| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 1,421,610:1 | +A | 8.3% | intergenic (+46/+94) | pepF1_2 → / ← phoU | Oligoendopeptidase F, plasmid/Phosphate‑specific transport system accessory protein PhoU |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 1,421,610 | 1 | . | A | 8.3% | 963.3 / 78.5 | 240 | intergenic (+46/+94) | pepF1_2/phoU | Oligoendopeptidase F, plasmid/Phosphate‑specific transport system accessory protein PhoU |
| Reads supporting (aligned to +/- strand): ref base . (117/103); new base A (15/5); total (132/108) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.51e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 258 total aligned reads displayed.
AAGTTGAAAAATTAACAGATGAAATTGAGCAAGCAAATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTTATAGTAATAACTTT > USA300TCH1516_ALE/1421521‑1421700 | aaGTTGAAAAATTAACAGATGAAATTGAGCAAGCAAATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTcac‑a < 1:1040380/91‑1 (MQ=255) aGTTGAAAAATTAACAGATGAAATTGAGCAAGCAAATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑At > 2:1597515/1‑91 (MQ=255) gTTGAAAAATTAACAGATGAAATTGAGCAAGCAAATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑Att > 1:1620390/1‑91 (MQ=255) gTTGAAAAATTAACAGATGAAATTGAGCAAGCAAATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑Att > 1:3815762/1‑91 (MQ=255) tGAAAAATTAACAGATGAAATTGAGCAAGCAAATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTAc < 1:3266967/91‑1 (MQ=255) tGAAAAATTAACAGATGAAATTGAGCAAGCAAATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTAc > 2:3863574/1‑91 (MQ=255) gAAAAATTAACAGATGAAATTGAGCAAGCAAATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACt > 2:1573633/1‑91 (MQ=255) gAAAAATTAACAGATGAAATTGAGCAAGCAAATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACt > 1:1461984/1‑91 (MQ=255) gAAAAATTAACAGATGAAATTGAGCAAGCAAATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACt < 1:3607936/91‑1 (MQ=255) aaaaaTTAAGAGATGAGATTGAGCAAGCAAAGAGCGAAGAGGAGAGACAATTTATAGTAGAACAAGATAAACCAAGATTTTCAC‑ATTACTa < 2:3273185/91‑1 (MQ=255) aaaaTTAACAGATGAAATTGAGCAAGCAAATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTaa > 2:3594511/1‑91 (MQ=255) aaTTAACAGATGAAATTGAGCAAGCAAATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAAtt < 2:2372484/91‑1 (MQ=255) aaTTAACAGATGAAATTGAGCAAGCAAATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAAtt < 1:459555/91‑1 (MQ=255) ttAACAGATGAAATTGAGCAAGCAAATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATtgt < 2:2874761/91‑1 (MQ=255) ttAACAGATGAAATTGAGCAAGCAAATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATtgt > 2:2496608/1‑91 (MQ=255) tAACAGATGAAATTGAGCAAGCAAATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATtgtg > 2:3454342/1‑91 (MQ=255) tAACAGATGAAATTGAGCAAGCAAATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATtgtg < 1:1485731/91‑1 (MQ=255) tAACAGATGAAATTGAGCAAGCAAATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTCTCACAATTAGTAAtgtg < 2:311077/91‑4 (MQ=37) aCAGATGAAATTGAGCAAGCAAATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTgag > 2:2474950/1‑91 (MQ=255) aCAGATGAAATTGAGCAAGCAAATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTgag > 1:3640930/1‑91 (MQ=255) aCAGATGAAATTGAGCAAGCAAATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTgag > 2:2016187/1‑91 (MQ=255) aCAGATGAAATTGAGCAAGCAAATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTgag > 2:1339456/1‑91 (MQ=255) aCAGATGAAATTGAGCAAGCAAATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTgag > 2:650010/1‑91 (MQ=255) aGATGAAATTGAGCAAGCAAATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCCC‑ATTACTAATTGTGAGaa > 2:2783442/1‑91 (MQ=255) aGATGAAATTGAGCAAGCAAATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGaa > 2:190714/1‑91 (MQ=255) aTGAAATTGAGCAAGCAAATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATc < 2:2545167/91‑1 (MQ=255) tGAAATTGAGCAAGCAAATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCt < 1:2117145/91‑1 (MQ=255) tGAAATTGAGCAAGCAAATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTCTCACAATTAGTAA‑TGTGAAAATCt < 2:644094/91‑1 (MQ=21) aaTTGAGCAAGCAAATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTgg < 2:1757071/91‑1 (MQ=255) aTTGAGCAAGCAAATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGt < 2:3381195/91‑1 (MQ=255) ttGAGCAAGCAAATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTCTCACAATTAGTAA‑TGTGAAAATCTTGGtt < 1:3223794/91‑1 (MQ=21) tGAGCAAGCAAATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGCATCTTGGttt > 2:2178888/1‑91 (MQ=255) tGAGCAAGCAAATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGttt > 2:3463679/1‑91 (MQ=255) gAGCAAGCAAATAACTAAGATGCGAGACAAGTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGtttt < 1:2802995/91‑1 (MQ=255) caagcaaATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGttttttt < 2:488742/91‑1 (MQ=255) aagcaaATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTg < 2:1857342/91‑1 (MQ=255) aTAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGtt < 2:2086903/91‑1 (MQ=255) tAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGttt < 2:3933107/91‑1 (MQ=255) tAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGttt > 1:1751573/1‑91 (MQ=255) aaCTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTa < 2:2426724/91‑1 (MQ=255) aCTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTAt < 1:192735/91‑1 (MQ=255) cTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGTGTTTATg > 2:1362820/1‑91 (MQ=255) tAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGa > 1:811382/1‑91 (MQ=255) tAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGa > 1:670385/1‑91 (MQ=255) tAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGa > 2:699608/1‑91 (MQ=255) tAAGATGCGAGACAACTTATAGTAGAACAATCTAAACCAAGTTTTTCAC‑ATTACTAATTGTGAGAATCATGGTTTTTTTGAGGGTTTATGa > 2:3009068/1‑91 (MQ=255) aGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGaat < 1:1580552/91‑1 (MQ=255) aGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGaat < 2:1276230/91‑1 (MQ=255) aGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGaat < 1:3002787/91‑1 (MQ=255) aGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGaat < 1:2882028/91‑1 (MQ=255) aTGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGaataa < 1:673997/91‑1 (MQ=255) aTGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGaataa < 1:3774040/91‑1 (MQ=255) gagaCAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGa > 2:2652518/1‑91 (MQ=255) agaCAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGaa > 1:2154306/1‑91 (MQ=255) agaCAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGaa < 2:136560/91‑1 (MQ=255) agaCAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGaa > 1:2576916/1‑91 (MQ=255) aaTTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAatat < 1:2252011/91‑1 (MQ=255) aTTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAatata > 1:1328877/1‑91 (MQ=255) tttATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAatatat > 1:539964/1‑91 (MQ=255) tataGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTACGAATAATAGAAatatatat > 2:109623/1‑91 (MQ=255) ataGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATAtt > 2:2673720/1‑91 (MQ=255) tagtagAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATAttt > 1:3928823/1‑91 (MQ=255) agAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCg > 2:1033660/1‑91 (MQ=255) gAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGt < 1:3709743/91‑1 (MQ=255) aaCAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTa < 1:354487/91‑1 (MQ=255) aCAATATAAACCAATATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTaa < 2:2128450/91‑1 (MQ=255) aCAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTaa < 1:2957199/91‑1 (MQ=255) aaTATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAgg < 1:1709035/91‑1 (MQ=255) aaTATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAgg < 2:3592974/91‑1 (MQ=255) ataAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGAt > 2:901977/1‑91 (MQ=255) ataAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGAt < 1:1068753/91‑1 (MQ=255) aaaCCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGAttt > 2:732346/1‑91 (MQ=255) aaaCCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGAttt < 2:3738257/91‑1 (MQ=255) aaCCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGAtttt > 2:1781863/1‑91 (MQ=255) aaCCAAGATTCTCACAATTAGTAA‑TGTGAAAATCTTGG‑TTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTta > 1:1002238/1‑91 (MQ=18) aCCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTta > 2:3136506/1‑91 (MQ=255) aCCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTta < 2:1661632/91‑1 (MQ=255) aCCAAGATTCTCACAATTAGTAA‑TGTGAAAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTta > 1:3440359/1‑91 (MQ=21) ccAAGATTCTCACAATTAGTAA‑TGTGAAAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTtat > 1:2913691/1‑91 (MQ=21) ccAAGATTCTCACAATTAGTAA‑TGTGAAAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTtat > 1:2513427/1‑91 (MQ=21) aGATTCTCACAATTAGTAA‑TGTGAAAATCTTGGTTTTTTTGCGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTTATAGt > 2:3003398/1‑91 (MQ=21) aTTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTTATAGtaa < 1:1111600/91‑1 (MQ=255) aTTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTTATAGtaa < 1:2390139/91‑1 (MQ=255) aTTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTTATAGtaa < 1:1847301/91‑1 (MQ=255) aTTCTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTTATAGtaa < 1:3191232/91‑1 (MQ=255) ttttCAC‑GTTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTTATAGtaat < 2:3510106/91‑1 (MQ=255) ttttCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTTATAGtaat > 1:3400667/1‑91 (MQ=255) ttttCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTTATAGtaat < 1:1515054/91‑1 (MQ=255) ttttCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTTATAGtaat > 1:3400636/1‑91 (MQ=255) tttCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTTATAGtaata > 2:375319/1‑91 (MQ=255) ttCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTTATAGtaataa > 2:3395781/1‑91 (MQ=255) ttCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTTATAGtaataa > 1:1281474/1‑91 (MQ=255) tCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTTATAGTAATAAc < 1:650010/91‑1 (MQ=255) cac‑aTTACTAATTGTGAGAATCTTGGTTTTTTTTATTTTTTATGAATAATAGAAATATACATTTATCGTAAGGGATTTTATAGTAATAACt > 2:2822803/1‑91 (MQ=255) cac‑aTTACTAATTGTGAGAATCTTGGTTTTTTTGTGGGTTTATGAATAATGGAAATATATATTTATCGTAAGGGATTTTATAGTAATAACt < 2:22218/91‑1 (MQ=255) cac‑aTTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTTATAGTAATAACt > 1:217503/1‑91 (MQ=255) ac‑aTTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTTATAGTAATAACtt > 1:2344572/1‑91 (MQ=255) ac‑aTTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTTATAGTAATAACtt > 1:1530486/1‑91 (MQ=255) ac‑aTTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTTATAGTAATAACtt > 1:1251581/1‑91 (MQ=255) ac‑aTTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTTATAGTAATAACtt < 1:694893/91‑1 (MQ=255) | AAGTTGAAAAATTAACAGATGAAATTGAGCAAGCAAATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTTATAGTAATAACTTT > USA300TCH1516_ALE/1421521‑1421700 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |