New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP000731	= 12901	NA (NA)	6 (0.010)	3/146	NT	NA	coding (395/675 nt)	USA300HOU_pUSA300HOUMR0016	IS257 transposase
	?	CP000731	= 12938	NA (NA)					coding (432/675 nt)	USA300HOU_pUSA300HOUMR0016	IS257 transposase

CTCAAAAGGTAATTACAGATCAGGCACCTTCAACGAAGGTAGCAATGGTTAAAGTAATTAAAGCTTTTAAACTTAAACCTGACTGCCATTGTACATCGAAAT  >  CP000731/12886‑12987                |                                                                                       ctgaaaaGGTAATTACAGACCAGGCACCTACAACGAAGGTAGCAATGGTTAAAGTAATTAAAGCTTTTAAACTTAAACCTGACTGCCATTg             <  2:3397496/88‑1 (MQ=0)   cacaaGGTAATTACAGATCAGGCACCTTCAACGCAGGTAGCAATGGTTAAAGTAATTAAAGCTTTTAAACTTAAACCTGACTGCCATTGTa           <  2:1245552/88‑1 (MQ=0)            atgaCAGATCAGGCACCTTCAACGTAGGTAGCAATGGTTAAAGTAATTAAGGCTTTTAAACTTAAACCTGACTGCCATTGTACATCGAAat  <  2:3665284/88‑1 (MQ=0)                |                                                                                       CTCAAAAGGTAATTACAGATCAGGCACCTTCAACGAAGGTAGCAATGGTTAAAGTAATTAAAGCTTTTAAACTTAAACCTGACTGCCATTGTACATCGAAAT  >  CP000731/12886‑12987

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.