BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	USA300TCH1516_ALE	82395 =	176 (0.860)	9 (0.050)	5/152	NT	5.3%	coding (500/957 nt)	nikB_1	Nickel transport system permease protein NikB
*	?	USA300TCH1516_ALE	82432 =	152 (0.790)	9 (0.050)	5/152	NT	5.3%	coding (537/957 nt)	nikB_1	Nickel transport system permease protein NikB

Only 100 of 202 total aligned reads displayed.

TTTATTCATTTATTATTTAGGCGTACGTTGGCAATTGTTACCATTTGTAGGTAGTGATTCATGGCAACACTTTGTGCTGCCAATCTTCACAATTGTTGTTATAGAAGGGTGTCATATCTTATTGATGACAGCACATCTGATTACACAAACGTTAGATCAAGATGCGTATCAACTGGCGCAG  >  USA300TCH1516_ALE/82342‑82522

tttATTCATTTATTATTTAGGCGTACGTTGGCAATTGTTACCATTTGTAGGTAGTGATTCATGGCAACACTTTGTGCTGCCAATCTTcaca                                                                                            >  1:1516837/1‑91 (MQ=255)

tttATTCATTTATTATTTAGGCGTACGTTGGCAATTGTTACCATTTGTAGGTAGTGATTCATGGCAACACTTTGTGCTGCCAATCTTcaca                                                                                            >  2:1563820/1‑91 (MQ=255)

  tATTCATTTATTATTTAGGCGTACGTTGGCAATTGTTACCATTTGTAGGTAGTGATTCATGGCAACACTTTGTGCTGCCAATCTTCACAAt                                                                                          <  1:2244480/91‑1 (MQ=255)

   aTTCATTTATTATTTAGGCGTACGTTGGCAATTGTTACCATTTGTAGGTAGTGATTCATGGCAACACTTTGTGCTGCCAATCTTCACAAtt                                                                                         <  1:2095538/91‑1 (MQ=255)

      cATTTATTATTTAGGCGTACGTTGGCAATTGTTACCATTTGTAGGTAGTGATTCATGGCAACACTTTGTGCTGCCAATCTTCACAAttgtt                                                                                      <  2:2526642/91‑1 (MQ=255)

          tattatTTAGGCGTACGTTGGCAATTGTTACCATTTGTAGGTAGTGATTCATGGCAACACTTTGTGCTGCCAATCTTCACAATTGTTGTta                                                                                  <  1:107629/91‑1 (MQ=255)

          tattatTTAGGCGTACGTTGGCAATTGTTACCATTTGTAGGTAGTGATTCATGGCAACACTTTGTGCTGCCAATCTTCACAATTGTTGTta                                                                                  <  1:3593906/91‑1 (MQ=255)

             tattTAGGCGTACGTTGGCAATTGTTACCATTTGTAGGTAGTGATTCATGGCAACACTTTGTGCTGCCAATCTTCACAATTGTTGTTATAg                                                                               >  1:1009741/1‑91 (MQ=255)

             tattTAGGCGTACGTTGGCAATTGTTACCATTTGTAGGTAGTGATTCATGGCAACACTTTGAGCTGCCAATCTTCACAATTGTTGTTATAg                                                                               >  1:2186581/1‑91 (MQ=255)

              gtcatcaataagatatgacacccttctataacaacaattGTGAAGATTGGCAACACTTTGTGCTGCCAATCTTCACAATTGTTGTTATAGa                                                                              >  1:3317121‑M1/40‑91 (MQ=255)

              attTAGGCGTACGTTGGCAATTGTTACCATTTGTAGGTAGTGAGTGATGGCAACACTTTGTGCTGCCAATCTTCACAATTGTGGTTagagg                                                                              >  2:1359652/1‑90 (MQ=255)

               tttAGGCGTACGTTGGCAATTGTTACCATTTGTAGGTAGTGATTCATGGCAACACTTTGTGCTGCCAATCTTCACAATTGTTGTTATAGaa                                                                             <  2:694527/91‑1 (MQ=255)

                ttAGGCGTACGTTGGCAATTGTTACCATTTGTAGGTAGTGATTCATGGCAACACTTTGTGCTGCCAATCTTCACAATTGTTGTTATAGAAg                                                                            <  1:3664534/91‑1 (MQ=255)

                 tAGGCGTACGTTGGCAATTGTTACCATTTGTAGGTAGTGATTCATGGCAACACTTTGTGCTGCCAATCTTCACAATTGTTGTTATAGAAgg                                                                           <  1:392346/91‑1 (MQ=255)

                 tAGGCGTACGTTGGCAATTGTTACCATTTGTAGGTAGTGATTCATGGCAACACTTTGTGCTGCCAATCTTCACAATTGTTGTTATAGAAgg                                                                           >  1:209880/1‑91 (MQ=255)

                   ggCGTACGTTGGCAATTGTTACCATTTGTAGGTAGTGATTCATGGCAACACTTTGTGCTGCCAATCTTCACAATTGTTGTTATAGAAGGgt                                                                         >  2:1485059/1‑91 (MQ=255)

                   ggCGTACGTTGGCAATTGTTACCATTTGTAGATAGTGATTCATGGCAACACTTTGTGCTGCCAATCTACACAATTGTTGATATAGAAGGgt                                                                         >  2:3014894/1‑91 (MQ=255)

                    gCGTACGTTGGCAATTGTTACCATTTGTAGGTAGTGATTCATGGCAACACTTTGTGCTGCCAATCTTCACAATTGTTGTTATAGAAGGgtg                                                                        >  2:432088/1‑91 (MQ=255)

                    gCGTACGATGGCAATTGTTACCATTTGTAGGTAGTGATTCATGGCAACACTTTGTGCTGCCAATCTTCACAATTGTTGTTATAGAAGGgtg                                                                        <  1:1959294/91‑1 (MQ=255)

                        aCGTTGGCAATTGTTACCATTTGTAGGTAGTGATTCATGGCAACACTTTGTGCTGCCAATCTTCACAATTGTTGTTATAGAAGGGTGTCat                                                                    <  2:551451/91‑1 (MQ=255)

                         cGTTGGCAATTGTTACCATTTGTAGGTAGTGATTCATGGCAACACTTTGTGCTGCCAATCTTCACAATTGTTGTTATAGAAGGGTGTCata                                                                   <  2:3889688/91‑1 (MQ=255)

                          gTTGGCAATTGTTACCATTTGTAGGTAGTGATTCATGGCAACACTTTGTGCTGCCAATCTTCACAATTGTTGTTATAGAAGGGTGTCatat                                                                  <  1:643095/91‑1 (MQ=255)

                          gTTGGCAATTGTAACCATTTGTAGGTAGTGATTCATGGCAACACTTTGTGCTGCCAATCTTCACAATTGTTGTTATAGAAGGGTGTCatat                                                                  <  2:3397583/91‑1 (MQ=255)

                             ggCAATTGTTACCATTTGTAGGTAGTGATTCATGGCAACACTTTGTGCTGCCAATCTTCACAATTGTTGTTATAGAAGGGTGTCATATCtt                                                               >  2:2345433/1‑91 (MQ=255)

                              gCAATTGTTACCATTTGTAGGTAGTGATTCATGGCAACACTTTGTGCTGCCAATCTTCACAATTGTTGTTATAGAAGGGTGTCATATCTTa                                                              >  1:913659/1‑91 (MQ=255)

                                aaTTGTTACCATTTGTAGGTAGTGATTCATGGCAACACTTTGTGCTGCCAATCTTCACAATTGTTGTTATAGAAGGGTGTCATATCTTAtt                                                            >  2:2233227/1‑91 (MQ=255)

                                aaTTGTTACCATTTGTAGGTAGTGATTCATGGCAACACTTTGTGCTGCCAATCTTCACAATTGTTGTTATAGAAGGGTGTCATATCTTAtt                                                            <  2:1865229/91‑1 (MQ=255)

                                aaTTGTTACCATTTGTAGGTAGTGATTCATGGCAACACTTTGTGCTGCCAATCTTCACAATTGTTGTTATAGAAGGGTGTCATATCTTAtt                                                            <  2:3331959/91‑1 (MQ=255)

                                 aTTGTTACCATTTGTAGGTAGTGATTCATGGCAACACTTTGTGCTGCCAATCTTCACAATTGTTGTTATAGAAGGGTGTCATATCTTATtg                                                           <  2:3416355/91‑1 (MQ=255)

                                 aTTGTTACCATTTGTAGGTAGTGATTCATGGCAACACTTTGTGCTGCCAATCTTCACAATTGTTGTTATAGAAGGGTGTCATATCTTATtg                                                           <  1:468077/91‑1 (MQ=255)

                                 aTTGTTACCATTTGTAGGTAGTGATTCATGGCAACACTTTGTGCTGCCAATCTTCACAATTGTTGTTATAGAAGGGTGTCATATCTTATtg                                                           <  1:2689931/91‑1 (MQ=255)

                                     ttACCATTTGTAGGTAGTGATTCATGGCAACACTTTGTGCTGCCAATCTTCACAATTGTTGTTATAGAAGGGTGTCATATCTTATtgatga                                                       <  2:3562552/91‑1 (MQ=255)

                                      tACCATTTGTAGGTAGTGATTCATGGCAACACTTTGTGCTGCCAATCTTCACCATTGTTGTTATAGAAGGGTGTCATATCTTATTGATGAc                                                      >  1:1451968/1‑91 (MQ=255)

                                        ccATTTGTAGGTAGTGATTCATGGCAACACTTTGTGCTGCCAATCTTCACAATTGTTGTTATAGAAGGGTGTCATATCTTATTGATGACAg                                                    <  1:446307/91‑1 (MQ=255)

                                        ccATTTGTAGGTAGTGATTCATGGCAACACTTTGTGCTGCCAATCTTCACAATTGTTGTTATAGAAGGGTGTCATATCTTATTGATGACAg                                                    <  2:1397043/91‑1 (MQ=255)

                                         cATTTGTAGGTAGTGATTCATGGCAACACTTTGTGCTGCCAATCTTCACAATTGTTGTTATAGAAGGGTGTCATATCTTATTGATGACAGc                                                   >  1:2152738/1‑91 (MQ=255)

                                          aTTTGTAGGTAGTGATTCATGGCAACACTTTGTGCTGCCAATCTTCACAATTGTTGTTATAGAAGGGTGTCATATCTTATTGATGACAGca                                                  >  1:3400149/1‑91 (MQ=255)

                                           tttGTAGGTAGTGATTCATGGCAACACTTTGTGCTGCCAATCTTCACAATTGTTGTTATAGAAGGGTGTCATATCTTATTGATGACAGcac                                                 <  2:3494044/91‑1 (MQ=255)

                                            ttGTAGGTAGTGATTCATGGCAACACTTTGTGCTGCCAATCTTCACAATTGTTGTTATAGAAGGGTGTCATATCTTATTGATGACAGcaca                                                <  1:1400987/91‑1 (MQ=255)

                                            ttGTAGGTAGTGATTCATGGCAACACTTTGTGCTGCCAATCTTCACAATTGTTGTTATAGAAGGGTGTCATATCTTATTGATGACAGcaca                                                <  2:2785100/91‑1 (MQ=255)

                                             tGTAGGTAGTGATTCATGGCAACACTTTGTGCTGCCAATCTTCACAATTGTTGTTATAGAAGGGTGTCATATCTTATTGATGACAGCACAt                                               <  1:1319888/91‑1 (MQ=255)

                                             tGTAGGTAGTGATTCATGGCAACACTTTGTGCTGCCAATCTTCACAATTGTTGTTATAGAAGGGTGTCATATCTTATTGATGACAGCACAt                                               >  1:317810/1‑91 (MQ=255)

                                             tGTAGGTAGTGATTCATGGCAACACTTTGTGCTGCCAATCTTCACAATTGTTGTTATAGAAGGGTGTCATATCTTATTGATGACAGCACAt                                               <  1:2008824/91‑1 (MQ=255)

                                               taggtagTGATTCATGGCAACACTTTGTGCTGCCAATCTTCACAATTGTTGTTATAGAAGGGTGTCATATCTTATTGATGACAGCACATCt                                             <  2:3557885/91‑1 (MQ=255)

                                                aggtagTGATTCATGGCAACACTTTGTGCTGCCAATCTTCACAATTGTTGTTATAGAAGGGTGTCATATCTTATTGATGACAGCACATCTg                                            >  1:826049/1‑91 (MQ=255)

                                                aggtagTGATTCATGGCAACACTTTGTGCTGCCAATCTTCACAATTGTTGTTATAGAAGGGTGTCATATCTTATTGATGACAGCACATCTg                                            >  1:2655964/1‑91 (MQ=255)

                                                 ggtagTGATTCATGGCAACACTTTGTGCTGCCAATCTTCACAATTGTTGTTATAGAAGGGTGTCATATCTTATTGATGACAGCACATCTGa                                           >  1:2915512/1‑91 (MQ=255)

                                                 ggtagTGATTCATGGCAACACTTTGTGCTGCCAATCTTCACAATTGTTGTTATAGAAGGGTGTCATATCTTATTGATGACAGCACATCTGa                                           >  2:225976/1‑91 (MQ=255)

                                                 ggtagTGATTCATGGCAACACTTTGTGCTGCCAATCTTCACAATTGTTGTTATAGAAGGGTGTCATATCTTATTGATGACAGCACATCTGa                                           <  1:2481348/91‑1 (MQ=255)

                                                 ggtagTGATTCATGGCAACACTTTGTGCTGCCAATCTTCACAATTGTTGTTATAGAAGGGTGTCATATCTTATTGATGACAGCACATCTGa                                           >  1:2839679/1‑91 (MQ=255)

                                                     GTGATTCATGGCAACACTTTGTGCTGCCAATCTTCACAATTGTTGTTATAGAAGGGTGTCATATCTTATTGATGACAGCACATCTGATTac                                       <  2:418089‑M1/91‑1 (MQ=255)

                                                      tgaagattggcagcacaaagtgttgccatgaatcacAATTGTTGTTATAGAAGGGTGTCATATCTTATTGATGACAGCACATCTGATTaca                                      >  1:2296755‑M2/37‑91 (MQ=255)

                                                        aagattggcagcacaaagtgttgccatgaatcacAATTGTTGTTATAGAAGGGTGTCATATCTTATTGATGACAGCACATCTGATTAcaca                                    >  1:3237910‑M2/35‑91 (MQ=255)

                                                        ATTCATGGCAACACTTTGTGCTGCCAATCTTCACAATTGTTGTTATAGAAGGGTGTCATATCTTATTGATGACAGCACATCTGATTAcaca                                    >  2:1441660‑M1/1‑91 (MQ=255)

                                                         ttCATGGCAACACTTTGTGCTGCCAATCTTCACAATTGTTGTTATAGAAGGGTGTCATATCTTATTGATGACAGCACATCTGATTACACaa                                   >  1:170367/1‑91 (MQ=255)

                                                          tCATGGCAACACTTTGTGCTGCCAATCTTCACAATTGTTGTTATAGAAGGGTGTCATATCTTATTGATGACAGCACATCTGATTACACaaa                                  >  2:3191893/1‑91 (MQ=255)

                                                           cATGGCAACACTTTGTGCTGCCAATCTTCACAATTGTTGTTATAGAAGGGTGTCATATCTTATTGATGACAGCACATCTGATTACACAAAc                                 >  1:2821306/1‑91 (MQ=255)

                                                            aTGGCAACACTTTGTGCTGCCAATCTTCACAATTGTTGTTATAGAAGGGTGTCATATCTTATTGATGACAGCACATCTGATTACACAAACg                                >  2:1157250/1‑91 (MQ=255)

                                                            aTGGCAACACTTTGTGCTGCCAATCTTCACAATTGTTGTTATAGAAGGGTGTCATATCTTATTGATGACAGCACATCTGATTACACAAACg                                >  1:3230944/1‑91 (MQ=255)

                                                             tGGCAACACTTTGTGCTGCCAATCTTCACAATTGTTGTTATAGAAGGGTGTCATATCTTATTGATGACAGCACATCTGATTACACAAACGt                               >  2:3276732/1‑91 (MQ=255)

                                                               gCAACACTTTGTGCTGCCAATCTTCACAATTGTTGTTATAGAAGGGTGTCATATCTTATTGATGACAGCACATCTGATTACACAAACGTTa                             >  2:1030555/1‑91 (MQ=255)

                                                               gCAACACTTTGTGCTGCCAATCTTCACAATTGTTGTTATAGAAGGGTGTCATATCTTATTGATGACAGCACATCTGATTACACAAACGTTa                             <  2:2727120/91‑1 (MQ=255)

                                                                cAACACTTTGTGCTGCCAATCTTCACAATTGTTGTTATAGAAGGGTGTCATATCTTATTGATGACAGCACATCTGATTACACAAACGTTAg                            >  1:3482527/1‑91 (MQ=255)

                                                                 aaCACTTTGTGCTGCCAATCTTCACAATTGTTGTTATAGAAGGGTTTCATAGCTTATTGATGACAGCACATCTGATTACACAAACGTTAGa                           <  1:3739878/91‑1 (MQ=255)

                                                                 aaCACTTTGTGCTGCCAATCTTCACAATTGTTGTTATAGAAGGGTGTCATATCTTATTGATGACAGCACATCTGATTACACAAACGTTAGa                           <  2:457007/91‑1 (MQ=255)

                                                                 aaCACTTTGTGCTGCCAATCTTCACAATTGTTGTTATAGAAGGGTGTCATATCTTATTGATGACAGCACATCTGATTACACAAACGTTAGa                           <  2:2649426/91‑1 (MQ=255)

                                                                 aaCACTTTGTGCTGCCAATCTTCACAATTGTTGTTATAGAAGGGTGTCATATCTTATTGATGACAGCACATCTGATTACACAAACGTTAGa                           <  1:2618600/91‑1 (MQ=255)

                                                                   cacTTTGTGCTGCCAATCTTCACAATTGTTGTTATAGAAGGGTGTCATATCTTATTGATGACAGCACATCTGATTACACAAACGTTAGATc                         >  2:2353477/1‑91 (MQ=255)

                                                                   cacTTTGTGCTGCCAATCTTCACAATTGTTGTTATAGAAGGGTGTCATATCTTATTGATGACAGCACATCTGATTACACAAACGTTAGATc                         <  2:787836/91‑1 (MQ=255)

                                                                   cacTTTGTGCTGCCAATCTTCACAATTGTTGTTATAGAAGGGTGTCATATCTTATTGATGACAGCACATCTGATTACACAAACGTTAGATc                         >  1:2017119/1‑91 (MQ=255)

                                                                     cTTTGTGCTGCCAATCTTCACAATTGTTGTTATAGAAGGGTGTCATATCTTATTGATGACAGCACATCTGATTACACAAACGTTAGATCaa                       >  1:3038985/1‑91 (MQ=255)

                                                                     cTTTGTGCTGCCAATCTTCACAATTGTTGTTATAGAAGGGTGTCATATCTTATTGATGACAGCACATCTGATTACACAAACGTTAGATCaa                       >  2:1426657/1‑91 (MQ=255)

                                                                     cTTTGTGCTGCCAATCTTCACAATTGTTGTTATAGAAGGGTGTCATATCTTATTGATGACAGCACATCTGATTACACAAACGTTAGATCaa                       >  1:476760/1‑91 (MQ=255)

                                                                      tttGTGCTGCCAATCTTCACAATTGTTGTTATAGAAGGGTGTCATATCTTATTGATGACAGCACATCTGATTACACAAACGTTAGATCAAg                      <  1:364422/91‑1 (MQ=255)

                                                                      tttGTGCTGCCAATCTTCACAATTGTTGTTATAGAAGGGTGTCATATCTTATTGATGACAGCACATCTGATTACACAAACGTTAGATCAAg                      >  1:3736840/1‑91 (MQ=255)

                                                                        tgtgCTGCCAATCTTCACAATTGTTGTTATAGAAGGGTGTCATATCTTATTGATGACAGCACATCTGATTACACAAACGTTAGATCAAGAt                    >  1:3893628/1‑91 (MQ=255)

                                                                        tgtgCTGCCAATCTTCACAATTGTTGTTATAGAAGGGTGTCATATCTTATTGATGACAGCACATCTGATTACACAAACGTTAGATCAAGAt                    >  1:662889/1‑91 (MQ=255)

                                                                         gtgCTGCCAATCTTCACAATTGTTGTTATAGAAGGGTGTCATATCTTAGAGATGACAGCACATCTGATTACACAAACGTTAGATCAAGATg                   <  2:1593128/91‑1 (MQ=255)

                                                                          tgctgcCAATCTTCACAATTGTTGTTATAGAAGGGTGTCATATCTTATTGATGACAGCACATCTGATTACACAAACGTTAGATCAAGATGc                  >  1:2461253/1‑91 (MQ=255)

                                                                            ctgcCAATCTTCACAATTGTTGTTATAGAAGGGTGTCATATCTTATTGATGACAGCACATCTGATTACACAAACGTTAGATCAAGATGCGt                <  1:1562224/91‑1 (MQ=255)

                                                                            ctgcCAATCTTCACAATTGTTGTTATAGAAGGGTGTCATATCTTATTGATGACAGCACATCTGATTACACAAACGTTAGATCAAGATGCGt                >  1:2568771/1‑91 (MQ=255)

                                                                             tgcCAATCTTCACAATTGTTGTTATAGAAGGGTGTCATATCTTATTGATGACAGCACATCTGATTACACAAGCGTTAGATCAAGATGCGTa               <  2:3452091/91‑1 (MQ=255)

                                                                              gcCAATCTTCACAATTGTTGTTATAGAAGGGTGTCATATCTTATTGATGACAGCACATCTGATTACACAAACGTTAGATCAAGATGCGTAt              <  2:734697/91‑1 (MQ=255)

                                                                               ccAATCTTCACAATTGTTGTTATAGAAGGGTGTCATATCTTATTGATGACAGCACATCTGATTACACAAACGTTAGATCAAGATGCGTATc             >  1:1636401/1‑91 (MQ=255)

                                                                               ccAATCTTCACAATTGTTGTGATAGAGGGGTGTCATATCTTATGGATGACAGCACATCTGATTACACAAACGTTAGATCAAGATGCGTATc             <  2:1187499/91‑1 (MQ=255)

                                                                                cAATCTTCACAATTGTTGTTATAGAAGGGTGTCATATCTTATTGATGACAGCACATCTGATTACACAAACGTTAGATCAAGATGCGTATCa            <  1:1175477/91‑1 (MQ=255)

                                                                                 aaTCTTCACAATTGTTGTTATAGAAGGGTGTCATATCTTATTGATGACAGCACATCTGATTACACAAACGTTAGATCAAGATGCGTATCaa           <  2:381477/91‑1 (MQ=255)

                                                                                   tCTTCACAATTGTTGTTATAGAAGGGTGTCATATCTTATTGATGACAGCACATCTGATTACACAAACGTTAGATCAAGATGCGTATCAACt         <  1:2436047/91‑1 (MQ=255)

                                                                                     ttCACAATTGTTGTTATAGAAGGGTGTCATATCTTATTGATGACAGCACATCTGATTACACAAACGTTAGATCAAGATGCGTATCAACTgg       >  1:772644/1‑91 (MQ=255)

                                                                                     ttCACAATTGTTGTTATAGAAGGGTGTCATATCTTATTGATGACAGCACATCTGATTACACAAACGTTAGATCAAGATGCGTATCAACTgg       <  2:2594212/91‑1 (MQ=255)

                                                                                      tcacAATTGTTGTTATAGAAGGGTGTCATATCTTATTGATGACAGCACATCTGATTACACAAACGTTAGATCAAGATGCGTATCAActgtc      >  2:1185899‑M2/5‑89 (MQ=255)

                                                                                      tcacAATTGTTGTTATAGAAGGGTGTCATATCTTATTGATGACAGCACATCTGATTACACAAACGTTAGATCAAGATGCGTATAAACTGgc      >  2:3518071‑M2/5‑91 (MQ=255)

                                                                                      tcacAATCGTTGTTATAGAAGGGTGTCATATCTTATTGATGACAGCACATCTGATTACACAAACGTTAGATCAAGATGCGTATCAACTGgc      >  2:1314685‑M2/5‑91 (MQ=255)

                                                                                       cacAATTGTTGTTATAGAAGGGTGTCATATCTTATTGATGACAGCACATCTGATTACACAAACGTTAGATCAAGATGCGTATCAACTGgcg     <  2:2044461‑M2/88‑1 (MQ=255)

                                                                                        acAATTGTTGTTATAGAAGGGTGTCATATCTTATTGATGACAGCACATCTGATTACACAAACGTTAGATCAAGATGCGTATCAACTGgcgc    <  2:2473655‑M2/89‑1 (MQ=255)

                                                                                        acAATTGTTGTTATAGAAGGGTGTCATATCTTATTGATGACAGCACATCTGATTACACAAACGTTAGATCAAGATGCGTATCAACTGgcgc    >  1:3521195‑M2/3‑91 (MQ=255)

                                                                                        acAATTGTTGTTATAGAAGGGTGTCATATCTTATTGATGACAGCACATCTGATTACACAAACGTTAGATCAAGATGCGTATCAACTGgcgc    >  2:3146825‑M2/3‑91 (MQ=255)

                                                                                         cAATTGTTGTTATAGAAGGGTGTCATATCTTATTGATGACAGCACATCTGATTACACAAACGTTAGATCAAGATGCGTATCAACTGGCGCa   >  1:1741782‑M2/2‑91 (MQ=255)

                                                                                         cAATTGTTGTTATAGAAGGGTGTCATATCTTATTGATGACAGCACATCTGATTACACAAACGTTAGATCAAGATGCGTATCAACTGGCGCa   >  1:1220577‑M2/2‑91 (MQ=255)

                                                                                         cAATTGTTGTTATAGAAGGGTGTCATATCTTATTGATGACAGCACATCTGATTACACAAACGTTAGATCAAGATGCGTATCAACTGGCGCa   >  1:1741826‑M2/2‑91 (MQ=255)

TTTATTCATTTATTATTTAGGCGTACGTTGGCAATTGTTACCATTTGTAGGTAGTGATTCATGGCAACACTTTGTGCTGCCAATCTTCACAATTGTTGTTATAGAAGGGTGTCATATCTTATTGATGACAGCACATCTGATTACACAAACGTTAGATCAAGATGCGTATCAACTGGCGCAG  >  USA300TCH1516_ALE/82342‑82522

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.