| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | USA300TCH1516_ALE | = 1205323 | NA (NA) | 41 (0.220) +AGCGAA |
10/148 | NT | 30.1% | intergenic (‑204/‑365) | USA300HOU_RS15290/lspA | hypothetical protein/Lipoprotein signal peptidase |
| ? | USA300TCH1516_ALE | 2478509 = | 103 (0.510) | intergenic (+396/‑179) | USA300HOU_RS12760/USA300HOU_RS12765 | hypothetical protein/hypothetical protein | |||||
Only 100 of 228 total aligned reads displayed.
CCCAACCGGCACATTGTTGTAAGCTGACTATATGTCAGCTTCTGTGTTGGGGCCCCTGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATT‑AATACTACGTATTAACATGTAATTTTACTTTTAAATACTTTAAAAAAATAAGACACTTTGGCCAACTTAAGCCAGGATACAATTT > USA300TCH1516_ALE/2478419‑2478599 | acatgttaatacgtagtattaatggcgagactcctgagggagcagtgccagtcgaagaccgaggctgagacggcaccctaggaaagcgaag > 2:1439243‑M2/91‑91 (MQ=255)acatgttaatacgtagtattaatggcgagactcctgagggagcagtgccagtcgaagaccgaggctgagacggcaccctaggaaagcgaag < 1:18404‑M2/1‑1 (MQ=255)acatgttaatacgtagtattaatggcgagactcctgagggagcagtgccagtcgaagaccgaggctgagacggcaccctaggaaagcgaag < 2:2126975‑M2/1‑1 (MQ=255)acatgttaatacgtagtattaatggcgagactcctgagggagcagtgccagtcgaagaccgaggctgagacggcaccctaggaaagcgaag > 1:2012919‑M2/91‑91 (MQ=255)acatgttaatacgtagtattaatggcgagactcctgagggagcagtgccagtcgaagaccgaggctgagacggcaccctaggaaagcgaag < 1:2116079‑M2/1‑1 (MQ=255)acatgttaatacgtagtattaatggcgagactcctgagggagcagtgccagtcgaagaccgaggctgagacggcaccctaggaaagcgaag > 2:1869293‑M2/91‑91 (MQ=255)acatgttaatacgtagtattaatggcgagactcctgagggagcagtgccagtcgaagaccgaggctgagacggcaccctaggaaagcgaag < 1:459719‑M2/1‑1 (MQ=255)acatgttaatacgtagtattaatggcgagactcctgagggagcagtgccagtcgaagaccgaggctgagacggcaccctaggaaagcgaag < 2:1063605‑M2/1‑1 (MQ=255) catgttaatacgtagtattaatggcgagactcctgagggagcagtgccagtcgaagaccgaggctgagacggcaccctaggaaagcgaaGc < 2:1261461‑M2/2‑1 (MQ=255) catgttaatacgtagtattaatggcgagactcctgagggagcagtgccagtcgaagaccgaggctgagacggcaccctaggaaagcgaaGc < 2:2569741‑M2/2‑1 (MQ=255) catgttaatacgtagtattaatggcgagactcctgagggagcagtgccagtcgaagaccgaggctgagacggcaccctaggaaagcgaaGc > 2:3488541‑M2/90‑91 (MQ=255) catgttaatacgtagtattaatggcgagactcctgagggagcagtgccagtcgaagaccgaggctgagacggcaccctaggaaagcgaaGc < 1:3797790‑M2/2‑1 (MQ=255) catgttaatacgtagtattaatggcgagactcctgagggagcagtgccagtcgaagaccgaggctgagacggcaccctaggaaagcgaaGc > 2:190081‑M2/90‑91 (MQ=255) catgttaatacgtagtattaatggcgagactcctgagggagcagtgccagtcgaagaccgaggctgagacggcaccctaggaaagcgaaGc < 1:1633250‑M2/2‑1 (MQ=255) catgttaatacgtagtattaatggcgagactcctgagggagcagtgccagtcgaagaccgaggctgagacggcaccctaggaaagcgaaGc < 1:2432894‑M2/2‑1 (MQ=255) catgttaatacgtagtattaatggcgagactcctgagggagcagtgccagtcgaagaccgaggctgagacggcaccctaggaaagcgaaGc > 2:549931‑M2/90‑91 (MQ=255) catgttaatacgtagtattaatggcgagactcctaagggagcagtgccagtcgaagaccgaggctgagacggcaccctaggaaagcgaaGc < 2:71301‑M2/2‑1 (MQ=255) atgttaatacgtagtattaatggcgagactcctgagggagcagtgccagtcgaagaccgaggctgagacggcaccctaggaaagcgaaGcc > 1:1757825‑M2/89‑91 (MQ=255) atgttaatacgtagtattaatggcgagactcctgagggagcagtgccagtcgaagaccgaggctgagacggcaccctaggaaagcgaaGcc < 1:589874‑M2/3‑1 (MQ=255) tgttaatacgtagtattaatggcgagactcctgagggagcagtgccagtcgaagaccgaggctgagacggcaccctaggaaagcgaaGCCa > 2:2215530‑M2/88‑91 (MQ=255) gttagtacgtagtattaatggcgagactcctgagggagcagtgccggtcgaagaccgaggctgagacgggaccctaggaaagcgaaGCCAt < 2:2503784‑M2/5‑1 (MQ=255) gttaatacgtagtattaatggcgagactcctgagggagcagtgccagtcgaagaccgaggctgagacggcaccctaggaaagcgaaGCCAt < 1:3228090‑M2/5‑1 (MQ=255) gttaatacgtagtattaatggcgagactcctgagggagcagtgccagtcgaagaccgaggctgagacggcaccctaggaaagcgaaGCCAt < 1:1446998‑M2/5‑1 (MQ=255) gttaatacgtagtattaatggcgagactcctgagggagcagtgccagtcgaagaccgaggctgagacggcaccctaggaaagcgaaGCCAt < 2:3135242‑M2/5‑1 (MQ=255) gttaatacgtagtattaatggcgagactcctgagggagcagtgccagtcgaagaccgaggctgagacggcaccctaggaaagcgaaGCCAt < 2:1097534‑M2/5‑1 (MQ=255) gttaatacgtagtattaatggcgagactcctgagggagcagtgccagtcgaagaccgaggctgagacggcaccctaggaaagcgaaGCCAt > 1:2939478‑M2/87‑91 (MQ=255) ttaatacgtagtattaatggcgagactcctgagggagcagtgccagtcgaagaccgaggctgagacggcaccctaggaaagcgaaGCCAtt < 1:1541507‑M2/6‑1 (MQ=255) ttaatacgtagtattaatggcgagactcctgagggagcagtgccagtcgaagaccgaggctgagacggcaccctaggaaagcgaaGCCAtt < 1:842160‑M2/6‑1 (MQ=255) ttaatacgtagtattaatggcgagactcctgagggagcagtgccagtcgaagaccgaggctgagacggcaccctaggaaagcgaaGCCAtt < 1:2989099‑M2/6‑1 (MQ=255) ttaatacgtagtattaatggcgagactcccgagggagcagtgccagtcgaagaccgaggctgagacggcaccctaggaaagcgaaGCCAtt < 2:2985799‑M2/6‑1 (MQ=255) cgtagtattaatggcgagactcctgagggagcagtgccagtcgaagaccgaggctgagacggcaccctaggaaagcgaaGCcatt‑aaatac > 2:3639464‑M2/80‑87 (MQ=255) attaatggcgagactcctgagggagcagtgccagtcgaagaccgaggctgagacggcaccctaggaaagcgaaGCCATTCAATACTACGTa > 1:2109916‑M2/74‑91 (MQ=255) ttaatggcgagactcctgagggagcagtgccagtcgaagaccgaggctgagacggcaccctaggaaagcgaaGCCATTCAATACTACGTAt > 1:1229314‑M2/73‑91 (MQ=255) ttaatggcgagactcctgagggagcagtgccagtcgaagaccgaggctgagacggcaccctaggaaagcgaaGCCATTCAATACTACGTAt > 1:3604463‑M2/73‑91 (MQ=255) taatggcgagactcctgagggagcagtgccagtcgaagaccgaggctgagacggcaccctaggaaagcgaaGCCATTCAATACTACGTAtt > 2:1408760‑M2/72‑91 (MQ=255) aatggcgagactcctgagggagcagtgccagtcgaagaccgcggctgagacggcaccctaggaaagcgaaGCCATTCAATACTACGTATTa > 1:3422133‑M2/71‑91 (MQ=255) atggcgagactcctgagggagcagtgccagtcgaagaccgaggctgagacggcaccctaggaaagcgaaGCCATT‑AATACTACGTATTAAc > 2:926866‑M2/70‑91 (MQ=255) atggcgagactcctgagggagcagtgccagtcgaagaccgaggctgagacggcaccctaggaaagcgaaGCCATT‑AATACTACGTATTAAc > 1:3482767‑M2/70‑91 (MQ=255) atggcgagactcctgagggagcagtgccagtcgaagaccaaggctgagacggcaccctaggaaagcgaaGCCATTCAATACTACGTATTaa > 1:1083988‑M2/70‑91 (MQ=255) atggcgagactcctgagggagcagtgccagtcgaagaccaaggctgagacggcaccctaggaaagcgaaGCCATT‑AATACTACGTATTAAc > 1:2494090‑M2/70‑91 (MQ=255) gcgagactcctgagggagcagtgccagtcgaagaccgaggctgagacggcaccctaggaaagcgaaGCCATT‑AATACTACGTATTAACATg > 2:2079123‑M2/67‑91 (MQ=255) gcgagactcctgagggagcagtgccagtcgaagaccaaggctgagacggcaccctaggaaagcgaaGCCATT‑AATACTACGTATTAACATg > 1:2462587‑M2/67‑91 (MQ=255) agactcctgagggagcagtgccagtcgaagaccaaggctgagacggcaccctaggaaagcgaaGCCATT‑AATACTACGTATTAACATGTaa > 2:2800562‑M2/64‑91 (MQ=255) agactcctgagggagcagtgccagtcgaagaccaaggctgagacggcaccctaggaaagcgaaGCCATT‑AATACTACGTATTAACATGTaa > 2:491595‑M2/64‑91 (MQ=255) agactcctgagggagcagtgccagtcgaagaccaaggctgagacgccaccctaggaaagcgaaGCCATT‑AATACTACGTATTAACATGTaa > 1:3284903‑M2/64‑91 (MQ=255) ctgagggagcagtgccagtcgaagaccgaggctgagacggcaccctaggaaagcgaaGCCATT‑AATACTACGTATTAACATGTAATTTTAc > 1:3846427‑M2/58‑91 (MQ=255) gCTTCTGTGTTGGGGCCCCTGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATT‑AATACTACGTATTAACATGTAATTTTACtttt < 1:240830/91‑1 (MQ=31) cTTCTGTGTTGGGGCCCCTGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATT‑AATACTACGTATTAACATGTAATTTTACTTTTa < 2:3797942/91‑1 (MQ=32) ttCTGTGTTGGGGCCCCTGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATT‑AATACTACGTATTAACATGTAATTTTACTTTTaa > 2:2927463/1‑91 (MQ=33) cTGTGTTGGGGCCCCTGTCTTCGACTGGCACTGCTCCCTCGGGAGTCTCGCCATT‑AATACTACGTATTAACATGTAATTTTACTTTTAAAt > 1:1612426/1‑91 (MQ=21) gtgtTGGGGCCCCTGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATT‑AATACTACGTATTAACATGTAATTTTACTTTTAAATAc > 1:1016890/1‑91 (MQ=34) tgtTGGGGCCCCTGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATT‑AATACTACGTATTAACATGTAATTTTACTTTTAAATACt < 1:735581/91‑1 (MQ=35) tgtTGGGGCCCCTGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATT‑AATACTACGTATTAACATGTAATTTTACTTTTAAATACt > 2:1909013/1‑91 (MQ=35) gtTGGGGCCCCTGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATT‑AATACTACGTATTAACATGTAATTTTACTTTTAAATACtt < 1:1578211/91‑1 (MQ=37) gtTGGGGCCCCTGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATT‑AATACTACGTATTAACATGTAATTTTACTTTTAAATACtt > 1:3250210/1‑91 (MQ=37) ttGGGGCCCCTGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATT‑AATACTACGTATTAACATGTACTTTTACTTTTAAATACttt > 2:860896/1‑91 (MQ=37) ggggCCCCTGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATT‑AATACTACGTATTAACATGTAATTTTACTTTTAAATACTTTaa > 1:1147034/1‑91 (MQ=39) ggggCCCCTGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATT‑AATACTACGTATTAACATGTAATTTTACTTTTAAATACTTTaa > 1:2618144/1‑91 (MQ=39) gggCCCCTGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATT‑AATACTACGTATTAACATGTAATTTTACTTTTAAATACTTTaaa < 2:3085016/91‑1 (MQ=39) gggCCCCTGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATT‑AATACTACGTATTAACATGTAATTTTACTTTTAAATACTTTaaa < 1:492644/91‑1 (MQ=37) ccccTGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATT‑AATACTACGTATTAACATGTAATTTTACTTTTAAATACTTTaaaaaa > 2:2003583/1‑91 (MQ=35) cccTGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATT‑AATACTACGTATTAACATGTAATTTTACTTTTAAATACTTTaaaaaaa > 1:1260744/1‑91 (MQ=34) cccTGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATT‑AATACTACGTATTAACATGTAATTTTACTTTTAAATACTTTaaaaaaa > 2:3144757/1‑91 (MQ=34) tGTCTTCGACTGGCAATGATCCCTCAGGAGTCTCGCTATT‑AATACTATGTATTAACATGTAATTTTACTTTTAAATACTGTAAAAAAATaa < 2:446714/91‑1 (MQ=11) tCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATT‑AATACTACGTATTAACATGTAATTTTACTTTTAAATACTTTAAAAAAATAAGacac < 1:1000858/91‑1 (MQ=31) tCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATT‑AATACTACGTATTAACATGTAATTTTACTTTTAAATACTTTAAAAAAATAAGacac > 2:821801/1‑91 (MQ=31) gACTGGCACTGCTCCCTCAGGAGTCTCGCCATT‑AATACTACGTATTAACATGTAATTTTACTTTTAAATACTTTATAAAAATAAGACACtt < 1:3367626/91‑1 (MQ=18) gACTGGCACTGCTCCCTCAGGAGTCTCGCCATT‑AATACTACGTATTAACATGTAATTTTACTTTTAAATACTTTAAAAAAATAAGACACtt > 1:1332842/1‑91 (MQ=33) gACTGGCACTGCTCCCTCAGGAGTCTCGCCATT‑AATACTACGTATTAACATGTAATTTTACTTTTAAATACTTTAAAAAAATAAGACACtt < 2:1946589/91‑1 (MQ=33) cTGGCACTGCTCCCTCAGGAGTCTCGCCATT‑AATACTACGTATTAACATGTAATTTTACTTTTAAATACTTTAAAAAAATAAGACACTTTg > 1:2253921/1‑91 (MQ=34) cACTGCTCCCTCAGGAGTCTCGCCATT‑AATACTACGTATTAACATGTAATTTTACTTTTAAATACTTTAAAAAAATAAGACACTTTGGCCa > 1:3006962/1‑91 (MQ=39) aCTGCTCCCTCAGGAGTCTCGCCATT‑AATACTACGTATTAACATGTAATTTTACTTTTAAATACTTTAAAAAAATAAGACACTTTGGCCaa < 1:606410/91‑1 (MQ=39) cTGCTCCCTCAGGAGTCTCGCCATT‑AATACTACGTATTAACATGTAATTTTACTTTTAAATACTTTAAAAAAATAAGACACTTTGGCCAAc < 1:977764/91‑1 (MQ=39) cTGCTCCCTCAGGAGTCTCGCCATT‑AATACTACGTATTAACATGTAATTTTACTTTTAAATACTTTAAAAAAATAAGACACTTTGGCCAAc < 2:3390002/91‑1 (MQ=39) tGCTCCCTCAGGAGTCTCGCCATT‑AATACTACGTATTAACATGTAATTTTACTTTTAAATACTTTAAAAAAATAAGACACTTTGGCCAACt > 1:1480737/1‑91 (MQ=38) tGCTCCCTCAGGAGTCTCGCCATT‑AATACTACGTATTAACATGTAAATTTACTTTTAAATACTTTAAAAAAATAAGACACTTTGGCCAACt > 2:3541677/1‑91 (MQ=37) tGCTCCCTCAGGAGTCTCGCCATT‑AATACTACGTATCAACATGTAATTTTACTTTTAAATACTTTAAAAAAATAAGACACTTTGGCCAACt < 2:683431/91‑1 (MQ=255) gCTCCCTCAGGAGTCTCGCCATT‑AATACTACGTATTAACATGTAATTTTACTTTTAAATACTTTAAAAAAATAAGACACTTTGGCCAACtt < 1:2281180/91‑1 (MQ=39) cTCCCTCAGGAGTCTCGCCATT‑AATACTACGTATTAACATGTAATTTTACTTTTAAATACTTTAAAAAAATAAGACACTTTGGCCAACTTa < 1:672802/91‑1 (MQ=39) cTCCCTCAGGAGTCTCGCCATT‑AATACTACGTATTAACATGTAATTTTACTTTTAAATACTTTAAAAAAATAAGACACTTTGGCCAACTTa < 2:1679567/91‑1 (MQ=39) tCCCTCAGGAGTCTCGCCATT‑AATACTACGTATTAACATGTAATTTTACTTTTAAATACTTTAAAAAAATAAGACACTTTGGCCAACTTaa > 2:1804264/1‑91 (MQ=40) cccTCAGGAGTCTCGCCATT‑AATACTACGTATTAACATGTAATTTTACTTTTAAATACTTTAAAAAAATAAGACACTTTGGCCAACTTAAg < 1:2137800/91‑1 (MQ=255) ccTCAGGAGTCTCGCCATT‑AATACTACGTATTAACATGTAATTTTACTTTTAAATACTTTAAAAAAATAAGACACTTTGGCCAACTTAAGc > 2:3858021/1‑91 (MQ=255) ccTCAGGAGTCTCGCCATT‑AATACTACGTATTAACATGTAATTTTACTTTTAAATACTTTAAAAAAATAAGACACTTTGGCCAACTTAAGc < 1:2087506/91‑1 (MQ=255) ccTCAGGAGTCTCGCCATT‑AATACTACGTATTAACACGTAATTTTACTTTTAAATACTTTAAAAAAATAAGACACTTTGGCCAACTTAAGc > 2:1088165/1‑91 (MQ=255) cTCAGGAGTCTCGCCATT‑AATACTACGTATTAACATGTAATTTTACTTTTAAATACTTTAAAAAAATAAGACACTTTGGCCAACTTAAGcc < 1:314177/91‑1 (MQ=255) cTCAGGAGTCTCGCCATT‑AATACTACGTATTAACATGTAATTTTACTTTTAAATACTTTAAAAAAATAAGACACTTTGGCCAACTTAAGcc > 2:3431128/1‑91 (MQ=255) cTCAGGAGTCTCGCCATT‑AATACTACCTATTAACATGTAATTTTACTTTTAAATACTTTAAAAAAATAAGACACTTTGGCCAACTTAAGcc > 2:2241683/1‑91 (MQ=255) cAGGAGTCTCGCCATT‑AATACTACGTATTAACATGTAATTTTACTTTTAAATACTTTAAAAAAATAAGACACTTTGGCCAACTTAAGCCAg < 2:2589914/91‑1 (MQ=255) aGGAGTCTCGCCATT‑AATACTACGTATTAACATGTAATTTTACTTTTAAATACTTTAAAAAAATAAGACACTTTGGCCAACTTAAGCCAgg > 1:182629/1‑91 (MQ=255) aGGAGTCTCGCCATT‑AATACTACGTATTAACATGTAATTTTACTTTTAAATACTTTAAAAAAATAAGACACTTTGGCCAACTTAAGCCAgg < 2:835294/91‑1 (MQ=255) ggAGTCACGCCATT‑AATACTACGTATTAACATGTAATTCTACTTTTACATACTTTAAAAAAATAAGACACTTTGGCAAACTTAAGCCAGGa > 2:771508/1‑91 (MQ=14) gAGTCTCGCCATT‑AATACTACGTATTAACATGTAATTTTACTTTTAAATACTTTAAAAAAATAAGACACTTTGGCCAACTTAAGCCAGGAt < 2:304063/91‑1 (MQ=255) gAGTCTCGCCATT‑AATACTACGTATTAACATGTAATTTTACTTTTAAATACTTTAAAAAAATAAGACACTTTGGCCAACTTAAGCCAGGAt < 1:3484525/91‑1 (MQ=255) gTCTCGCCATT‑AATACTACGTATTAACATGTAATTTTACTTTTAAATACTTTAAAAAAATACGACACTTTGGCCACCTTAAGCCAGGATAc > 1:515379/1‑91 (MQ=255) gTCTCGCCATT‑AATACTACGTATTAACATGTAATTTTACTTTTAAATACTTTAAAAAAATAAGACACTTTGGCCAACTTAAGCCAGGATAc > 2:1206257/1‑91 (MQ=255) ctcGCCATT‑AATACTACGTATTAACATGTAATTTTACTTTTCAATCCTTTAAAAAAATAAGACACTTTGGCCAACTTAAGCCAGGATACaa > 2:2850536/1‑91 (MQ=255) tcGCCATT‑AATACTACGTATTAACATGTAATTTTACTTTTAAATACTTTAAAAAAATAAGACACTTTGGCCAACTTAAGCCAGGATACAAt < 2:3206489/91‑1 (MQ=255) tcGCCATT‑AATACTACGTATTAACATGTAATTTTACTTTTAAATACTTTAAAAAAATAAGACACTTTGGCCAACTTAAGCCAGGATACAAt < 2:2646397/91‑1 (MQ=255) tcGCCATT‑AATACTACGTATTAACATGTAATTTTACTTTTAAATACTTTAAAAAAATAAGACACTTTGGCCAACTTAAGCCAGGATACAAt < 1:1484428/91‑1 (MQ=255) | CCCAACCGGCACATTGTTGTAAGCTGACTATATGTCAGCTTCTGTGTTGGGGCCCCTGTCTTCGACTGGCACTGCTCCCTCAGGAGTCTCGCCATT‑AATACTACGTATTAACATGTAATTTTACTTTTAAATACTTTAAAAAAATAAGACACTTTGGCCAACTTAAGCCAGGATACAATTT > USA300TCH1516_ALE/2478419‑2478599 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |