| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 2,430,691:1 | +A | 8.2% | intergenic (‑115/‑270) | suhB_2 ← / → birA_2 | Inositol‑1‑monophosphatase/Bifunctional ligase/repressor BirA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 2,430,691 | 1 | . | A | 8.2% | 837.5 / 70.5 | 219 | intergenic (‑115/‑270) | suhB_2/birA_2 | Inositol‑1‑monophosphatase/Bifunctional ligase/repressor BirA |
| Reads supporting (aligned to +/- strand): ref base . (86/115); new base A (7/11); total (93/126) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.08e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 242 total aligned reads displayed.
TTATCATTTTATTATTACCCTATATTAAAAGAATCAACAATACAACTGAAGACTTCTTCATTTTATGCATAAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTAACTTGAACGATTAAAAGCTATCTGTTATATAGCT > USA300TCH1516_ALE/2430600‑2430781 | ttatcattTTATTATTACCCTATATTAAAAGAATCAACAATACAACTGAAGACTTCTTCATTTTATGCATAAAAAAATCGGCTAG‑CACGTg < 1:1292835/91‑1 (MQ=255) tatcattTTATTATTACCCTATATTAAAAGATTCAACAATATAACTGAAGACTTCTTCATTTTATGCATAAAAAAATCGGCTAG‑CACGTga < 2:3480229/91‑2 (MQ=255) tatcattTTATTATTACCCTATATTAAAAGAATCAACAATACAACTGAAGACTTCTTCATTTTATGCATAAAAAAATCGGCTAGTCACGTg < 1:3506381/91‑1 (MQ=255) tatcattTTATTATTACCCTATATTAAAAGAATCAACAATACAACTGAAGACTTCTTCATTTTATGCATAAAAAAATCGGCTAGTCACGTg < 2:2343757/91‑1 (MQ=255) tcattTTATTATTACCCTATATTAAAAGAATCAACAATACAACTGAAGACTTCTTCATTTTATGCATAAAAAAATCGGCTAG‑CACGTgact < 1:883023/91‑4 (MQ=255) attTTATTATTACCCTATATTAAAAGAATCAACAATACAACTGAAGACTTCTTCATTTTATGCATAAAAAAATCGGCTAGTCACGTG‑CTAg > 2:2510066/1‑91 (MQ=255) attTTATTATTACCCTATATTAAAAGAATCAACAATACAACTGAAGACTTCTTCATTTTATGCAT‑AAAAAATCGGCTAGTCACGTG‑CTAGc > 1:2793939/1‑91 (MQ=255) tttATTATTACCCTATATTAAAAGAATCAACAATACAACTGAAGACTTCTTCATTTTATGCATAAAAAAATCGGCTAG‑CACGTGACTAGcc < 1:1373545/91‑1 (MQ=255) ttattattaCCCTATATTAAAAGAATCAACAATACAACTGAAGACTTCTTCATTTTATGCATAAAAAAATCGGCTAGTCACGTG‑CTAGCCg > 2:423513/1‑91 (MQ=255) ttattattaCCCTATATTAAAAGAATCAACAATACAACTGAAGACTTCTTCATTTTATGCATAAAAAAATCGGCTAG‑CACGTGACTAGCCg < 1:2993706/91‑1 (MQ=255) ttattattaCCCTATATTAAAAGAATCAACAATACAACTGAAGACTTCTTCATTTTATGCATAAAAAAATCGGCTAG‑CACGTGACTAGCCg < 1:2992293/91‑1 (MQ=255) tattattaCCCTATATTAAAAGAATCAACAATACAACTGAAGACTTCTTCATTTTATGCATAAAAAAATCGGCTAGTCACGTG‑CTAGCCGa > 1:3851684/1‑91 (MQ=255) tattattaCCCTATATTAAAAGAATCAACAATACAACTGAAGACTTCTTCATTTTATGCATAAAAAAATCGGCTAG‑CACGTGACTAGCCGa < 1:427403/91‑1 (MQ=255) ttattaCCCTATATTAAAAGAATCAACAATACAACTGAAGACTTCTTCATTTTATGCATAAAAAAATCGGCTAGTCACGTG‑CTAGCCGACa < 1:2393644/91‑1 (MQ=255) cccTATATTAAAAGAATCAACAATACAGCGGAAGACTTCTTCATTTTATGCATAAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAga < 2:1708306/91‑1 (MQ=255) cccTATATTAAAAGAATCAACAATACAACTGAAGACTTCTTCATTTTATGCATAAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAga < 1:1010817/91‑1 (MQ=255) tatTAAAAGAATCAACAATACAACTGAAGACTTCTTCATTTTATGCATAAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAgaaagga < 2:3012771/91‑1 (MQ=255) tatTAAAAGAATCAACAATACAACTGAAGACTTCTTCATTTTATGCATAAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAgaaagga < 2:2273432/91‑1 (MQ=255) atTAAAAGAATCAACAATACAACTGAAGACTTCTTCATTTTATGCATAAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAgaaaggaa > 1:3383993/1‑91 (MQ=255) ttAAAAGAATCAACAATACAACTGAAGACTTCTTCATTTTATGCATAAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAgaaaggaaa < 1:3189368/91‑1 (MQ=255) ttAAAAGAATCAACAATACAACTGAAGACTTCTTCATTTTATGCATAAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAgaaaggaaa > 2:314356/1‑91 (MQ=255) tAAAAGAATCAACAATACAACTGAAGACTTCTTCATTTTATGCATAAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAgaaaggaaag > 2:469764/1‑91 (MQ=255) tAAAAGAATCAACAATACAACTGAAGACTTCTTCATTTTATGCATAAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAgaaaggaaag > 1:1900881/1‑91 (MQ=255) aaaGAATCAACAATACAACTGAAGACTTCTTCATTTTATGCATAAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAaagta > 1:3316447/1‑91 (MQ=255) aaGAATCAACAATACAACTGAAGACTTCTTCATTTTATGCATAAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAaagtaa > 2:2475667/1‑91 (MQ=255) aaGAATCAACAATACAACTGAAGACTTCTTCATTTTATGCATAAAAAAATCGGCGAGTCACGTG‑CTAGCCGACAAATAGAAAGGAaagtac > 2:3915600/1‑90 (MQ=255) aaTCAACAATACAACTGAAGACTTCTTCATTTTATGCATAAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAagtaagta < 1:1416841/91‑1 (MQ=255) aaTCAACAATACAACTGAAGACTTCTTCATTTGATGCATAAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAagtaagta < 2:629683/91‑1 (MQ=255) attaacaaTACAACTGAAGACTTCTTCATTTTATGCATAAAAAAATCGGTTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAgtaagtaa < 2:2694767/88‑1 (MQ=255) aTCAACAATACAACTGAAGACTTCTTCATTTTATGCATAAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAgtaagtaa < 1:752049/91‑1 (MQ=255) tCAACAATACAACTGAAGACTTCTTCATTTTATGCATAAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGtaat > 1:2546948/1‑91 (MQ=255) tCAACAATACAACTGAAGACTTCTTCATTTTATGCATAAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGtaat > 1:3656824/1‑91 (MQ=255) caacaaTACAACTGAAGACTTCTTCATTTTATGCATAAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGtaata < 1:1131828/91‑1 (MQ=255) caacaaTACAACTGAAGACTTCTTCATTTTATGCATAAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGtaata < 2:2835710/91‑1 (MQ=255) caacaaTACAACTGAAGACTTCTTCATTTTATGCATAAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGtaata < 2:2998681/91‑1 (MQ=255) caacaaTACAACTGAAGACTTCTTAATTTGATGCATAAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGtaata < 2:2849913/91‑1 (MQ=255) acaaTACAACTGAAGACTTCCTCATTTTATGCATAAAAAAATCGGCTAGTCACGTG‑CTCGCCGACAAAGAGAAAGGAAAGTAAGTaataaa > 2:211857/1‑91 (MQ=255) aaTACAACTGAAGACTTCTTCATTTTATGCATAAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTaataaata > 1:223854/1‑91 (MQ=255) aTACAACTGAAGACTTCTTCATTTTATGCATAAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAatat > 2:1460287/1‑91 (MQ=255) aTACAACTGAAGACTTCTTCATTTTATGCATAAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAatat > 2:1305939/1‑91 (MQ=255) tACAACTGAAGACTTCTTCATTTTATGCATAAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATAtt > 1:3088303/1‑91 (MQ=255) cAACTGAAGACTTCTTCATTTTATGCATAAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGa > 1:2145694/1‑91 (MQ=255) aaCTGAAGACTTCTTCATTTTATGCATAAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGaa < 2:3142920/91‑1 (MQ=255) aaCTGAAGACTTCTTCATTTTATGCATAAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGaa < 1:858138/91‑1 (MQ=255) aCTGAAGACTTCTTCATTTTATGCATAAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAg > 2:2205745/1‑91 (MQ=255) aCTGAAGACTTCTTCATTTTATGCATAAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAg < 1:985247/91‑1 (MQ=255) cTGAAGACTTCTTCATTTTATGCATAAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGa > 1:353606/1‑91 (MQ=255) tGAAGACTTCTTCATTTTATGCATAAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGAt > 2:2250687/1‑91 (MQ=255) gAAGACTTCTTCATTTTATGCATAAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGAtg < 2:718116/91‑1 (MQ=255) aGACTTCTTCATTTTATGCATAAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGAtgtt < 1:1068196/91‑1 (MQ=255) cttcttCATTTTATGCCAAAAAAAACTGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTtgtg < 2:3424290/91‑1 (MQ=255) cttcttCATTTTATGCATAAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTtgtg > 2:1694003/1‑91 (MQ=255) ttcttcATTTTATGCATAAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGa < 2:3551078/91‑1 (MQ=255) tcttcATTTTATGCATAAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGAt < 1:687378/91‑1 (MQ=255) cttcATTTTATGCATAAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATg > 1:1810837/1‑91 (MQ=255) cttcATTTCATGCATAAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATg > 2:367703/1‑91 (MQ=255) ttcATTTTATGCATAAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGt < 1:2497874/91‑1 (MQ=255) ttttATGCATAAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTAACt < 1:924211/91‑1 (MQ=255) aTGCATAAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTAACTTGaa < 1:3491354/91‑1 (MQ=255) aTGCATAAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTAACTTGaa < 2:295596/91‑1 (MQ=255) tGCATAAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTAACTTGAAc < 1:1010073/91‑1 (MQ=255) tGCATAAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTAACTTGAAc < 1:2265819/91‑1 (MQ=255) tGCATAAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTAACTTGAAc < 2:838419/91‑1 (MQ=255) gCATAAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTAACTTGAACg < 1:445816/91‑1 (MQ=255) gCATAAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTAACTTGAACg > 2:2919322/1‑91 (MQ=255) cATAAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTAACTTGAACGa > 2:3325318/1‑91 (MQ=255) aTAAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTAACTTGAACGAt > 1:32285/1‑91 (MQ=255) tAAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTAACTTGAACGAtt < 2:2013987/91‑1 (MQ=255) aaaaTCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTAACTTGAACGATTaaaa > 1:3910940/1‑91 (MQ=255) aaaTCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTAACTTGAACGATTAAAAg > 2:2822394/1‑91 (MQ=255) aaaTCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTAACTTGAACGATTAAAAg < 1:3933286/91‑1 (MQ=255) aaaTCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTAACTTGAACGATTAAAAg < 1:3727706/91‑1 (MQ=255) aTCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTAACTTGAACGATTAAAAGCt > 2:1409898/1‑91 (MQ=255) tCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTAACTTGAACGATTAAAAGCTa > 2:3860582/1‑91 (MQ=255) tCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTAACTTGAACGATTAAAAGCTa > 2:3842512/1‑91 (MQ=255) tCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTAACTTGAACGATTAAAAGCTa > 2:1584740/1‑91 (MQ=255) tCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTAACTTGAACGATTAAAAGCTa > 1:2115094/1‑91 (MQ=255) tCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTAACTTGAACGATTAAAAGCTa > 1:2031963/1‑91 (MQ=255) tCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTAACTTGAACGATTAAAAGCTa > 2:1846193/1‑91 (MQ=255) tCGGCTAG‑CACGTGACTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTAACTTGAACGATTAAAAGCTa > 1:3349894/1‑91 (MQ=255) cGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTAACTTGAACGATTAAAAGCTAt < 2:868892/91‑1 (MQ=255) cGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTAACTTGAACGATTAAAAGCTAt > 2:3960612/1‑91 (MQ=255) cGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTAACTTGAACGATTAAAAGCTAt < 2:3060960/91‑1 (MQ=255) gcgaGTCACGTG‑CTAGCCGACAAATAGAGAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTAACTTGAACGATTAAAAGCTATCt < 2:1047877/88‑1 (MQ=255) cTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTAACTTGAACGATTAAAAGCTATCTg > 2:2880211/1‑91 (MQ=255) cTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTAACTTGAACGATTAAAAGCTATCTg > 1:148767/1‑91 (MQ=255) tAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTAACTTGAACGATTAAAAGCTATCTGt < 2:3254869/91‑1 (MQ=255) tAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTAACTTGAACGATTAAAAGCTATCTGt < 1:2802690/91‑1 (MQ=255) tCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTAACTTGAACGATTAAAAGCTATCTGTtat < 1:2632104/91‑1 (MQ=255) tCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTAACTTGAACGATTAAAAGCTATCTGTtat > 1:2952466/1‑91 (MQ=255) gcACGTGACTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTAACTTGAACGATTAAAAGCTATCTGTta > 1:203153/2‑91 (MQ=255) cACGTGACTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTAACTTGAACGATTAAAAGCTATCTGTtat > 2:2727063/1‑91 (MQ=255) cACGTGACTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTAACTTGAACGATTAAAAGCTATCTGTtat > 1:1667855/1‑91 (MQ=255) cACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTAACTTGAACGATTAAAAGCTATCTGTtata < 1:1495374/91‑1 (MQ=255) cACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTAACTTGAACGATTAAAAGCTATCTGTtata < 1:116789/91‑1 (MQ=255) cACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTAACTTGAACGATTAAAAGCTATCTGTtata > 2:759615/1‑91 (MQ=255) cACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTAACTTGAACGATTAAAAGCTATCTGTtata < 1:510243/91‑1 (MQ=255) aCGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTAACTTGAACGATTAAAAGCTATCTGTtatat < 1:5172/91‑1 (MQ=255) g‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTAACTTGAACGATTAAAAGCTATCTGTTATATAGct < 1:2698933/91‑1 (MQ=255) g‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTAACTTGAACGATTAAAAGCTATCTGTTATATAGct > 1:3009055/1‑91 (MQ=255) | TTATCATTTTATTATTACCCTATATTAAAAGAATCAACAATACAACTGAAGACTTCTTCATTTTATGCATAAAAAAATCGGCTAGTCACGTG‑CTAGCCGACAAATAGAAAGGAAAGTAAGTAATAAATATTGAAGATGTTGTGATGTAACTTGAACGATTAAAAGCTATCTGTTATATAGCT > USA300TCH1516_ALE/2430600‑2430781 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |