| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | CP000731 | 20439 = | 584 (0.640) | 50 (0.090) | 14/154 | NT | 13.7% | coding (632/675 nt) | USA300HOU_pUSA300HOUMR0027 | IS431mec transposase |
| ? | USA300TCH1516_ALE | 35944 = | 69 (0.350) | coding (608/675 nt) | USA300HOU_RS00140 | hypothetical protein | |||||
TCAAAGTATCAATACGGCAAAGAATACTTTAAAAGGTATTGAATGTATTTACGCTCTATATAAAAAGAACCGTAGGTCTCTTCAGATCTACGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000731/20531‑20439‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTA > USA300TCH1516_ALE/35944‑36033 TCAAAGTATCAATACGGCAAAGAATACTTTAAAAGGTATTGAATGTATTTACGCTCTATATAAAAAGAACCGTAGGTCTCTTCAGCTCTAC > 2:1823786/1‑91TCAAAGTATCAATACGGCAAAGAATACTTTAAAAGGTATTGAATGTATTTACGCTCTATATAAAAAGAACCGTAGGTCTCTTCAGATCTAC > 1:1000867/1‑91TCAAAGTATCAATACGGCAAAGAATACTTTAAAAGGTATTGAATGTATTTACGCTCTATATAAAAAGAACCGTAGGTCTCTTCAGATCTAC > 2:3904927/1‑91TCAAAGTATCAATACGGCAAAGAATACTTTAAAAGGTATTGAATGTATTTACGCTCTATATAAAAAGAACCGTAGGTCTCTTCAGATCTAC < 1:729507/91‑1TCAAAGTATCAATACGGCAAAGAATACTTTAAAAGGTATTGAATGTATTTACGCTCTATATAAAAAGAACCGTAGGTCTCTTCAGATCTAC < 1:2666553/91‑1TCAAAGTATCAATACGGCAAAGAATACTTTAAAAGGTATTGAATGTATTTACGCTCTATATAAAAAGAACCGTAGGTCTCTTCAGATCTAC < 2:1407483/91‑1TCAAAGTATCAATACGGCAAAGAATACTTTAAAAGGTATTGAATGTATTTACGCTCTATATAAAAAGAACCGTAGGTCTCTTCAGATCTAC > 1:1488581/1‑91TCAAAGTATCAATACGGCAAAGAATACTTTAAAAGGTATTGAATGTATTTACGCTCTATATAAAAAGAACCGTAGGTCTCTTCAGATCTAC < 2:23025/91‑1 CAAAGTGTCAATACGGCAAAGAATACTTTAAAAGGTATTGAATGTATTTACGCTCTATATAAAAAGAACCGTAGGTCTCTTCAGATCTACG > 1:825226/1‑91 CAAAGTATCAATACGGCAAAGAATACTTTAAAAGGTATTGAATGTATTTACGCTCTATATAAAAAGAACCGTAGGTGTCTTCAGATCTACG > 1:3563891/1‑91 CAAAGTATCAATACGGCAAAGAATACTTTAAAAGGTATTGAATGTATTTACGCTCTATATAAAAAGAACCGTAGGTCTCTTCAGATCTACG < 2:2188359/91‑1 CAAAGTATCAATACGGCAAAGAATACTTTAAAAGGTATTGAATGTATTTACGCTCTATATAAAAAGAACCGTAGGTCTCTTCAGATCTACG < 1:3920994/91‑1 CAAAGTATCAATACGGCAAAGAATACTTTAAAAGGTATTGAATGTATTTACGCTCTATATAAAAAGAACCGTAGGTCTCTTCAGATCTACG < 2:2182737/91‑1 CAAAGTATCAATACGGCAAAGAATACTTTAAAAGGTATTGAATGTATTTACGCTCTATATAAAAAGAACCGTAGGTCTCTTCAGATCTACG < 1:43076/91‑1 CAAAGTATCAATACGGCAAAGAATACTTTAAAAGGTATTGAATGTATTTACGCTCTATATAAAAAGAACCGTAGGTCTCTTCAGATCTACG < 1:636712/91‑1 CAAAGTATCAATACGGCAAAGAATACTTTAAAAGGTATTGAATGTATTTACGCTCTATATAAAAAGAACCGTAGGTCTCTTCAGATCTACG > 1:1154981/1‑91 CAAAGTATCAATACGGCAAAGAATACTTTAAAAGGTATTGAATGTATTTACGCTCTATATAAAAAGAACCGTAGGTCTCTTCAGATCTACG < 1:2150596/91‑1 CAAAGTATCAATACGGCAAAGAATACTTTAAAAGGTATTGAATGTATTTACGCTCTATATAAAAAGAACCGTAGGTCTCTTCAGATCTACG > 1:3009318/1‑91 CAAAGTATCAATACGGCAAAGAATACTTTAAAAGGTATTGAATGTATTTACGCTCTATATAAAAAGAACCGTAGGTCTCTTCAGATCTACG < 1:2407947/91‑1 CAAAGTATCAATACGGCAAAGAATACTTTAAAAGGTATTGAATGTATTTACGCTCTATATAAAAAGAACCGTAGGTCTCTTCAGATCTACG < 2:1234478/91‑1 AAAGTATCAATACGGCAAAGAATACTTTAAAAGGTATTGAATGTATTTACGCTCTATATAAAAAGAACCGTAGGTCTCTTCAGATCTACGG < 2:3532804/91‑1 AAAGTATCAATACGGCAAAGAATACTTTAAAAGGTATTGAATGTATTTACGCTCTATATAAAAAGAACCGTAGGTCTCTTCAGATCTACGG > 1:1212058/1‑91 AAAGTATCAATACGGCAAAGAATACTTTAAAAGGTATTGAATGTATTTACGCTCTATATAAAAAGAACCGTAGGTCTCTTCAGATCTACGG < 1:2147176/91‑1 AAAGTATCAATACGGCAAAGAATACTTTAAAAGGTATTGAATGTATTTACGCTCTATATAAAAAGAACCGTAGGTCTCTTCAGATCTACGG < 1:2146917/91‑1 AAAGTATCAATACGGCAAAGAATACTTTAAAAGGTATTGAATGTATTTACGCTCTATATAAAAAGAACCGTAGGTCTCTTCAGATCTACGG < 2:1747890/91‑1 AAAGTATCAATACGGCAAAGAATACTTTAAAAGGTATTGAATGTATTTACGCTCTATATAAAAAGAACCGTAGGTCTCTTCAGATCTACGG < 1:2023788/91‑1 AAAGTATCAATACGGCAAAGAATACTTTAAAAGGTATGGAATGTATTTACGCTCTCTATAAAAAGAACCGTAGGTCTCTTCCGATCTACGG > 2:1726754/1‑91 AATACGGCAAAGAATACTTTAAAAGGTATTGAATGTATTTACGCTCTATATAAAAAGAACCGTAGATCTGAAGAGACCTACGGTTCTTTTT < 2:274106/91‑1 AAGAATACTTTAAAAGGTATTGAATGTATTTACGCTCTATATAAAAAGAACCGTAGGTCTCTTCAGATCTACGGTTATTTTTATATAGAGC > 2:2625155/1‑91 AGAACCGTAGGTCTCTTCAGATCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATA > 1:3773799/1‑91 AGAACCGTAGGTCTCTTCAGATCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATA > 1:3371779/1‑91 AACCGTAGGTCTCTTCAGATCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACT > 1:2803770/1‑91 CCGTAGGTCTCTTCAGATCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTT > 1:428763/1‑91 cgcAGGTCTCTTCAGATCTACGGTTCTTTTTATATAGAGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTG > 1:2389085/4‑91 CGTAGGTCTCTTCAGATCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTG > 1:164109/1‑91 GTAGGTCTCTTCAGATCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGA > 2:986720/1‑91 TAGGTCTCTTCAGATCTACGGTTCTTTTTATATAGCGCGTAAACACATTCAATACCTTTTAAAGTACTCTTTGCCGTATTGATACTTTGAT > 2:1557050/1‑91 TAGGTCTCTTCAGATCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGAT > 2:1933140/1‑91 TAGGTCTCTTCAGATCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGAT > 1:1120443/1‑91 TAGGTCTCTTCAGATCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGAT > 1:1134626/1‑91 TAGGTCTCTTCAGATCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGAT > 2:1935669/1‑91 TAGGTCTCTTCAGATCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGAT > 2:1933860/1‑91 AGGTCTCTTCAGATCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATA > 1:2879088/1‑91 GGTCTCTTCAGATCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATAt > 2:179685/1‑90 GGTCTCTTCAGATCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATAt > 2:3707496/1‑90 GTCTCTTCAGATCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATAtc > 1:2094638/1‑89 GTCTCTTCAGATCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATAtc > 2:2596066/1‑89 GTCTCTTCAGATCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATAtc > 2:3051209/1‑89 TCTCTTCAGATCTACGGTTCTTTTTATATAGAGCGTAACTACATTCAATAACTTTTACAGTATTCTTTGCCGTATTGATACTTTCATctct > 2:2519884/1‑87 TCTCTTCAGATCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATAtct > 1:983637/1‑88 TCTCTTCAGATCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCT > 2:2989967/1‑91 CTCTTCAGATCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTT > 1:3210735/1‑91 CTCTTCAGATCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTT > 1:1390193/1‑91 CTCTTCAGATCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTT > 1:3019458/1‑91 CTCTTCAGATCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTT > 1:3210766/1‑91 TCTTCAGATCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTt > 2:1126617/1‑90 TCTTCAGATCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTG > 1:1315027/1‑91 TCTTCAGATCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTG > 1:1997846/1‑91 TCTTCAGATCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTG > 2:2208458/1‑91 TCTTCAGATCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTG > 1:2016511/1‑91 TCTTCAGATCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTG > 1:2053005/1‑91 TCTTCAGATCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTG > 1:376754/1‑91 TCTTCAGATCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTG > 1:3805245/1‑91 TCTTCAGATCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTG > 1:578419/1‑91 TCTTCAGATCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTG > 1:3428667/1‑91 TCTTCAGATCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTG > 1:2145391/1‑91 TCTTCAGATCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTG > 1:3198329/1‑91 TCTTCAGATCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTG > 2:1455190/1‑91 TCTTCAGATCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTG > 1:315903/1‑91 TCTTCAGATCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTG > 1:2615244/1‑91 TCTTCAGATCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTG > 2:1296815/1‑91 TCTTCAGATCTACGGTTCTTTTTATATAGAGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTG > 2:246374/1‑91 TCTTCAGATCTACGGTTCTTTTTATATAGAGCGTAAATACACTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTG > 2:246392/1‑91 TCTTCAGATCTACGGTTCTTTTTATACAGAGCGTAAATACATTCAATACCTTTTAACGTATTCTTTGCCGTATTGATACTTTGATATCTTG > 2:839277/1‑91 CTTCAGATCTACGGTTCTTTTTATATTGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGT > 2:2220042/1‑91 CTTCAGATCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGT > 2:781209/1‑91 CTTCAGATCTACGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCCGTATTGATACTTTGATATCTTGT > 2:1147701/1‑91 CGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTT < 2:2070666/91‑1 CGGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTT > 1:918535/1‑91 GGTTCTTTTTATATAGAGCGTAAATACATTCACTACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTT > 2:2664440/1‑91 GGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTGTTACTTT > 2:1171863/1‑91 GGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTT > 1:1406025/1‑91 GGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTT < 2:231719/91‑1 GGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTT < 1:3165710/91‑1 GGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTT < 2:660084/91‑1 GGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTT > 1:2431161/1‑91 GGTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTT < 1:3165910/91‑1 GTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTA < 2:1189485/91‑1 GTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTA < 2:2269556/91‑1 TCAAAGTATCAATACGGCAAAGAATACTTTAAAAGGTATTGAATGTATTTACGCTCTATATAAAAAGAACCGTAGGTCTCTTCAGATCTACGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < CP000731/20531‑20439‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cggTTCTTTTTATATAGAGCGTAAATACATTCAATACCTTTTAAAGTATTCTTTGCTGTATTGATACTTTGATACCTTGTCTTTCTTACTTTA > USA300TCH1516_ALE/35944‑36033 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |