| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 2,309,807 | Δ1 bp | 10.4% | coding (62/1032 nt) | yfiZ_2 ← | putative siderophore transport system permease protein YfiZ |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 2,309,807 | 0 | G | . | 10.4% | 771.6 / 84.4 | 231 | coding (62/1032 nt) | yfiZ_2 | putative siderophore transport system permease protein YfiZ |
| Reads supporting (aligned to +/- strand): ref base G (107/100); new base . (9/15); total (116/115) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.03e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.83e-01 | |||||||||||
Only 100 of 242 total aligned reads displayed.
TATCGCTAAAATTAATTTTCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCATTTACTTCCACCTTACTTTTGTTCTTTTTT > USA300TCH1516_ALE/2309718‑2309897 | cGCTAAAATTAATTTTCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGtgttgt < 2:2789696/91‑1 (MQ=255) gCTAAAATTAATTTTCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAACACTCACGTATATA‑GTGAGT‑Ttgtg < 1:520259/91‑1 (MQ=25) gCTAAAATTAATTTTCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTtgtg > 2:772813/1‑91 (MQ=255) cTAAAATTAATTTTCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGc < 2:2664332/91‑1 (MQ=255) tAAAATTAATTTTCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCg > 2:3837805/1‑91 (MQ=255) tAAAATTAATTTTCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAG‑ACGCACAACACTCACGTATATA‑GTGAGT‑TTGTGctt < 1:252818/91‑3 (MQ=17) tAAAATTAATTTTCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAG‑ACGCACAACACTCACGTATATA‑GTGAGT‑TTGTGctt < 1:2468624/91‑3 (MQ=17) tAAAATTAATTTTCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAG‑ACGCACAACACTCACGTATATA‑GTGAGT‑TTGTGctt < 2:2117023/91‑3 (MQ=17) aaaaTTAATTTTCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAACACTCACGTATATA‑GTGAGT‑TTGTGctt < 2:1603282/91‑3 (MQ=21) aaaaTTAATTTTCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAACACTCACGTATATA‑GTGAGT‑TTGTGctt < 1:2333842/91‑3 (MQ=21) aaaaTTAATTTTCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGt < 1:3736597/91‑1 (MQ=255) aaaaTTAATTTTCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAG‑ACGCACAACACTCACGTATATA‑GTGAGT‑TTGTGcttt < 1:3636025/91‑4 (MQ=12) aaaTTAATTTTCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGtc < 1:275243/91‑1 (MQ=255) aaaTTAATTTTCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAG‑ACGCACAACACTCACGTATATA‑GTGAGT‑TTGTGctttc < 2:557892/91‑5 (MQ=9) aaaTTAATTTTCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAG‑ACGCACAACACTCACGTATATA‑GTGAGT‑TTGTGctttc < 1:3487516/91‑5 (MQ=9) aattaattTTCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAACACTCACGTATATA‑GTGAGT‑TTGTGctttc < 2:2423895/91‑5 (MQ=21) aattaattTTCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGtct < 1:3720102/91‑1 (MQ=255) attTTCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGtctttttc < 1:3852239/91‑1 (MQ=255) attTTCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGtctttttc < 2:379097/91‑1 (MQ=255) attTTCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGtctttttc > 1:768196/1‑91 (MQ=255) ttttCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATCCGTGAGTGTTGTGCGtctttttct > 2:3682411/1‑91 (MQ=255) ttttCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGtctttttct > 2:20820/1‑91 (MQ=255) ttttCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGtctttttct > 1:1132302/1‑91 (MQ=255) tttCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGtctttttctt > 1:3550661/1‑91 (MQ=255) tCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGtctttttctttt < 1:874771/91‑1 (MQ=255) tCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGtctttttctttt > 1:242024/1‑91 (MQ=255) gaagaaCCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTAt < 2:2831337/91‑1 (MQ=255) aagaaCCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATg < 1:56633/91‑1 (MQ=255) agaaCCAATCGCCATATTTAAATATATACGAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGa < 2:511500/91‑1 (MQ=255) gaaCCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGAt > 2:2951750/1‑91 (MQ=255) gaaCCAATCGCCATATTTAAATATATACAAAAAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGAt > 1:3512689/1‑91 (MQ=255) aCCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCt < 1:1612811/91‑1 (MQ=255) ccAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTa > 1:2639021/1‑91 (MQ=255) ccAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTa > 1:308611/1‑91 (MQ=255) aTCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATgg < 2:2229970/91‑1 (MQ=255) tCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGc > 2:3842766/1‑91 (MQ=255) tCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGc < 1:433185/91‑1 (MQ=255) atatTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGAtt > 1:197711/1‑91 (MQ=255) atatTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGAtt < 1:688681/91‑1 (MQ=255) atatTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGCGTTGTGCGTCTTTTTCTATTATGATCTATGGCAGAtt > 1:1043593/1‑91 (MQ=255) tatTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTg < 2:2720261/91‑1 (MQ=255) tttAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGc < 1:158162/91‑1 (MQ=255) ttAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCt < 2:185554/91‑1 (MQ=255) ttAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCt > 2:1486773/1‑91 (MQ=255) tAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTa < 2:1549342/91‑1 (MQ=255) aaaTATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTAc > 2:470797/1‑91 (MQ=255) aaaTATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTAc < 1:1269482/91‑1 (MQ=255) aaaTATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTAc > 2:1307787/1‑91 (MQ=255) aaTATATACAAATAAGTAGAAAGCACAA‑AGTCAC‑TATATTCGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACt < 2:3866868/91‑1 (MQ=255) aaTATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACt < 2:1126498/91‑1 (MQ=255) aaTATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACt > 1:205486/1‑91 (MQ=255) aaTATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACt > 1:3600779/1‑91 (MQ=255) atatatACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACtt < 1:431294/91‑1 (MQ=255) tatataCAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTa > 1:2092059/1‑91 (MQ=255) tatataCAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTa > 1:2939283/1‑91 (MQ=255) atataCAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTAt < 1:277234/91‑1 (MQ=255) ataCAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTAttt > 2:2780124/1‑91 (MQ=255) aCAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCt < 1:1389189/91‑1 (MQ=255) aaaTAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCttt > 1:588176/1‑91 (MQ=255) aaaaaGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTtata < 1:2672384/91‑1 (MQ=255) aaaaGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAg > 1:2427784/1‑91 (MQ=255) aaaaGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTAGTTCTTTTATAg > 1:3584696/1‑91 (MQ=255) aaagaaagCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGc < 1:2210745/91‑1 (MQ=255) aaagaaagCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATCTCTTTCATAGc > 2:1832044/1‑91 (MQ=255) aagaaagCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGcc < 1:3335573/91‑1 (MQ=255) aagaaagCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGcc < 1:1521376/91‑1 (MQ=255) aagaaagCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGca < 2:1401614/91‑2 (MQ=255) agaaagCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCa < 1:3307957/91‑1 (MQ=255) gaaagCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCAt > 2:462479/1‑91 (MQ=255) aaagCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCAtt < 1:1064512/91‑1 (MQ=255) aaagCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCAtt < 1:3228388/91‑1 (MQ=255) aagCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCAttt > 2:253248/1‑91 (MQ=255) agCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCATTTa < 2:63598/91‑1 (MQ=255) gCACAACACTCACGTATATA‑GTGAGT‑TTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCATTTAc > 1:2539788/1‑91 (MQ=25) gCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCATTTAc > 2:1286443/1‑91 (MQ=255) gCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCATTTAc > 2:3214787/1‑91 (MQ=255) acaA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCATTTACtt > 2:3136810/1‑91 (MQ=255) acaA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCATTTACtt > 1:341470/1‑91 (MQ=255) acaA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCATTTACtt > 2:3067490/1‑91 (MQ=255) caA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCATTTACTTc > 1:2238552/1‑91 (MQ=255) aCTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCATTTACTTCCAc > 1:1875147/1‑91 (MQ=255) tCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTCATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCATTTACTTCCACCt < 2:3907542/91‑1 (MQ=255) cacgtatata‑GTGAGT‑TTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCATTTACTTCCACCTTa > 1:4036/5‑91 (MQ=255) cacgtatata‑GTGAGT‑TTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCATTTACTTCCACCTTa > 2:3250788/5‑91 (MQ=255) acgtatata‑GTGAGT‑TTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCATTTACTTCCACCTTAc > 1:2563624/4‑91 (MQ=255) aC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGTAGATTGGCTACTTATTTCTTTTATAGCCATTTACTTCCACCTTa < 2:3492072/91‑1 (MQ=255) aC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCATTTACTTCCACCTTa > 2:1370446/1‑91 (MQ=255) c‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATTGCAGATTGTCTACTTATTTCTTTTATAGCCATTTACTTTCACCtttc > 2:820275/1‑89 (MQ=255) c‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCATTTACTTCCACCTTAc > 2:736639/1‑91 (MQ=255) tataCGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCATTTACTTCCACCTTACttt < 2:2680949/91‑1 (MQ=255) taCGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCATTTACTTCCACCTTACTTTTg > 2:305658/1‑91 (MQ=255) cGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCATTTACTTCCACCTTACTTTTGtt > 2:3584155/1‑91 (MQ=255) gTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCATTTACTTCCACCTTACTTTTGTTc < 2:1620726/91‑1 (MQ=255) gTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCATTTACTTCCACCTTACTTTTGTTc > 2:2021997/1‑91 (MQ=255) tGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCATTTACTTCCACCTTACTTTTGTTCt < 1:1385298/91‑1 (MQ=255) tGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCATTTACTTCCACCTTACTTTTGTTCt < 2:592269/91‑1 (MQ=255) gAGTGTTGTGCGTCTTTTTTTTTTATTTTCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCATTTACTTCCACCTTACTTTTGTTCtt > 2:3088317/1‑91 (MQ=255) gAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCATTTACTTCCACCTTACTTTTGTTCtt < 1:3822300/91‑1 (MQ=255) gtgtTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCATTTACTTCCACCTTACTTTTGTTCtttt > 1:1085042/1‑91 (MQ=255) gttgtGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCATTTACTTCCACCTTACTTTTGTTCtttttt > 1:3906016/1‑91 (MQ=255) | TATCGCTAAAATTAATTTTCGAAGAACCAATCGCCATATTTAAATATATACAAATAAAAAGAAAGCACAA‑ACTCAC‑TATATACGTGAGTGTTGTGCGTCTTTTTCTTTTATGATCTATGGCAGATTGGCTACTTATTTCTTTTATAGCCATTTACTTCCACCTTACTTTTGTTCTTTTTT > USA300TCH1516_ALE/2309718‑2309897 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |