| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 2357390 | 155 (0.760) | 10 (0.060) | 9/140 | NT | 6.5% | intergenic (‑340/+198) | ecfA1/rplQ | Energy‑coupling factor transporter ATP‑binding protein EcfA1/50S ribosomal protein L17 |
| ? | USA300TCH1516_ALE | = 2357406 | 152 (0.850) | intergenic (‑356/+182) | ecfA1/rplQ | Energy‑coupling factor transporter ATP‑binding protein EcfA1/50S ribosomal protein L17 | |||||
Only 100 of 298 total aligned reads displayed.
CTTCATTCAGTTCTAGTGAAATTGATCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTT > USA300TCH1516_ALE/2357300‑2357480 | attcaGTTCTAGTGAAATTGATCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTaaaaa < 1:995254/91‑1 (MQ=255) aGTTCTAGTGAAATTGATCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACAtt < 1:472914/91‑1 (MQ=255) gTTCTAGTGAAATTGATCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACAttt > 1:3256759/1‑91 (MQ=255) gTTCTAGTGAAATTGATCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACAttt > 1:2692122/1‑91 (MQ=255) gTTCTAGTGAAATTGATCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACAttt > 1:898027/1‑91 (MQ=255) ttCTAGTGAAATTGATCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTc > 1:733664/1‑91 (MQ=255) cTAGTGAAATTGATCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTg < 2:495517/91‑1 (MQ=255) cTAGTGAAATTGATCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTg > 1:800915/1‑91 (MQ=255) cTAGTGAAATTGATCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTg < 2:3606650/91‑1 (MQ=255) aaataaagatttaaagcgtgaactcaacaaacttatgatggggtgcgcgcttttttattgaataaaatATCGGACTTAAAAACATTTCTGt > 1:597259‑M1/69‑91 (MQ=255) aGTGAAATTGATCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGtt < 2:3159926/91‑1 (MQ=255) gTGAAATTGATCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAtgaacagaaatgttt < 1:102255‑M1/91‑16 (MQ=255) taaagatttaaagcgtgaactcaacaaacttatgatggggtgcgcgcttttttattgaataaaatATCGGACTTAAAAACATTTCTGTTCa > 2:981252‑M1/66‑91 (MQ=255) taaagatttaaagcgtgaactcaacaaacttatgatggggtgcgcgcttttttattgaataaaatATCGGACTTAAAAACATTTCTGTTCa > 2:3258355‑M1/66‑91 (MQ=255) tGAAATTGATCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCa > 1:2818391/1‑91 (MQ=255) aaaTTGATCAAACTAGCTTTATTAAATTGTTAGATTCGCACTCAAAAAAGTTAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCAta > 2:2353456‑M2/1‑89 (MQ=255) aaTTGATCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCAtaa < 2:338843‑M2/91‑4 (MQ=255) aTTGATCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCAtaag > 2:1406124‑M2/1‑87 (MQ=255) aTTGATCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCAtaag > 2:659461‑M2/1‑87 (MQ=255) ttGATCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAtgaacagaaatgtttttaagt < 1:3215040‑M1/91‑22 (MQ=255) ttGATCAAACTAGCTTCATCATATTTTTAGATTCGAAAAAAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCAtaagt > 2:3105168‑M2/1‑86 (MQ=255) tGATCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAtgaacagaaatgtttttaagtc < 1:3754134‑M1/91‑23 (MQ=255) tGATCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCAtaagtc < 2:92251‑M2/91‑7 (MQ=255) aTCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCAtaagtccg > 1:3648184‑M2/1‑83 (MQ=255) aTCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCAtaagtccg > 1:1483756‑M2/1‑83 (MQ=255) tCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCAtaagtccga > 1:57722‑M2/1‑82 (MQ=255) tCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCAtaagtccga < 1:3934071‑M2/91‑10 (MQ=255) cAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCAtaagtccgat > 1:3715659‑M2/1‑81 (MQ=255) aaaCTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGata > 1:1594452/1‑91 (MQ=255) aaCTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGatat > 2:2124344/1‑91 (MQ=255) acgaGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATAtt < 2:3855532/88‑1 (MQ=255) aCTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATAtt < 2:370675/91‑1 (MQ=255) aCTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATAtt > 1:3092396/1‑91 (MQ=255) tAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATAtttt > 1:2568392/1‑91 (MQ=255) agattCATCATATTTTTAGAAAAGAAAAAAAAAAAGTAAATATAAAGAAATCGGACTTAAAAATATTTCTGTTCATAAGTCCGATATTTTa < 2:1191205/88‑1 (MQ=25) aGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTa < 1:3907433/91‑1 (MQ=255) gCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTAt > 1:2089155/1‑91 (MQ=255) gCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTAt < 1:1229763/91‑1 (MQ=255) gCTTCATCATATATTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTAt > 1:3034173/1‑91 (MQ=255) cTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTAtt > 2:2674402/1‑91 (MQ=255) ttCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTc < 2:3558595/91‑1 (MQ=255) ttCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTc > 1:3319326/1‑91 (MQ=255) tcatcaTATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCa > 2:1354072/1‑91 (MQ=255) catcatATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCaa > 1:1720934/1‑91 (MQ=255) atcatATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAAt > 2:1535041/1‑91 (MQ=255) ttttAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAg < 1:2256621/91‑1 (MQ=255) tttAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAgc > 1:2071741/1‑91 (MQ=255) ttCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCAc < 1:292095/91‑1 (MQ=255) tCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCAcc < 1:607225/91‑1 (MQ=255) cGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCAccc < 1:3601767/91‑1 (MQ=255) aCTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCcat > 2:2900163/1‑91 (MQ=255) aCTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCcat < 2:568017/91‑1 (MQ=255) cTCAAAAAAGTAAATATAAAGAAATCGGACTTATAAACATTTCTGTTCATAAGTCCGATCTTTTATTCAATAAAAAAGCGCGCACCCcatc < 1:3515486/91‑1 (MQ=255) tCAAATAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCTCCCcatca < 2:2904429/91‑1 (MQ=255) cAAAAAAGTAAATATAAAGCAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCcatcat > 2:3459596/1‑91 (MQ=255) cAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCcatcat < 1:3179051/91‑1 (MQ=255) aaaaaGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATaa > 2:852950/1‑91 (MQ=255) aaaaaGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATaa > 2:1916911/1‑91 (MQ=255) aataGTAAATGTAAAGAAATCGGACTTAAAAACACTTCTGTTCATAAGTCCGATATTTAATTCAATAAAAAAGCGCGCACCCCATCATAAg < 2:3087997/88‑1 (MQ=38) aaaaGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCAtaagtccgatttctttatatttacttttttgagtgcgaatctaaaaa > 2:689994‑M2/1‑44 (MQ=255) aaaaGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAg < 1:1081928/91‑1 (MQ=255) aaaGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGt < 2:384158/91‑1 (MQ=255) aaaGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGt > 2:2433343/1‑91 (MQ=255) aaGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGtt < 1:3639719/91‑1 (MQ=255) aGTAAATATAAAGAAATCGGACTTAAAAAAATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGttt > 2:3449632/1‑91 (MQ=255) gTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTttg < 1:1258130/91‑1 (MQ=255) tAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTttgt < 1:1622436/91‑1 (MQ=255) aaaTATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTttgtt > 1:1942823/1‑91 (MQ=255) aaTATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTttgttg > 2:3194388/1‑91 (MQ=255) aaTATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTttgttg > 2:820939/1‑91 (MQ=255) aaaGATATCGGACTGAAGAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAATCGCGCACCCCATCATAAGTTTGTTGAGTTc < 2:2503762/91‑1 (MQ=38) aGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCAc < 1:1841253/91‑1 (MQ=255) gAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACg < 2:2539934/91‑1 (MQ=255) aaaTCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGc > 2:1316738/1‑91 (MQ=255) aaTCGGACTTAGAAACATTTCTGGTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCt < 2:3020419/91‑1 (MQ=255) ATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCtt > 1:3852519‑M1/1‑91 (MQ=255) ATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCtt > 2:2346273‑M1/1‑91 (MQ=255) tCGGACTTAtgaacagaaatgtttttaagtccgatttctttatatttacttttttgtgtgctaatctaaaaatatgatgaagctagtttgt > 2:1585751‑M1/1‑9 (MQ=255) tCGGACTTAtgaacagaaatgtttttaagtccgatttctttatatttacttttttgagtgcgaatctaaaaatatgatgaagctagtttga < 2:2745350‑M1/91‑83 (MQ=255) tCGGACTTAtgaacagaaatgtttttaagtccgatttctttatatttacttttttgagtgcgaatctaaaaatatgatgaagctagtttga > 1:2155910‑M1/1‑9 (MQ=255) tCGGACTTAtgaacagaaatgtttttaagtccgatttctttatatttacttttttgagtgcgaatctaaaaatatgatgaagctagtttga < 2:1332796‑M1/91‑83 (MQ=255) tCGGACTTAtgaacagaaatgtttttaagtccgatttctttatatttacttttttgagtgcgaatctaaaaatatgatgaagctagtttga > 1:1718117‑M1/1‑9 (MQ=255) tCGGACTTAtgaacagaaatgtttttaagtccgatttctttatatttacttttttgagtgcgaatctaaaaatatgatgaagctagtttga < 2:1714234‑M1/91‑83 (MQ=255) cGGACTTAtgaacagaaatgtttttaagtccgatttctttatatttacttttttgagtgcgaatctaaaaatatgatgaagctagtttgat < 1:1984994‑M1/91‑84 (MQ=255) cGGACTTAtgaacagaaatgtttttaagtccgatttctttatatttacttttttgagtgcgaatctaaaaatatgatgaagctagtttgat > 2:2146537‑M1/1‑8 (MQ=255) CGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTa < 2:2056512‑M1/91‑1 (MQ=255) ggACTTAtgaacagaaatgtttttaagtccgatttctttatatttacttttttgagtgcgaatctaaaaatatgatgaagctagtttgatc < 1:2051407‑M1/91‑85 (MQ=255) ggACTTAAAAACATTTCTGTTCAtaagtccgatttctttatatttacttttttgagtgcgaatctaaaaatatgatgaagctagtttgatc < 2:1460562‑M2/91‑69 (MQ=255) GGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATTATAAGTTTGTTGAGTTCACGCTTTaa > 2:2236785‑M1/1‑91 (MQ=255) GGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTaa < 1:1291802‑M1/91‑1 (MQ=255) gACTTAtgaacagaaatgtttttaagtccgatttctttatatttacttttttgagtgcgaatctaaaaatatgatgaagctagtttgatca < 2:1156573‑M1/91‑86 (MQ=255) gACTTAtgaacagaaatgtttttaagtccgatttctttatatttacttttttgagtgcgaatctaaaaatatgatgaagctagtttgatca < 2:1440850‑M1/91‑86 (MQ=255) GACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTaaa < 2:1891592‑M1/91‑1 (MQ=255) aCTTAtgaacagtaatgtttttaagtccgatttctttatatttacttttttgagtgcgaatctaaaaatatgatgaagctagtttgatcaa > 1:3048654‑M1/1‑5 (MQ=255) cTTAtgaacagaaatgtttttaagtccgatttctttatatttacttttttgagtgcgaatctaaaaatatgatgaagctagtttgatcaat > 1:2374516‑M1/1‑4 (MQ=255) ttAtgaacagaaatgtttttaagtccgatttctttatatttacttttttgagtgcgaatctaaaaatatgatgaagctagtttgatcaatt < 2:338814‑M1/91‑89 (MQ=255) TTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCt > 1:1470594‑M1/1‑91 (MQ=255) tAtgaacagaaatgcttttaagtccgctttctttatatttacttttttgagtgcgaatctaaaaatatgatgaagctagtttgatcaattt > 2:2352729‑M1/1‑2 (MQ=255) aaaaaCATTTCTGTTCAtaagtccgatttctttatatttacttttttgagtgcgaatctaaaaatatgatgaagctagtttgatcaatttc < 1:11587‑M2/91‑75 (MQ=255) AAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCttt > 2:428979‑M1/1‑91 (MQ=255) | CTTCATTCAGTTCTAGTGAAATTGATCAAACTAGCTTCATCATATTTTTAGATTCGCACTCAAAAAAGTAAATATAAAGAAATCGGACTTAAAAACATTTCTGTTCATAAGTCCGATATTTTATTCAATAAAAAAGCGCGCACCCCATCATAAGTTTGTTGAGTTCACGCTTTAAATCTTT > USA300TCH1516_ALE/2357300‑2357480 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |