| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 2,430,685 | Δ1 bp | 11.6% | intergenic (‑109/‑276) | suhB_2 ← / → birA_2 | Inositol‑1‑monophosphatase/Bifunctional ligase/repressor BirA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 2,430,685 | 0 | T | . | 11.6% | 758.4 / 87.9 | 242 | intergenic (‑109/‑276) | suhB_2/birA_2 | Inositol‑1‑monophosphatase/Bifunctional ligase/repressor BirA |
| Reads supporting (aligned to +/- strand): ref base T (92/121); new base . (2/26); total (94/148) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.25e-04 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 248 total aligned reads displayed.
TATCATTATCATTTTATTATTACCCTATATTAAAAGAATCAACAATACAACTGAAGACTTCTTCATTTTATGCATAAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTAACTTGAACGATTAAAAGCTATCTGTTAT > USA300TCH1516_ALE/2430595‑2430775 | tatcattatcatTTTATTATTACCCTATATTAAAAGAATCAACAATACAACTGAAGACTTCTTCATTTTATGCATAAAAAAATCGGCTAGt > 1:193048/1‑91 (MQ=255) atcattatcattTTATTATTACCCTATATTAAAAGAATCAACAATACAACTGAAGACTTCTTCATTTTATGCATAAAAAAATCGGCTAGta > 2:3865401/1‑90 (MQ=255) atcattatcattTTATTATTACCCTATATTAAAAGAATCAACAATACAACTGAAGACTTCTTCATTTTATGCATAAAAAAATCGGCTAGTc > 2:752049/1‑91 (MQ=255) tcattatcattTTATTATTACCCTATATTAAAAGAATCAACAATACAACTGAAGACTTCTTCATTTTATGCATAAAAAAATCGGCTAGTCa < 1:3309204/91‑1 (MQ=255) tcattatcattTTATTATTACCCTATATTAAAAGAATCAACAATACAACTGAAGACTTCTTCATTTTATGCATAAAAAAATCGGCTAGTCa < 1:2890740/91‑1 (MQ=255) cattatcattTTATTATTACCCTATATTAAAAGAATCAACAATACAACTGAAGACTTCTTCATTTTATGCATAAAAAAATCGGCTAGTCAc > 2:1940329/1‑91 (MQ=255) cattatcattTTATTATTACCCTATATTAAAAGAATCAACAATACAACTGAAGACTTCTTCAATATATGCATAAAAAAATCGGCTAGTCAc < 2:590770/91‑1 (MQ=255) ttatcattTTATTATTACCCTATATTAAAAGAATCAACAATACAACTGAAGACTTCTTCATTTTATGCATAAAAAAATCGGCTAGTCACGt > 1:3396877/1‑91 (MQ=255) ttatcattTTATTATTACCCTATATTAAAAGAATCAACAATACAACTGAAGACTTCTTCATTTTATGCATAAAAAAATCGGCTAGTCACGt > 2:2887862/1‑91 (MQ=255) ttatcattTTATTATTACCCTATATTAAAAGAATCAACAATACAACTGAAGACTTCTTCATTTTATGCATAAAAAAATCGGCTAG‑CACGTg < 2:641295/91‑1 (MQ=255) ttatcattTTATTATTACCCTATATTAAAAGAATCAACAATACAACTGAAGACTTCTTCATTTTATGCATAAAAAAATCGGCTAG‑CACGTg < 1:920912/91‑1 (MQ=255) ttagcattTTATGATCGCCCGATATTAAAGGAATCAACAATACAGCTGACGACTTCTTCATTTTATGCATAAAAAAATCGGCTAGTCACGt < 1:2276706/91‑1 (MQ=255) tatcattTTATTATTACCCTATATTAAAAGATTCAACAATATAACTGAAGACTTCTTCATTTTATGCATAAAAAAATCGGCTAG‑CACGTga < 2:3480229/91‑2 (MQ=255) tatcattTTATTATTACCCTATATTAAAAGAATCAACAATACCACTGAAGACTTCTTCATTTTATGCATAAAAAAATCGGCTAGTCACGTg < 2:1858428/91‑1 (MQ=255) tatcattTTATTATTACCCTATATTAAAAGAATCAACAATACAACTGAAGACTTCTTCATTTTATGCATAAAAAAATCGGCTAGTCACGTg < 1:3506381/91‑1 (MQ=255) tatcattTTATTATTACCCTATATTAAAAGAATCAACAATACAACTGAAGACTTCTTCATTTTATGCATAAAAAAATCGGCTAGTCACGTg < 2:2343757/91‑1 (MQ=255) tatcattTTATTATTACCCTATATTAAAAGAATCAACAATACAACTGAAGACTTCTTCATTTTATGCATAAAAAAATCGGCTAGTCACGTg < 1:2135208/91‑1 (MQ=255) tcattTTATTATTACCCTATATTAAAAGAATCAACAATACAACTGAAGACTTCTTCATTTTATGCATAAAAAAATCGGCTAG‑CACGTgact < 1:882797/91‑4 (MQ=255) tcattTAATTATTACCCTATAGTAAAAGAATCAACAATACAACTGAAGCCTTCTTCATTTTATGCATAAAAAAATCGGCTAG‑CACGTgact < 2:1707085/91‑4 (MQ=255) attTTATTATTACCCTATATTAAAAGAATCAACAATACAACTGAAGACTTCTTCATTTTATGCATAAAAAAATCGGCTAGTCACGTG‑CTAg > 2:2510066/1‑91 (MQ=255) attTTATTATTACCCTATATTAAAAGAATCAACAATACAACTGAAGACTTCTTCATTTTATGCAT‑AAAAAATCGGCTAGTCACGTG‑CTAGc > 1:2793939/1‑91 (MQ=255) ttttATTATTACCCTATATTAAAAGAATCAACAATACAACTGAAGACTTCTTCATTTTATGCATAAAAAAATCGGCTAGTCACGTG‑CTAGc > 1:935582/1‑91 (MQ=255) tttATTATTACCCTATATTAAAAGAATCAACAATACAACTGAAGACTTCTTCATTTTATGCATAAAAAAATCGGCTAGTCACGTG‑CTAGcc > 2:2796561/1‑91 (MQ=255) tttATTATTACCCTATATTAAAAGAATCAACAATACAACTGAAGACTTCTTCATTTTATGCATAAAAAAATCGGCTAGTCACGTG‑CTAGcc < 2:2943725/91‑1 (MQ=255) ttattattaCCCTATATTAAAAGAATCAACAATACAACTGAAGACTTCTTCATTTTATGCATAAAAAAATCGGCTAG‑CACGTGACTAGCCg < 1:2993700/91‑1 (MQ=255) tattattaCCCTATATTGAAAGAATCAACAATACAACGGAAGACTTCTTCATTTTATGCATAAAAAAATCGGCTAG‑CACGTGACTAGCCGa < 2:413033/91‑1 (MQ=255) tattattaCCCTATATTAAAAGAATCAACAATACAACTGAAGACTTCTTCATTTTATGCATAAAAAAATCGGCTAGTCACGTG‑CTAGCCGa > 1:3851684/1‑91 (MQ=255) tattattaCCCTATATTAAAAGAATCAACAATACAACTGAAGACTTCTTCATTTTATGCATAAAAAAATCGGCTAG‑CACGTGACTAGCCGa < 1:427403/91‑1 (MQ=255) attattaCCCTATATTAAAAGAATCAACAATACAACTGAAGACTTCTTCATTTTATGCATAAAAAAATCGGCTAGTCACGTG‑CTAGCCGAc < 2:2844353/91‑1 (MQ=255) ttattaCCCTATATTAAAAGAATCAACAATACAACTGAAGACTTCTTCATTTTATGCATAAAAAAATCGGCTAGTCACGTG‑CTAGCCGACa < 1:2393644/91‑1 (MQ=255) attaCCCTATATTAAAAGAATCAACAATACAACTGAAGACTTCTTCATTTTATGCATAAAAAAATCGGCTAGTCACGTG‑CTAGCCGACaaa < 1:517919/91‑1 (MQ=255) ttaCCCTATATTAAAAGAATCAACAATACAACTGAAGACTTCTTCATTTTATGCATAAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAAt > 1:1537799/1‑91 (MQ=255) ttaCCCTATATTAAAAGAATCAACAATACAACTGAAGACTTCTTCATTTTATGCATAAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAAt > 1:2615108/1‑91 (MQ=255) taCCCTATATTAAAAGAATCAACAATACAACTGAAGACTTCTTCATTTTATGCATAAAAAAATCGACTAGTCACGTG‑CTAGCCGACAAATa > 2:3458292/1‑91 (MQ=255) aCCCTATATTAAAAGAATCAACAATACAACTGAAGACTTCTTCATTTTATGCATAAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAg > 1:1352114/1‑91 (MQ=255) cccTATATTAAAAGAATCAACAATACAGCGGAAGACTTCTTCATTTTATGCATAAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAga < 2:1708306/91‑1 (MQ=255) cccTATATTAAAAGAATCAACAATACAACTGAAGACTTCTTCATTTTATGCATAAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAga < 1:1010817/91‑1 (MQ=255) cccTATATTAAAAGAATCAACAATACAACTGAAGACTTCTTCAGTTTATGCATAAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAga < 2:3271763/91‑1 (MQ=255) tatTAAAAGAATCAACAATACAACTGAAGACTTCTTCATTTTATGCATAAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAgaaagga < 2:3012771/91‑1 (MQ=255) tatTAAAAGAATCAACAATACAACTGAAGACTTCTTCATTTTATGCATAAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAgaaagga < 2:1023756/91‑1 (MQ=255) ttAAAAGAATCAACAATACAACTGAAGACTTCTTCATTTTATGCATAAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAgaaaggaaa > 2:314356/1‑91 (MQ=255) ttAAAAGAATCAACAATACAACTGAAGACTTCTTCATTTTATGCATAAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAgaaaggaaa > 1:2461897/1‑91 (MQ=255) ttAAAAGAATCAACAATACAACTGAAGACTTCTTCATTTTATGCATAAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAgaaaggaaa < 1:3188849/91‑1 (MQ=255) aaGAATCAACAATACAACTGAAGACTTCTTCATTTTATGCATAAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAaagtaa > 2:3655138/1‑91 (MQ=255) aaGAATCAACAATACAACTGAAGACTTCTTCATTTTATGCATAAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAaagtaa > 2:2475667/1‑91 (MQ=255) aaGAATCAACAATACAACTGAAGACTTCTTCATTTTATGCATAAAAAAATCGGCGAGTCACGTG‑CTAGCCGACAAATAGAAAGGAaagtac > 2:3915600/1‑90 (MQ=255) aaTCAACAATACAACTGAAGACTTCTTCATTTTATGCATAAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAagtaagta < 1:1416841/91‑1 (MQ=255) aaTCAACAATACAACTGAAGACTTCTTCATTTTATGCATAAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAagtaagta < 2:3779706/91‑1 (MQ=255) tCAACAATACAACTGAAGACTTCTTCATTTTATGCATAAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGtaat > 1:3656824/1‑91 (MQ=255) tCAACAATACAACTGAAGACTTCTTCATTTTATGCATAAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGtaat < 1:1238239/91‑1 (MQ=255) tCAACAATACAACTGAAGACTTCTTCATTTTATGCATAAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGtaat > 1:2546948/1‑91 (MQ=255) tCAACAATACAACTGAAGACTTCTTCATTTTATGCATAAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGtaat < 1:797387/91‑1 (MQ=255) caacaaTACAACTGAAGACTTCTTCATTTTATGCATAAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGtaata < 1:1131828/91‑1 (MQ=255) caacaaTACAACTGAAGACTTCTTCATTTTATGCATAAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGtaata < 2:2835710/91‑1 (MQ=255) caacaaTACAACTGAAGACTTCTTCATTTTATGCATAAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGtaata < 2:2998681/91‑1 (MQ=255) acaaTACAACTGAAGACTTCCTCATTTTATGCATAAAAAAATCGGCTAGTCACGTG‑CTCGCCGACAAAGAGAAAGGAAAGTAAGTaataaa > 2:211857/1‑91 (MQ=255) aTACAACTGAAGACTTCTTCATTTTATGCATAAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAatat > 2:1460287/1‑91 (MQ=255) tACAACTGAAGACTTCTTCATTTTATGCATAAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATAtt < 2:1177284/91‑1 (MQ=255) tACAACTGAAGACTTCTTCATTTTATGCATAAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATAtt > 1:3088303/1‑91 (MQ=255) tACAACTGAAGACTTCTTCATTTTATGCATAAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATAtt > 1:2966998/1‑91 (MQ=255) cAACTGAAGACTTCTTCATTTTATGCATAAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGa < 1:2742239/91‑1 (MQ=255) aaCTGAAGACTTCTTCATTTTATGCATAAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGaa < 2:3142920/91‑1 (MQ=255) aCTGAAGACTTCTTCATTTTATGCATAAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAg > 2:2205898/1‑91 (MQ=255) aCTGAAGACTTCTTCATTTTATGCATAAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAg < 1:2044593/91‑1 (MQ=255) cTGAAGACTTCTTCATTTTATGCATAAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGCAAGTAAGTAATAAATATTGAAGa > 2:721570/1‑91 (MQ=255) cTGAAGACTTCTTCATTTTATGCATAAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGa > 1:353606/1‑91 (MQ=255) tGAAGACTTCTTCATTTTATGCATAAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGAt > 2:2250687/1‑91 (MQ=255) aaGACTTCTTCATTTTATGCATAAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGAtgt < 1:3348169/91‑1 (MQ=255) aGACTTCTTCATTTTATGCATAAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGAtgtt < 2:1615471/91‑1 (MQ=255) aGACTTCTTCATTTTATGCATAAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGAtgtt < 1:1068196/91‑1 (MQ=255) tcttcATTTTATGCATAAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGAt < 1:687713/91‑1 (MQ=255) cttcATTTTATGCATAAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATg < 1:2904139/91‑1 (MQ=255) cttcATTTTATGCATAAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATg > 1:1810837/1‑91 (MQ=255) tcATTTTATGCATAAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTa > 2:449600/1‑91 (MQ=255) ttttATGCATAAAAAAATCGGCTAGTCCCGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGCAGATGTTGTGATGTAACt > 2:3845676/1‑91 (MQ=255) ttttATGCATAAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTAACt < 1:45620/91‑1 (MQ=255) aTGCATAAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTAACTTGaa < 2:295596/91‑1 (MQ=255) tGCATAAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTAACTTGAAc < 2:2717785/91‑1 (MQ=255) tGCATAAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTAACTTGAAc < 1:3000857/91‑1 (MQ=255) tGCATAAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTAACTTGAAc < 1:1010073/91‑1 (MQ=255) tGCATAAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTAACTTGAAc < 2:838419/91‑1 (MQ=255) tGCATAAAAAAATCGACTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAACAAATATTGAAGATGTTGTGATGTAACTTGAAc > 1:3365647/1‑91 (MQ=255) cATAAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTAACTTGAACGa > 2:3325318/1‑91 (MQ=255) aTAAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTAACTTGAACGAt > 1:32285/1‑91 (MQ=255) tAAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTAACTTGAACGAtt < 1:1896163/91‑1 (MQ=255) tAAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTAACTTGAACGAtt < 2:2013987/91‑1 (MQ=255) aaaaTCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTAACTTGAACGATTaaaa > 1:3910940/1‑91 (MQ=255) aaaTCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTAACTTGAACGATTAAAAg < 1:3933286/91‑1 (MQ=255) aaaTCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTAACTTGAACGATTAAAAg < 1:3727706/91‑1 (MQ=255) aTCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTAACTTGAACGATTAAAAGCt > 2:1409898/1‑91 (MQ=255) cGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTAACTTGAACGATTAAAAGCTAt < 2:3060960/91‑1 (MQ=255) cGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTAACTTGAACGATTAAAAGCTAt > 2:3960612/1‑91 (MQ=255) cGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTAACTTGAACGATTAAAAGCTAt < 2:868892/91‑1 (MQ=255) cGGCTAG‑CACGTGACTAGCCGATAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTAACTTGAACGATTAAAAGCTAt > 1:2251183/1‑91 (MQ=255) cTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTAACTTGAACGATTAAAAGCTATCTg > 1:148767/1‑91 (MQ=255) cTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTAACTTGAACGATTAAAAGCTATCTg > 2:2880211/1‑91 (MQ=255) cTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTAACTTGAACGATTAAAAGCTATCTg > 2:1541867/1‑91 (MQ=255) tAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTAACTTGAACGATTAAAAGCTATCTGt < 1:3456762/91‑1 (MQ=255) tAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTAACTTGAACGATTAAAAGCTATCTGt > 1:2147802/1‑91 (MQ=255) aGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTAACTTGAACGATTAAAAGCTATCTGtt > 2:2288446/1‑91 (MQ=255) | TATCATTATCATTTTATTATTACCCTATATTAAAAGAATCAACAATACAACTGAAGACTTCTTCATTTTATGCATAAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTAACTTGAACGATTAAAAGCTATCTGTTAT > USA300TCH1516_ALE/2430595‑2430775 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |