BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	= 1822873	144 (0.710)	15 (0.080)	8/142	NT	9.6%	intergenic (+194/+52)	USA300HOU_RS09070/ackA	Putative universal stress protein/Acetate kinase
*	?	USA300TCH1516_ALE	= 1822899	154 (0.850)	15 (0.080)	8/142	NT	9.6%	intergenic (+220/+26)	USA300HOU_RS09070/ackA	Putative universal stress protein/Acetate kinase

Only 100 of 211 total aligned reads displayed.

CTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTGTTGGAATAA  >  USA300TCH1516_ALE/1822809‑1822989

cTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGgaga                                                                                            <  1:3280475/91‑1 (MQ=255)

cTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGgaga                                                                                            >  2:1032990/1‑91 (MQ=255)

     aGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGAtagac                                                                                       <  2:1296486‑M2/91‑6 (MQ=255)

     aGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGAtagac                                                                                       <  1:1518478‑M2/91‑6 (MQ=255)

      gATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGAtagacg                                                                                      >  2:185139‑M2/1‑85 (MQ=255)

      gATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGAtagacg                                                                                      >  2:1624411‑M2/1‑85 (MQ=255)

      gATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGAtagacg                                                                                      >  2:2916099‑M2/1‑85 (MQ=255)

      gATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGAtagacg                                                                                      >  1:911889‑M2/1‑85 (MQ=255)

       atatTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGAtagacgc                                                                                     >  2:3043131‑M2/1‑84 (MQ=255)

         atTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGAtagacgctt                                                                                   >  1:2875485‑M2/1‑82 (MQ=255)

           tCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTaa                                                                                 >  1:3678931/1‑91 (MQ=255)

            cGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAat                                                                                >  1:33889/1‑91 (MQ=255)

               gAAAAGAGACATTACACTAGTTCATTTTCAAACAATACAAAAAGCGTCTGCCTCCTACATATAATTGTAGCGGAGATAGACGCTTAAtatt                                                                             <  2:3006926/91‑1 (MQ=255)

               gAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAAtatt                                                                             <  2:1271095/91‑1 (MQ=255)

                aaaaGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAAtattt                                                                            >  1:1058758/1‑91 (MQ=255)

                aaaaGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAAtattt                                                                            >  2:3300555/1‑91 (MQ=255)

                aaaaGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAAtattt                                                                            >  1:1122564/1‑91 (MQ=255)

                  aaGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAAtatttat                                                                          >  1:2178371/1‑91 (MQ=255)

                   agagACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAAtatttatt                                                                         <  1:52843/91‑1 (MQ=255)

                   agagACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAAtatttatt                                                                         <  1:1121011/91‑1 (MQ=255)

                    gagaCATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATatttattt                                                                        <  1:1260071/91‑1 (MQ=255)

                     agaCATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATAtttattta                                                                       <  2:3746382/91‑1 (MQ=255)

                      gaCATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTaa                                                                      >  1:2148669/1‑91 (MQ=255)

                        cATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTaaaa                                                                    <  2:3168891/91‑1 (MQ=255)

                        cATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTaaaa                                                                    <  1:3103319/91‑1 (MQ=255)

                          ttACACTCGTTAATTTTCAACCAATACAAAAAGCGTCTACCTCCTCCACAGAGTTGTAGCGAACATAGTCGCTTAAAATTTATTTAAAAat                                                                  <  2:476648/91‑1 (MQ=255)

                           tACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAatt                                                                 >  2:2297704/1‑91 (MQ=255)

                            acacTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAatta                                                                >  2:3580169/1‑91 (MQ=255)

                              acTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAattatt                                                              <  2:2278389/91‑1 (MQ=255)

                               cTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTAttt                                                             <  1:2058441/91‑1 (MQ=255)

                                tAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTAtttt                                                            >  1:3875092/1‑91 (MQ=255)

                                  gTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTaa                                                          >  2:2600977/1‑91 (MQ=255)

                                  gTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTaa                                                          >  1:2334520/1‑91 (MQ=255)

                                  gTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTaa                                                          >  1:1399702/1‑91 (MQ=255)

                                  gTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTaa                                                          >  1:1431759/1‑91 (MQ=255)

                                     aaTTTTCAAACAATGCAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAacc                                                       >  1:1237696/1‑91 (MQ=255)

                                     aaTTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAacc                                                       <  1:1642478/91‑1 (MQ=255)

                                     aaTTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAacc                                                       <  1:1277477/91‑1 (MQ=255)

                                     aaTTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAacc                                                       <  1:1332454/91‑1 (MQ=255)

                                     aaTTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAacc                                                       >  1:3704441/1‑91 (MQ=255)

                                      aTTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAacca                                                      >  2:2061440/1‑91 (MQ=255)

                                       ttttCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAaccac                                                     >  2:51365/1‑91 (MQ=255)

                                       ttttCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAaccac                                                     <  2:2049179/91‑1 (MQ=255)

                                       ttttCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAAAATTTATTTAAAAATGATTTTAAaccac                                                     <  1:654794/91‑1 (MQ=255)

                                        tttCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAaccacc                                                    <  2:3900706/91‑1 (MQ=255)

                                        tttCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAaccacc                                                    >  1:1904052/1‑91 (MQ=255)

                                         ttCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCg                                                   >  2:458237/1‑91 (MQ=255)

                                          tCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGa                                                  <  1:850173/91‑1 (MQ=255)

                                           cAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGaa                                                 >  2:266054/1‑91 (MQ=255)

                                           cAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTCTAAACCACCGaa                                                 >  2:1311638/1‑91 (MQ=255)

                                            aaaCAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAAt                                                >  2:775583/1‑91 (MQ=255)

                                              aCAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGAtagacgctttttgtattgtttgaaaattaactagtgtaatgtctct                                              <  1:2618230‑M2/91‑47 (MQ=255)

                                               cAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTc                                             <  1:3147718/91‑1 (MQ=255)

                                                 aTACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCAt                                           >  2:598163/1‑91 (MQ=255)

                                                 aTACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCAt                                           <  1:2680930/91‑1 (MQ=255)

                                                  tACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATa                                          <  1:3262922/91‑1 (MQ=255)

                                                   aCAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATaa                                         <  1:1584014/91‑1 (MQ=255)

                                                     aaaaaGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACa                                       >  1:1343094/1‑91 (MQ=255)

                                                     aaaaaGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACa                                       >  1:3302647/1‑91 (MQ=255)

                                                       aaaGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATc                                     >  2:1106281/1‑91 (MQ=255)

                                                        aaGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCa                                    >  1:1155507/1‑91 (MQ=255)

                                                           cGTCTACCTCCTACATATAATTGTAGCGGAGAtagacgctttttgtattgtttgaaaattaactagtgtaatgtctcttttcacgaatatc                                 <  1:2238105‑M2/91‑60 (MQ=255)

                                                           cGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTACTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACgg                                 >  2:3474807/1‑91 (MQ=255)

                                                             tCTACCTCCTACATATAATTGTAGCGGAGAtagacgctttttgtattgtttgaaaattaactagtgtaatgtctcttttcacgaatatctt                               <  2:3803302‑M2/91‑62 (MQ=255)

                                                              cTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCa                              >  1:2895962/1‑91 (MQ=255)

                                                              cTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCa                              >  2:1931118/1‑91 (MQ=255)

                                                              cTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCa                              >  1:3464797/1‑91 (MQ=255)

                                                                 cctcctACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATc                           >  1:799976/1‑91 (MQ=255)

                                                                   tcctACATATAATTGTAGCGGAGAtagacgctttttgtattgtttgaaaattaactagtgtaatgtctcttttcacgaatatcttaaagaa                         <  2:485362‑M2/91‑68 (MQ=255)

                                                                   tcctACATATAATTGTAGCGGAGAtagacgctttttgtattgtttgaaaattaactagtgtaatgtctcttttcacgaatatcttaaagaa                         <  2:3100982‑M2/91‑68 (MQ=255)

                                                                    cctACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATa                        >  2:3862818/1‑91 (MQ=255)

                                                                     ctACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATAc                       >  1:272494/1‑91 (MQ=255)

                                                                      tACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACt                      <  2:731920/91‑1 (MQ=255)

                                                                       aCATATAAATGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACtt                     <  1:2962164/91‑1 (MQ=255)

                                                                        cATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGGATGTCATAACATCACGGGCAATCATACttt                    <  1:727738/91‑1 (MQ=255)

                                                                          tataATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTttct                  >  1:2768733/1‑91 (MQ=255)

                                                                          tataATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATAATACTttct                  >  1:3790360/1‑91 (MQ=255)

                                                                           ataATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATGCTttctt                 <  1:681266/91‑1 (MQ=255)

                                                                           ataATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTttctt                 <  2:1985236/91‑1 (MQ=255)

                                                                           ataATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTttctt                 <  2:3765298/91‑1 (MQ=255)

                                                                           ataATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTttctt                 <  2:3764482/91‑1 (MQ=255)

                                                                           ataATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTttctt                 >  1:3225767/1‑91 (MQ=255)

                                                                           ataATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTttctt                 >  1:992389/1‑91 (MQ=255)

                                                                           ataATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTttctt                 >  2:2404302/1‑91 (MQ=255)

                                                                           ataATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTttctt                 <  2:1801973/91‑1 (MQ=255)

                                                                              aTTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCAt              <  1:1019071/91‑1 (MQ=255)

                                                                              aTTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCAt              >  1:2443332/1‑91 (MQ=255)

                                                                               ttGTAGCTGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATc             <  1:1961624/91‑1 (MQ=255)

                                                                                tGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCt            >  1:145927/1‑91 (MQ=255)

                                                                                 gTAGCGGAGATAGACGCTTAATATTTATTTAAAATTTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTg           <  2:3213241/91‑1 (MQ=255)

                                                                                 gTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTg           >  2:1722916/1‑91 (MQ=255)

                                                                                  tAGCGTAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTGt          <  2:2494448/91‑1 (MQ=255)

                                                                                    gCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTGTTg        <  2:2937427/91‑1 (MQ=255)

                                                                                     cGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTGTTgg       <  1:2593754/91‑1 (MQ=255)

                                                                                      ggAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTGTTGGa      >  1:204561/1‑91 (MQ=255)

                                                                                        agaTAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTGTTGGact    >  2:544043/1‑89 (MQ=255)

                                                                                        agaTAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTGTTGGAAt    <  2:2155042/91‑1 (MQ=255)

                                                                                         gaTAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTGTTGGAATa   <  2:780525/91‑1 (MQ=255)

                                                                                          aTAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTGTTGGAATaa  >  1:1592041/1‑91 (MQ=255)

                                                                                          aTAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTGTTGGAATaa  <  2:3414376/91‑1 (MQ=255)

CTTTAAGATATTCGTGAAAAGAGACATTACACTAGTTAATTTTCAAACAATACAAAAAGCGTCTACCTCCTACATATAATTGTAGCGGAGATAGACGCTTAATATTTATTTAAAAATTATTTTAAACCACCGAATGTCATAACATCACGGGCAATCATACTTTCTTCATCTGTTGGAATAA  >  USA300TCH1516_ALE/1822809‑1822989

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.