTCACAATTAGTAA‑TGTGAAAATCTTGGTTTTTTTGCGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTTATAGt > 2:3003447/1‑91 (MQ=21) aGATTCTCACAATTAGTAA‑TGTGAAAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTCAGGGATTTTATAGt > 2:2627261/1‑91 (MQ=21) aTTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTTATAGtaa < 1:2390302/91‑1 (MQ=255) ttttCAC‑GTTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTTATAGtaat < 2:3510106/91‑1 (MQ=255) ttttCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGACTAATAGAAATATATATTTATCGTAAGGGATTTTATAGtaat < 2:3001485/91‑1 (MQ=255) ttttCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTTATAGtaat > 1:3400636/1‑91 (MQ=255) ttttCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTTATAGtaat > 1:3000722/1‑91 (MQ=255) tttCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTTATAGtaata > 2:375319/1‑91 (MQ=255) tttCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTTATAGtaata > 2:3402215/1‑91 (MQ=255) ttCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTTATAGtaataa > 2:3395743/1‑91 (MQ=255) ttCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTTATAGtaataa > 1:3165704/1‑91 (MQ=255) cac‑aTTACTAATTGTGAGCATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTTATAGTAATAACt > 1:2171763/1‑91 (MQ=255) cac‑aTTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTTATAGTAATAACt > 2:2822258/1‑91 (MQ=255) cac‑aTTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTTATAGTAATAACt > 2:727675/1‑91 (MQ=255) cac‑aTTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTTATAGTAATAACt > 1:1051044/1‑91 (MQ=255) ac‑aTTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTTATAGTAATAACtt > 1:1251581/1‑91 (MQ=255) ac‑aTTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTTATAGTAATAACtt > 1:1530486/1‑91 (MQ=255) ac‑aTTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTTATAGTAATAACtt > 1:2344572/1‑91 (MQ=255) c‑aTTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTTATAGTAATAACttt < 1:2928046/91‑1 (MQ=255) tACTAATTGTGAGAAGCTTGGTTTTGGTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTTATAGTAATAACTTTAAg < 2:3422998/91‑1 (MQ=255) aCTAATTGTGAGAATCTTGGTTTTTTTTTTTTTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTTATAGTAATAACTTTAAGt > 2:2207721/1‑91 (MQ=255) aCTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTTATAGTAATAACTTTAAGt > 1:632754/1‑91 (MQ=255) cgaaTTGTGAAAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTTATAGTAATAACTTTAAGtt < 2:1170823/89‑1 (MQ=255) aaTTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTTATAGTAATAACTTTAAGTTAt < 1:1944738/91‑1 (MQ=255) aaTTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTTATAGTAATAACTTTAAGTTAt < 1:885341/91‑1 (MQ=255) aaTTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTTATAGTAATAACTTTAAGTTAt < 2:1739184/91‑1 (MQ=255) aTTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTTATAGTAATAACTTTAAGTTAtt > 1:1834181/1‑91 (MQ=255) aTTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTTATAGTAATAACTTTAAGTTAtt < 2:3173499/91‑1 (MQ=255) aTTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTTATAGTAATAACTTTAAGTTAtt > 1:2515089/1‑91 (MQ=255) ttGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTTATAGTAATAACTTTAAGTTATTg > 2:3600620/1‑91 (MQ=255) | AAATTAACAGATGAAATTGAGCAAGCAAATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTTATAGTAATAACTTTAAGTTATTG > USA300TCH1516_ALE/1421529‑1421709 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |