| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 221184 | 145 (0.710) | 11 (0.060) | 8/146 | NT | 7.2% | intergenic (‑230/+44) | ipdC/ptsG_1 | Indole‑3‑pyruvate decarboxylase/PTS system glucose‑specific EIICBA component |
| ? | USA300TCH1516_ALE | = 221210 | 153 (0.820) | intergenic (‑256/+18) | ipdC/ptsG_1 | Indole‑3‑pyruvate decarboxylase/PTS system glucose‑specific EIICBA component | |||||
GAAGGGGGGCTTTAATTGATGATCTTAAAATTCAAAATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/221088‑221184‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaacaggTGCGTATACCTTCATAAGGTGACGCGCCTGTTTTTTCTTTGCTATTGTATTTTGCAGCATCATTGATAGTTCGCTCTCCCCTTAAATTTT < USA300TCH1516_ALE/221210‑221121 GAAGGGGGGCTTTAATTGATGATCTTAAAATTCAAAATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAA > 2:36988/1‑91GAAGGGGGGCTTTAATTGATGATCTTAAAATTCAAAATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAA < 2:1144249/91‑1GAAGGGGGGCTTTAATTGATGATCTTAAAATTCAAAATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAA < 1:2371043/91‑1GAAGGGGGGCTTTAATTGATGATCTTAAAATTCAAAATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAA < 1:2370824/91‑1GAAGGGGGGCTTTAATTGATGATCTTAAAATTCAAAATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAA < 1:1907391/91‑1 AAGGGGGGCTTTAATTGATGATCTTAAAATTCAAAATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAA < 1:1014400/91‑1 AAGGGGGGCTTTAATTGATGATCTTAAAATTCAAAATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAA > 2:3856451/1‑91 AAGGGGGGCTTTAATTGATGATCTTAAAATTCAAAATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAA < 1:1513191/91‑1 AGGGGGGCTTTAATTGATGATCTTAAAATTCAAAATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAA > 1:1485482/1‑91 AGGGGGGCTTTAATTGATGATCTTAAAATTCAAAATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAA < 2:130613/91‑1 GGGGGGCTTTAATTGATGATCTTAAAATTCAAAATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAAC > 2:1122116/1‑91 GGGGGGCTTTAATTGATGATCTTAAAATTCAAAATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAAC < 1:557135/91‑1 GGGGGCTTTAATTGATGATCTTAAAATTCAAAATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACA > 1:3775469/1‑91 GGGGCTTTAATTGATGATCTTAAAATTCAAAATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAG < 1:1680959/91‑1 GGGGCTTTAATTGATGATCTTAAAATTCAAAATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAG > 1:484239/1‑91 GGGGCTTTAATTGATGATCTTAAAATTCAAAATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAG > 1:484277/1‑91 GGGCTTTAATTGATGATCTTAAAATTCAAAATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGG > 2:2166003/1‑91 GGGCTTTAATTGATGATCTTAAAATTCAAAATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGG < 1:403481/91‑1 AAATTCAAAATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGTGCGTATACCTTCATAAGGTG < 1:2628342/91‑1 TTCAAAATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAATACAGGTGCGTATACCTTCATAAGGTGACG < 1:3349484/91‑1 TCAAAATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGTGCGTATACCTTCATAAGGTGACGC < 2:2029364/91‑1 AAAATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGTGCGTATACCTTCATAAGGTGACGCGC < 1:189756/91‑1 AAATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGTGCGTATACCTTCATAAGGTGACGCGCC < 1:2957647/91‑1 AAATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGTGCGTATACCTTCATAAGGTGACGCGCC < 1:1288905/91‑1 AAATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGTGCGTATACCTTCATAAGGTGACGCGCC < 1:729091/91‑1 AATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGTGCGTATACCTTCATAAGGTGACGCGCCT < 2:1736053/91‑1 ATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGTGCGTATACCTTCATAAGGTGACGCGCCTG < 2:1432207/91‑1 TTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAACACAGGTGCGTATACCTTCATAAGGTGACGCGCCTGTT < 2:745480/91‑1 TTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGGTGCGTATACCTTCATAAGGTGACGCGCCTGTT < 2:288732/91‑1 AAACAGGTGCGTATACCTTCATAAGGTGACGCGCCTGTTTTTTCTTTGCTATTGTATTTTGCAGCATCATTGATAGTTCGCTCTCCCCTTA < 1:3753371/91‑1 AAACAGGTGCGTATACCTTCATAAGGTGACGCGCCTGTTTTTTCTTTGCTATTGTATTTTGCAGCATCATTGATAGTTCGCTCTCCCCTTA < 2:3746976/91‑1 AACAGGTGCGTATACCTTCATAAGGTGACGCGCCTGTTTTTTCTTTGCTATTGTATTTTGCAGCATCATTGATAGTTCGCTCTCCCCTTAA < 1:2898711/91‑1 AACAGGTGCGTATACCTTCATAAGGTGACGCGCCTGTTTTTTCTTTGCTATTGTATTTTGCAGCATCATTGATAGTTCGCTCTCCCCTTAA > 1:2670790/1‑91 AACAGGTGCGTATACCTTCATAAGGTGACGCGCCTGTTTTTTCTTTGCTATTGTATTTTGCAGCATCATTGATAGTTCGCTCTCCCCTTAA > 1:1335834/1‑91 ACAGGTGCGTATACCTTCATAAGGTGACGCGCCTGTTTTTTCTTTGCTATTGTATTTTGCAGCATCATTGATAGTTCGCTCTCCCCTTAAA > 2:1427952/1‑91 CAGGTGCGTATACCTTCATAAGGTGACGCGCCTGTTTTTTCTTTGCTATTGTATTTTGCAGCATCATTGATAGTTCGCTCTCCCCTTAAAT > 2:2054161/1‑91 AGGTGCGTATACCTTCATAAGGTGACGCGCCTGTTTTTTCTTTGCTATTGTATTTTGCAGCATCATTGATAGTTCGCTCTCCCCTTAAATT > 1:3434536/1‑91 AGGTGCGTATACCTTCATAAGGTGACGCGCCTGTTTTTTCTTTGCTATTGTATTTTGCAGCATCATTGATAGTTCGCTCTCCCCTTAAATT < 1:1794234/91‑1 AGGTGCGTATACCTTCATAAGGTGACGCGCCTGTTTTTTCTTTGCTATTGTATTTTGCAGCATCATTGATAGTTCGCTCTCCCCTTAAATT < 1:1794233/91‑1 AGGTGCGTATACCTTCATAAGGTGACGCGCCTGTTTTTTCTTTGCTATTGTATTTTGCAGCATCATTGATAGTTCGCTCTCCCCTTAAATT < 2:2721240/91‑1 AGGTGCGTATACCTTCATAAGGTGACGCGCCTGTTTTTTCTTTGCTATTGTATTTTGCAGCATCATTGATAGTTCGCTCTCCCCTTAAATT > 1:111478/1‑91 AGGTGCGTATACCTTCATAAGGTGACGCGCCTGTTTTTTCTTTGCTATTGTATTTTGCAGCATCATTGATAGTTCGCTCTCCCCTTAAATT > 1:111445/1‑91 GTGCGTATACCTTCATAAGGTGACTCGCCTGTTTTTTCTTTGCTATTGTATTTTGCAGCATCATTGATAGTTCGCTCTCCCCTTAAATTTT < 2:3680631/91‑1 GTGCGTATACCTTCATAAGGTGACGCGCCTGTTTTTTCTTTGCTATTGTATTTTGCAGCATCATTGATAGTTCGCTCTCCCCTTAAATTTT > 1:941267/1‑91 GAAGGGGGGCTTTAATTGATGATCTTAAAATTCAAAATTTAAGGGGAGAGCGAACTATCAATGATGCTGCAAAATACAATAGCAAAGAAAAAACAGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > USA300TCH1516_ALE/221088‑221184‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaacaggTGCGTATACCTTCATAAGGTGACGCGCCTGTTTTTTCTTTGCTATTGTATTTTGCAGCATCATTGATAGTTCGCTCTCCCCTTAAATTTT < USA300TCH1516_ALE/221210‑221121 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |