| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 2,561,495 | Δ1 bp | 5.7% | coding (546/807 nt) | cpdA ← | 3',5'‑cyclic adenosine monophosphate phosphodiesterase CpdA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 2,561,495 | 0 | A | . | 5.7% | 641.4 / 28.9 | 193 | coding (546/807 nt) | cpdA | 3',5'‑cyclic adenosine monophosphate phosphodiesterase CpdA |
| Reads supporting (aligned to +/- strand): ref base A (96/86); new base . (2/9); total (98/95) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.12e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.78e-01 | |||||||||||
Only 100 of 208 total aligned reads displayed.
AAAGGATTGAAATCACTTGTCCCAATAAATGCATTATAAAAATCGAATATACGATGCGGCATAGGAACAATGAAATCAGGGTGCGTCACAACATG‑TGTGACTAAAATCACTCGTCTATTTCCTACTTCTAATATATCTTTCTTCACTTGTTCAGCCGCTATTTTAGATAAATTTTGATCT > USA300TCH1516_ALE/2561406‑2561585 | aaaGGATTGAAATCACTTGTCCCAATAAATGCATTATAAAAATCGAATATACGATGCGGCATAGGAACAATGAAATCAGGGTGCGTCacaa < 2:942950/91‑1 (MQ=255)aaaGGATTGAAATCACTTGTCCCAATAAATGCATTATAAAAATCGAATATACGATGCGGCATAGGAACAATGAAATCAGGGTGCGTCacaa < 1:2384307/91‑1 (MQ=255) aaGGATTGAAATCACTTGTCCCAATAAATGCATTATAAAAATCGAATATACGATGCGGCATAGGAACAATGAAATCAGGGTGCGTCacaac < 2:807277/91‑1 (MQ=255) aGGATTGAAATCACTTGTCCCAATAAATGCATTATAAAAATCGAATATACGATGCGGCATAGGAACAATGAAATCAGGGTGCGTCacaaca < 2:1065173/91‑1 (MQ=255) ggATTGAAATCACTTGTCCCAATAAATGCATTATAAAAATCGAATATACGATGCGGCATAGGAACAATGAAATCAGGGTGCGTcacacatg < 1:3356845/91‑5 (MQ=255) gATTGAAATCACTTGTCCCAATAAATGCATTATAAAAATCGAATATACGATGCGGCATAGGAACAATGAAATCAGGGTGCGTCACAACAtg > 1:3212560/1‑91 (MQ=255) aTTGAAATCACTTGTCCCAATAAATGCATTATAAGAATCGAATATACGATGCGGCATAGGAACAATGAAATCAGGGTGCGTCAC‑ACAtg‑tt < 2:1608287/91‑2 (MQ=255) aTTGAAATCACTTGTCCCAATAAATGCATTATAAAAATCGAATATACGATGCGGCATAGGAACAATGAAATCAGGGTGCGTCACAACAtg‑t < 2:3295987/91‑1 (MQ=255) aTTGAAATCACTTGTCCCAATAAATGCATTATAAAAATCGAATATACGATGCGGCATAGGAACAATGAAATCAGGGTGCGTCACAACAtg‑t > 1:2790324/1‑91 (MQ=255) aTTGAAATCACTTGTCCCAATAAATGCATTATAAAAATCGAATATACGATGCGGCATAGGAACAATGAAATCAGGGTGCGTCAC‑ACAtg‑tt < 1:3639292/91‑2 (MQ=255) aTTGAAATCACTTGTCCCAATAAATGCATTATAAAAAGCGAATCTACGATGCGGCATAGGAACAATGAAATCAGGGTGCGTCAC‑ACAtg‑tt < 1:3945343/91‑2 (MQ=255) ttGAAATCACTTGTCCCAATAAATGCATTATAAAAATCGAATATACGATGCGGCATAGGAACAATGAAATCAGGGTGCGTCAC‑ACAtg‑ttg < 2:2871283/91‑3 (MQ=255) ttGAAATCACTTGTCCCAATAAATGCATTATAAAAATCGAATATACGATGCGGCATAGGAACAATGAAATCAGGGTGCGTCAC‑ACAtg‑ttg < 2:322745/91‑3 (MQ=255) ttGAAATCACTTGTCCCAATAAATGCATTATAAAAATCGAATATACGATGCGGCATAGGAACAATGAAATCAGGGTGCGTCAC‑ACAtg‑ttg < 1:2578139/91‑3 (MQ=255) ttGAAATCACTTGTCCCAATAAATGCATTATAAAAATCGAATATACGATGCGGCATAGGAACAATGAAATCAGGGTGCGCCACAACAtg‑tg > 2:1992814/1‑91 (MQ=255) gAAATCACTTGTCCCAATAAATGCATTATAAAAATCGAATATACGATGCGGCATAGGAACAATGAAATCAGGGTGCGTCACAACAtg‑tgtg > 1:796629/1‑91 (MQ=255) aaaTCACTTGTCCCAATAAATGCATTATAGAAATCGAATATACGATGCGGCATAGGAACAATGAAATCAGGGTGCGTCACAACATG‑TGTGa < 1:1444193/91‑1 (MQ=255) aaaTCACTTGTCCCAATAAATGCATTATAAAAATCGAATATACGATGCGGCATAGGAACAATGAAATCAGGGTGCGTCACAACATG‑TGTGa > 2:1302708/1‑91 (MQ=255) aaaTCACTTGTCCCAATAAATGCATTATAAAAATCGAATATACGATGCGGCATAGGAACAATGAAATCAGGGTGCGTCACAACATG‑TGTGa > 2:1274744/1‑91 (MQ=255) aaaTCACTTGTCCCAATAAATGCATTATAAAAATCGAATATACGATGCGGCATAGGAACAATGAAATCAGGGTGCGTCACAACATG‑TGTGa > 1:497940/1‑91 (MQ=255) aaTCACTTGTCCCAATAAATGCATTATAAAAATCGAATATACGATGCGGCATAGGAACAATGAAATCAGGGTGCGTCACAACATG‑TGTGAc > 1:226435/1‑91 (MQ=255) tCACTTGTCCCAATAAATGCATTATAAAAATCGAATATACGATGCGGCATAGGAACAATGAAATCAGGGTGCGTCACAACATG‑TGTGACTa < 1:2789221/91‑1 (MQ=255) cACTTGTCCCAATAAATGCATTATAAAAATCGAATATACGATGCGGCATAGGAACAATGAAATCAGGGTGCGTCACAACATG‑TGTGACTaa < 1:2308321/91‑1 (MQ=255) aCTTGTCCCAATAAATGCATTATAAAAATCGAATATACGATGCGGCATAGGAACAATGAAATCAGGGTGCGTCACAACATG‑TGTGACTaaa < 2:2490604/91‑1 (MQ=255) aCTTGTCCCAATAAATGCATTATAAAAATCGAATATACGATGCGGCATAGGAACAATGAAATCAGGGTGCGTCACAACATG‑TGTGACTaaa < 2:3070526/91‑1 (MQ=255) cTTGTCCCAATAAATGCATTATAAAAATCGAATATACGATGCGGCATAGGAACAATGAAATCAGGGTGCGTCACAACATG‑TGTGACTaaaa < 2:3385320/91‑1 (MQ=255) cTTGTCCCAATAAATGCATTATAAAAATCGAATATACGATGCGGCATAGGAACAATGAAATCAGGGTGCGTCACAACATG‑TGTGACTaaaa < 1:821066/91‑1 (MQ=255) tCCCAATAAATGCATTATAAAAATTGAATATACGATGCGGCATAGGAACAATGAAATCAGGGTGCGTCACAACATG‑TGTGACTAAAATCAc < 2:3679613/91‑1 (MQ=255) tCCCAATAAATGCATTATAAAAATCGAATATACGATGCGGCATAGGAACAATGAAATCAGGGTGCGTCACAACATG‑TGTGACTAAAATCAc < 1:2720378/91‑1 (MQ=255) ccAATAAATGCATTATAAAAATCGAATATACGATGCGGCATAGGAACAATGAAGTCAGGGTGCGTCACAACATG‑TGTGACTAAAATCACTc < 1:3346163/91‑1 (MQ=255) ccAATAAATGCATTATAAAAATCGAATATACGATGCGGCATAGGAACAATGAAATCAGGGTGCGTCACAACATG‑TGTGACTAAAATCACTc > 1:1690357/1‑91 (MQ=255) cAATAAATGCATTATAAAAATCGAATATACGATGCGGCATAGGAACAATGAAATCAGGGTGCGTCACAACATG‑TGTGACTAAAATCACTCg < 2:2015741/91‑1 (MQ=255) cAATAAATGCATTATAAAAATCGAATATACGATGCGGCATAGGAACAATGAAATCAGGGTGCGTCACAACATG‑TGTGACTAAAATCACTCg < 1:439584/91‑1 (MQ=255) cAATAAATGCATTATAAAAATCGAATATACGATGCGGCATAGGAACAATGAAATCAGGGTGCGTCACAACATG‑TGTGACTAAAATCACTCg > 2:1557313/1‑91 (MQ=255) tAAATGCATTATAAAAATCGAATATACGATGCGGCATAGGAACAATGAAATCAGGGTGCGTCACAACATG‑TGTGACTAAAATCACTCGTCt < 2:1703851/91‑1 (MQ=255) aTGCATTATAAAAATCGAATATACGATGCGGCATAGGAACAATGAAATCAGGGTGCGTCACAACATG‑TGTGACTAAAATCACTCGTCTAtt < 1:3252597/91‑1 (MQ=255) aTGCATTATAAAAATCGAATATACGATGCGGCATAGGAACAATGAAATCAGGGTGCGTCACAACATG‑TGTGACTAAAATCACTCGTCTAtt < 1:1619461/91‑1 (MQ=255) tGCATTATAAAAATCGAATATACGATGCGGCATAGGAACAATGAAATCAGGGTGCGTCACAACATG‑TGTGACTAAAATCACTCGTCTAttt > 1:2509434/1‑91 (MQ=255) tGCATTATAAAAATCGAATATACGATGCGGCATAGGAACAATGAAATCAGGGTGCGTCACAACATG‑TGTGACTAAAATCACTCGTCTAttt < 2:2832083/91‑1 (MQ=255) gCATTATAAAAATCGAATATACGATGCGGCATAGGAACAATGAAATCAGGGTGCGTCACAACATG‑TGTGACTAAAATCACTCGTCTATTTc > 1:3726638/1‑91 (MQ=255) cATTATAAAAATCGAATATACGATGCGGCATAGGAACAATGAAATCAGGGTGCGTCACAACATG‑TGTGACTAAAATCACTCGTCTATTTcc > 2:2969865/1‑91 (MQ=255) aTTATAAGAAGCGAATATACGATGCGGCATAGGAACAATGAAATCAGGGTGCGTCACAACATG‑TGTGACTAAAATCACTCGTCTATTTCCt < 2:711303/91‑1 (MQ=255) tataAAAATCGAATATACGATGCGGCATAGGAACAATGAAATCAGGGTGCGTCACAACATG‑TGTGACTAAAATCACTCGTCTATTTCCTAc > 2:3613769/1‑91 (MQ=255) taAAAATCGAATATACGATGCGGCATAGGAACAATGAAATCAGGGTGCGTCACAACATG‑TGTGACTAAAATCACTCGTCTATTTCCTACtt > 2:3551604/1‑91 (MQ=255) aaaaaTCGAATATACGATGCGGCATAGGAACAATGAAATCAGGGTGCGTCACAACATG‑TGTGACTAAAATCACTCGTCTATTTCCTACTTc > 2:2045615/1‑91 (MQ=255) aaaaaTCGAATATACGATGCGGCATAGGAACAATGAAATCAGGGTGCGTCACAACATG‑TGTGACTAAAATCACTCGTCTATTTCCTACTTc > 1:1186603/1‑91 (MQ=255) aaaaaTCGAATATACGATGCGGCATAGCAACAATGAAATCAGGGTGCGTCACAACATG‑TGTGACTAAAATCACTCGTCTATTTCCTACTTc > 2:84416/1‑91 (MQ=255) aaaaTCGAATATACGATGCGGCATAGGAACAATGAAATCAGGGTGCGTCACAACATG‑TGTGACTAAAATCACTCGTCTATTTCCTACTTCt > 2:1898777/1‑91 (MQ=255) aaTCGAATATACGATGCGGCATAGGAACAATGAAATCAGGGTGCGTCACAACATG‑TGTGACTAAAATCACTCGTCTATTTCCTACTTCTaa < 2:1440678/91‑1 (MQ=255) aaTCGAATATACGATGCGGCATAGGAACAATGAAATCAGGGTGCGTCACAACATG‑TGTGACTAAAATCACTCGTCTATTTCATACTTCTaa > 1:3777270/1‑91 (MQ=255) aTCGAATATACGATGCGGCATAGGAACAATGAAATCAGGGTGCGTCACAACATG‑TGTGACTAAAATCACTCGTCTATTTCCTACTTCTAat > 2:409906/1‑91 (MQ=255) gAATATACGATGCGGCATAGGAACAATGAAATCTGGGTGCGTCACAACATG‑TGTGACTAAAATCACTCGTCTATTTCCTACTTCTAatata < 1:3235403/91‑1 (MQ=255) aaTATACGATGCGGCATAGGAACAATGAAATCAGGGTGCGTCACAACATG‑TGTGACTAAAATCACTCGTCTATTTCCTACTTCTAatatat > 1:2064537/1‑91 (MQ=255) atatACGATGCGGCATAGGAACAATGAAATCAGGGTGCGTCACAACATG‑TGTGACTAAAATCACTCGTCTATTTCCTACTTCTAATATAtc > 1:3446398/1‑91 (MQ=255) atatACGATGCGGCATAGGAACAATGAAATCAGGGTGCGTCACAACATG‑TGTGACTAAAATCACTCGTCTATTTCCTACTTCTAATATAtc < 2:1098419/91‑1 (MQ=255) tataCGATGCGGCATAGGAACAATGAAATCAGGGTGCGTCACAACATG‑TGTGACTAAAATCACTCGTCTATTTCCTACTTCTAATATAtct > 2:3137231/1‑91 (MQ=255) ataCGATGCGGCATAGGAACAATGAAATCAGGGTGCGTCACAACATG‑TGTGACTAAAATCACTCGTCTATTTCCTACTTCTAATATAtctt < 2:103270/91‑1 (MQ=255) taCGATGCGGCATAGGAACAATGAAATCAGGGTGCGTCACAACATG‑TGTGACTAAAATCACTCGTCTATTTCCTACTTCTAATATAtcttt > 2:2990379/1‑91 (MQ=255) cGATGCGGCATAGGAACAATGAAATCAGGGTGCGTCACAACGTG‑TGTGACTAAAATCACTCGTCTATTTCCTACTTCTAATATAtctttct < 2:3472937/91‑1 (MQ=255) gATGCGGCATAGGAACAATGAAATCAGGGTGCGTCACAACATG‑TGTGACTAAAATCACTCGTCTATTTCCTACTTCTAATATAtctttctt > 1:1077627/1‑91 (MQ=255) aTGCGGCATAGGAACAATGAAATCAGGGTGCGTCACAACATG‑TGTGACTAAAATCACTCGTCTATTTCCTACTTCTAATATATCTttcttc < 2:1797957/91‑1 (MQ=255) tGCGGCATAGGAACAATGAAATCAGGGTGCGTCACAACATG‑TGTGACTAAAATCACTCGTCTATTTCCTACTTCTAATATATCTTTCTTCa < 1:2620402/91‑1 (MQ=255) tGCCGCATAGGAACAATGAAATCAGAGTGCGTCACAACATC‑TGTGACTAAAATCACTCCTCTGTTTCCTACTTCTAATATATCTTTCTTCa < 2:642400/91‑1 (MQ=255) gCATAGGAACAATGAAATCAGGGTGCGTCACAACATG‑TGTGACTAAAATCACTCGTCTATTTCCTACTTCTAATATATCTTTCTTCACTTg < 1:3833368/91‑1 (MQ=255) cATAGGAACAATGAAATCAGGGTGCGTCACAACATG‑TGTGACTAAAATCACTCGTCTATTTCCTACTTCTAATATATCTTTCTTCACTTGt > 1:1126957/1‑91 (MQ=255) cATAGGAACAATGAAATCAGGGTGCGTCACAACATG‑TGTGACTAAAATCACTCGTCTATTTCCTACTTCTAATATATCTTTCTTCACTTGt > 1:309056/1‑91 (MQ=255) aTAGGAACAATGAAATCAGGGTGCGTCACAACATG‑TGTGACTAAAATCACTCGTCTATTTCCTACTTCTAATATATCTTTCTTCACTTGtt < 2:196634/91‑1 (MQ=255) tAGGAACAATGAAATCAGGGTGCGTCACAACATG‑TGTGACTAAAATCACTCGTCTATTTCCTACTTCTAATATATCTTTCTTCACTTGTTc > 2:889933/1‑91 (MQ=255) agtaaCAATGAAATCAGGGTGCGTCACAACATG‑TGTGACTAAAATCACTCGTCTATTTCCTACTTCTAATATATCTTTCTTCACTTGTTCa < 2:2885127/88‑1 (MQ=255) aGGAACAATGAAATCAGGGTGCGTCACAACATG‑TGTGACTAAAATCACTCGTCTATTTCCTACTTCTAATATATCTTTCTTCACTTGTTCa > 2:2048660/1‑91 (MQ=255) ggAACAATGAAATCAGGGTGCGTCACAACATG‑TGTGACTAAAATCACTCGTCTATTTCCTACTTCTAATATATCTTTCTTCACTTGTTCAg < 2:78788/91‑1 (MQ=255) ggAACAATGAAATCAGGGTGCGTCACAACATG‑TGTGACTAAAATCACTCGTCTATTTCCTACTTCTAATATATCTTTCTTCACTTGTTCAg < 1:339167/91‑1 (MQ=255) gAACAATGAAATCAGGGTGCGTCACAACATG‑TGTGACTAAAATCACTCGTCTATTTCCTACTTCTAATATATCTTTCTTCACTTGTTCAGc < 1:922811/91‑1 (MQ=255) aaCAATGAAATCAGGGTGCGTCACAACATG‑TGTGACTAAAATCACTCGTCTATTTCCTACTTCTAATATATCTTTCTTCACTTGTTCAGcc < 2:1200134/91‑1 (MQ=255) aaCAATGAAATCAGGGTGCGTCACAACATG‑TGTGACTAAAATCACTCGTCTATTTCCTACTTCTAATATATCTTTCTTCACTTGTTCAGcc < 2:2658377/91‑1 (MQ=255) aaCAATGAAATCAGGGTGCGTCACAACATG‑TGTGACTAAAATCACTCGTCTATTTCCTACTTCTAATATATCTTTCTTCACTTGTTCAGcc < 1:215807/91‑1 (MQ=255) gAAATCAGGGTGCGTCACAACATG‑TGTGACTAAAATCACTCGTCTATTTCCTACTTCTAATATATCTTTCTTCACTTGTTCAGCCGCTAtt > 2:1378169/1‑91 (MQ=255) aaTCAGGGTGCGTCACAACATG‑TGTGACTAAAATCACTCGTCTATTTCCTACTTCTAATATATCTTTCTTCACTTGTTCAGCCGCTAtttt > 2:488631/1‑91 (MQ=255) aTCAGGGTGCGTCACAACATG‑TGTGACTAAAATCACTCGTCTATTTCCTACTTCTAATATATCTTTCTTCACTTGTTCAGCCGCTATTTTa > 1:183729/1‑91 (MQ=255) tCAGGGTGCGTCACAACATG‑TGTGACTAAAATCACTCGTCTATTTCCTACTTCTAATATATCTTTCTTCACTTGTTCAGCCGCTATTTTAg > 1:1583490/1‑91 (MQ=255) tCAGGGTGCGTCACAACATG‑TGTGACTAAAATCACTCGTCTATTTCCTACTTCTAATATATCTTTCTTCACTTGTTCAGCCGCTATCTTAg < 1:3127968/91‑1 (MQ=255) cAGGGTGCGTCACAACATG‑TGTGACTAAAATCACTCGTCTATTTCCTACTTCTAATATATCTTTCTTCACTTGTTCAGCCGCTATTTTAGa < 1:1849824/91‑1 (MQ=255) cAGGGTGCGTCACAACATG‑TGTGACTAAAATCACTCGTCTATTTCCTACTTCTAATATATCTTTCTTCACTTGTTCAGCCGCTATTTTAGa < 1:1189791/91‑1 (MQ=255) cAGGGTGCGTCACAACATG‑TGTGACTAAAATCACTCGTCTATTTCCTACTTCTAATATATCTTTCTTCACTTGTTCAGCCGCTATTTTAGa < 1:2711165/91‑1 (MQ=255) cAGGGTGCGTCACAACATG‑TGTGACTAAAATCACTCGTCTATTTCCTACTTCTAATAGATCTTTCTTCACTTGTTCAGCCGCTATTTTAGa > 2:2131740/1‑91 (MQ=255) gggTGCGTCACAACATG‑TGTGACTAAAATCACTCGTCTATTTCCTACTTCTAATATATCTTTCTTCACTTGTTCAGCCGCTATTTTAGATa > 2:3339923/1‑91 (MQ=255) gggTGCGTCACAACATG‑TGTGACTAAAATCACTCGTCTATTTCCTACTTCTAATATATCTTTCTTCACTTGTTCAGCCGCTATTTTAGATa < 1:3395205/91‑1 (MQ=255) ggTGCGTCACAACATG‑TGTGACTAAAATCACTCGTCTATTTCCTACTTCTAATATATCTTTCTTCACTTGTTCAGCCGCTATTTTAGATaa > 1:1423739/1‑91 (MQ=255) tttagTCAC‑ACATGTTGTGACTAAAATCACTCGTCTATTTCCTACTTCTAATATATCTTTCTTCACCTGTTCAGCCGCTATTTCAGATaaa > 2:3847176/5‑91 (MQ=255) gTGCGTCACAACATG‑TGTGACTAAAATCACTCGTCTATTTCCTACTTCTAATATATCTTTCTTCACTTGTTCAGCCGCTATTTTAGATaaa < 1:719927/91‑1 (MQ=255) gTGCGTCACAACATG‑TGTGACTAAAATCACTCGTCTATTTCCTACTTCTAATATATCTTTCTTCACTTGTTCAGCCGCTATTTTAGATaaa < 1:887165/91‑1 (MQ=255) gTGCGTCACAACATG‑TGTGACTAAAATCACTCGTCTATTTCCTACTTCTAATATATCTTTCTTCACTTGTTCAGCCGCTATTTTAGATaaa < 2:892020/91‑1 (MQ=255) tagTCAC‑ACATGTTGTGACTAAAATCACTCGTCTATTTCCTACTTCTAATATATCTTTCTTCACTTGTTCAGCCGCTATTTTAGATAAAtt > 1:2000792/3‑91 (MQ=255) gCGTCACAACATG‑TGTGACTAAAATCACTCGTCTATTTCCTACTTCTAATATATCTTTCTTCACTTGTTCAGCCGCTATTTTAGATAAAtt > 1:1812474/1‑91 (MQ=255) gCGTCACAACATG‑TGTGACTAAAATCACTCGTCTATTTCCTACTTCTAATATATCTTTCTTCACTTGTTCAGCCGCTATTTTAGATAAAtt < 1:1316401/91‑1 (MQ=255) cGTCACAACATG‑TGTGACTAAAATCACTCGTCTATTTCCTACTTCTAATATATCTTTCTTCACTTGTTCAGCCGCTATTTTAGATAAAttt > 1:622505/1‑91 (MQ=255) cGTCACAACATG‑TGTGACTAAAATCACTCGTCTATTTCCTACTTCTAATATATCTTTCTTCACTTGTTCAGCCGCTATTTTAGATAAAttt < 2:2930974/91‑1 (MQ=255) gTCACAACATG‑TGTGACTAAAATCACTCGTCTATTTCCTACTTCTAATATATCTTTCTTCACTTGTTCAGCCGCTATTTTAGATAAAtttt > 1:2920559/1‑91 (MQ=255) gTCACAACATG‑TGTGACTAAAATCACTCGTCTATTTCCTACTTCTAATATATCTTTCTTCACTTGTTCAGCCGCTATTTTAGAGAAAtttt > 1:1955519/1‑91 (MQ=255) caacaTG‑TGTGACTAAAATCACTCGTCTATTTCCTACTTCTAATATATCTTTCTTCACTTGTTCAGCCGCTATTTTAGATAAATTTTGATc < 1:659999/91‑1 (MQ=255) | AAAGGATTGAAATCACTTGTCCCAATAAATGCATTATAAAAATCGAATATACGATGCGGCATAGGAACAATGAAATCAGGGTGCGTCACAACATG‑TGTGACTAAAATCACTCGTCTATTTCCTACTTCTAATATATCTTTCTTCACTTGTTCAGCCGCTATTTTAGATAAATTTTGATCT > USA300TCH1516_ALE/2561406‑2561585 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |