| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 2,211,678:1 | +G | 8.3% | intergenic (+671/+142) | USA300HOU_RS11275 → / ← yidC | hypothetical protein/Membrane protein insertase YidC |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 2,211,678 | 1 | . | G | 8.3% | 767.1 / 64.8 | 181 | intergenic (+671/+142) | USA300HOU_RS11275/yidC | hypothetical protein/Membrane protein insertase YidC |
| Reads supporting (aligned to +/- strand): ref base . (89/77); new base G (9/6); total (98/83) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.88e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 197 total aligned reads displayed.
CAACTCTGTTATTAACCACTTTTTACATACTGAAAACTCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGAAGCGAAAAATAATGTGCGCCCTATAAA > USA300TCH1516_ALE/2211588‑2211768 | cAACTCTGTTATTAACCACTTTTTACATACTGAAAACTCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGaaa > 1:3491760/1‑91 (MQ=255)cAACTCTGTTATTAACCACTTTTTACATACTGAAAACTCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGaaa > 1:3491773/1‑91 (MQ=255) ctctGTTTTTATCCACTTTTTACATACTGAAAACGCGTTAATATTATGTCATATAGAAACAGCAGTAAGATGA‑TTTCAAATGTGaaagtca < 2:1000027/91‑5 (MQ=12) ctctGTTATTAACCACTTTTTACATACTGAAAACTCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAa‑tca > 2:531041/1‑91 (MQ=255) ctctGTTATTAACCACTTTTTACATACTGAAAACTCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAa‑tca > 2:1519977/1‑91 (MQ=255) ctctGTTATTAACCACTTTTTACATACTGAAAACTCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAa‑tca > 2:2112277/1‑91 (MQ=255) ttattaACCACTTTTTACATACTGAAAACTCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTa > 1:230159/1‑91 (MQ=255) taACCACTTTTTACATACTGAAAACTCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTActgc < 2:1429446/91‑1 (MQ=255) taACCACTTTTTACATACTGAAAACTCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTActgc < 2:2781689/91‑1 (MQ=255) taACCACTTTTTACATACTGAAAACTCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTActgc > 1:3886122/1‑91 (MQ=255) taACCACTTTTTACATACTGAAAACTCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTActgc < 1:3910473/91‑1 (MQ=255) taACCACTTTTTACATACTGAAAACTCGTTAATATTATTTCAAATAAAAACAGCAGTAAGATGA‑TTTCAAATGTGAAAGTCATCCTActgc < 1:3071617/91‑1 (MQ=17) aaCCACTTTTTACATACTGAAATCTCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTActgct < 2:2084770/91‑1 (MQ=255) aaCCACTTTTTACATACTGAAAACTCGTTAATATTATTTCAAATAAAAACAGCAGTAAGATGA‑TTTCAAATGTGAAAGTCATCCTActgct < 2:2357051/91‑1 (MQ=17) aCCACTTTTTACATACTGAAAACTCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTActgctg < 2:3758978/91‑1 (MQ=255) ccACTTTTTACATACTGAAAACTCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGt > 2:1211834/1‑91 (MQ=255) cACTTTTTACATACTGAAAACTCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGtt < 2:683022/91‑1 (MQ=255) cACTTTTTACATACTGAAAACTCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGtt < 1:1727057/91‑1 (MQ=255) aCTTTTTACATACTGAAAACTCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGttt < 1:337939/91‑1 (MQ=255) cTTTTTACATACTGAAAACTCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGttta < 2:501737/91‑2 (MQ=255) cTTTTTACATACTGAAAACTCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTc < 2:1189645/91‑1 (MQ=255) cTTTTTACATACTGAAAACTCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTc < 1:985375/91‑1 (MQ=255) cTTTTTACATACTGAAAACTCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTc > 2:1998699/1‑91 (MQ=255) cTTTTTACATACTGAAAACTCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTc < 1:316110/91‑1 (MQ=255) ttACATACTGAAAACTCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTAtt > 2:1680168/1‑91 (MQ=255) ttACATACTGAAAACTCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTAtt > 2:1858365/1‑91 (MQ=255) tACATACTGAAAACTCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTAttt > 2:1845697/1‑91 (MQ=255) aCATACTGAAAACTCGTTAATATTATTTCAGATAAAAGCAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTa < 2:955454/91‑1 (MQ=255) aCATACTGAAAACTCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTa < 1:2166019/91‑1 (MQ=255) aTACTGAAAACTCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATc < 2:708263/91‑1 (MQ=255) aTACTGAAAACTCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATc < 2:2406724/91‑1 (MQ=255) tACTGAAAACTCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATCTGAAA‑TCATCTTACTGCTGTTTCTATTTATca > 1:3364436/1‑91 (MQ=255) gAAAACTCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACata > 2:2501469/1‑91 (MQ=255) aaCTCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGGCTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATATATCACATATTg < 2:3462046/91‑1 (MQ=255) aaCTCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTg < 2:2730562/91‑1 (MQ=255) aCTCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGt < 1:544812/91‑1 (MQ=255) aCTCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGt < 1:2543543/91‑1 (MQ=255) aCTCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGt < 1:370999/91‑1 (MQ=255) aCTCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGt < 2:2588995/91‑1 (MQ=255) cTCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGta < 1:1604078/91‑1 (MQ=255) gTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATaa > 2:146981/1‑91 (MQ=255) gTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATaa > 2:2270791/1‑91 (MQ=255) gTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATaa < 2:3273732/91‑1 (MQ=255) gTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATaa > 2:3490508/1‑91 (MQ=255) ttAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAAt > 2:310355/1‑91 (MQ=255) ttAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAAt > 1:1866684/1‑91 (MQ=255) ttAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAAt > 2:3310597/1‑91 (MQ=255) aaTATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAAtgt < 2:2831971/91‑1 (MQ=255) aaTATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAAtgt < 2:864767/91‑1 (MQ=255) atatTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAAtgtg > 2:2339129/1‑91 (MQ=255) tattatTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGa < 2:2533985/91‑1 (MQ=255) ttattTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGaca > 1:74612/1‑91 (MQ=255) attTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACt > 1:3580974/1‑91 (MQ=255) tttCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTa < 2:3922191/91‑1 (MQ=255) ttCAGATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTaa < 2:2689392/91‑1 (MQ=255) ttCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTaa < 1:1597155/91‑1 (MQ=255) cAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGt < 2:1754574/91‑1 (MQ=255) cAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGt > 1:568899/1‑91 (MQ=255) aaaTAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGtt > 2:127028/1‑91 (MQ=255) aaTAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGttt > 2:802669/1‑91 (MQ=255) aaTAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGttt > 2:1179118/1‑91 (MQ=255) aaTAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGttt < 2:60826/91‑1 (MQ=255) aaaaaCAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGc > 1:2245449/1‑91 (MQ=255) aaaaCAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCt > 1:73374/1‑91 (MQ=255) aaaCAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTa > 1:2633553/1‑91 (MQ=255) aCAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTAtt > 1:2416307/1‑91 (MQ=255) aCAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTAtt > 1:3216965/1‑91 (MQ=255) cagcagTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCttcaa < 1:1136824/91‑5 (MQ=255) cagcagTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTg > 1:283664/1‑91 (MQ=255) agcagTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGa > 1:2074786/1‑91 (MQ=255) agcagTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGa > 1:1849712/1‑91 (MQ=255) agcagTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGa > 1:3109753/1‑91 (MQ=255) gcagTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGaa > 1:2892630/1‑91 (MQ=255) gcagTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGaa < 2:1613635/91‑1 (MQ=255) gcagTAAGATGA‑TTTCAAATGTGAAAGTCATCCTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGaa > 1:1712336/1‑91 (MQ=17) cagTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGAAg > 2:2149931/1‑91 (MQ=255) cagTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGAAg > 1:1237846/1‑91 (MQ=255) agTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGAAGc < 1:1040281/91‑1 (MQ=255) agTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGAAGc > 1:3006682/1‑91 (MQ=255) agTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGAAGc > 2:1889431/1‑91 (MQ=255) gTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGAAGCg < 1:3572804/91‑1 (MQ=255) tAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGAAGCGa > 2:2928951/1‑91 (MQ=255) aTGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGAAGCGaaaaa > 1:104672/1‑91 (MQ=255) tGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTAATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGAAGCGAAAaat < 1:931672/91‑1 (MQ=255) gACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGAAGCGAAAaata > 1:1351728/1‑91 (MQ=255) ttCACATTGGGAA‑TCATCGTACTGCTGTTTCTATTTATCACATATTCTATAATGTGACACTAAGTTTCGCTATTGAAGCGAAAAATAAtgt < 1:1305044/91‑1 (MQ=255) tCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACAGTAAGTTTCGCTATTGAAGCGAAAAATAAtgtg < 2:3886122/91‑1 (MQ=255) cacaTTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATACTGTGACACTAAGTTTCGCTATTGAAGCGAAAAATAATGTgc < 1:3428194/91‑1 (MQ=255) cacaTTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGAAGCGAAAAATAATGTgc > 1:1909017/1‑91 (MQ=255) acaTTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGAAGCGAAAAATAATGTgcg < 2:3791553/91‑1 (MQ=255) acaTTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGAAGCGAAAAATAATGTgcg > 2:165089/1‑91 (MQ=255) caTTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGAAGCGAAAAATAATGTgcgc > 1:1248007/1‑91 (MQ=255) caTTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGAAGCGAAAAATAATGTgcgc < 1:3837903/91‑1 (MQ=255) caTTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGAAGCGAAAAATAATGTgcgc > 2:2462225/1‑91 (MQ=255) ttGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGAAGCGAAAAATAATGTGCGCCCt > 2:1672935/1‑91 (MQ=255) tGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGAAGCGAAAAATAATGTGCGCCCta > 1:1689881/1‑91 (MQ=255) aaa‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGAAGCGAAAAATAATGTGCGCCCtata < 2:112801/91‑1 (MQ=255) aa‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGAAGCGAAAAATAATGTGCGCCCTATaa > 2:2710635/1‑91 (MQ=255) aa‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGAAGCGAAAAATAATGTGCGCCCTATaa > 2:1445814/1‑91 (MQ=255) a‑tcatcTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGAAGCGAAAAATAATGTGCGCCCTATaaa > 1:348867/1‑91 (MQ=255) | CAACTCTGTTATTAACCACTTTTTACATACTGAAAACTCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGAAGCGAAAAATAATGTGCGCCCTATAAA > USA300TCH1516_ALE/2211588‑2211768 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |