| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 895,932 | G→A | 9.0% | intergenic (+131/+12) | metQ_2 → / ← Int‑Tn_1 | Methionine‑binding lipoprotein MetQ/Transposase from transposon Tn916 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 895,932 | 0 | G | A | 9.0% | 746.1 / 40.6 | 243 | intergenic (+131/+12) | metQ_2/Int‑Tn_1 | Methionine‑binding lipoprotein MetQ/Transposase from transposon Tn916 |
| Reads supporting (aligned to +/- strand): ref base G (90/131); new base A (8/14); total (98/145) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.21e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01 | |||||||||||
Only 100 of 251 total aligned reads displayed.
GGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTGAGAATAAATGGAAAGT > USA300TCH1516_ALE/895842‑896022 | ggggTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAg > 1:1182125/1‑91 (MQ=255)ggggTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAg > 1:3791019/1‑91 (MQ=255)ggggTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAg > 1:1953145/1‑91 (MQ=255) gggTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGa < 1:3938437/91‑1 (MQ=255) ggTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGAt < 1:98038/91‑1 (MQ=255) ggTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGAt < 1:1365271/91‑1 (MQ=255) ttatttatGTAGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTATAAACAAAAAAATACGCTCAGAttt < 2:1701977/91‑1 (MQ=255) tttttGTAGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAAATCTGAg < 2:641031/91‑1 (MQ=255) ttttGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAgc > 2:1336481/1‑91 (MQ=255) ttttGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAgc > 2:2668920/1‑91 (MQ=255) ttttGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAAATCTGAgc < 2:1869699/91‑1 (MQ=255) tttGTGTTATTTAAAATGAAAAATGGCATAAAAGGGGAAGTATATGAAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAgcg < 2:1211597/91‑1 (MQ=255) tttGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAGATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAgcg < 2:807110/91‑1 (MQ=255) tttGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAAATCTGAgcg < 2:91933/91‑1 (MQ=255) ttGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAgcgc < 1:261421/91‑1 (MQ=255) ttGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAAATCTGAgcgt < 2:3309290/91‑2 (MQ=255) tgtgGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATCTGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCa > 2:3837500/1‑91 (MQ=255) tgtgGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCa < 2:3231869/91‑1 (MQ=255) gtgGTATTGAAAATAAAAAAGGGCACAAAGGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAAAGCTGAgcgtat < 2:486609/91‑4 (MQ=255) gtgGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCAt < 1:3285252/91‑1 (MQ=255) gtgGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAAATCTGAGCGTAt < 2:1059860/91‑1 (MQ=255) gtgGTATTGAAAATAAAAAAAGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCAt < 2:2911325/91‑1 (MQ=255) aaagAAAATAACACAGGGCACAAAAGGGACAGTATATGCAAATCATCGAATATTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATcc < 2:1039980/88‑1 (MQ=255) aTTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATcc < 1:1441899/91‑1 (MQ=255) aaaaTAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGt < 2:2132698/91‑1 (MQ=255) aaaaaaaaaaGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGtt < 2:3343105/91‑1 (MQ=255) aaTAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGttt < 1:2465940/91‑1 (MQ=255) tAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTa < 2:2345026/91‑1 (MQ=255) tAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTa > 2:3112737/1‑91 (MQ=255) aaaaaGGGCACAAAAGGGCCAGTATATGCAAATTAACGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTAcc > 2:182229/1‑91 (MQ=255) aaaGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTg < 1:1657678/91‑1 (MQ=255) aaaGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTg < 1:2999167/91‑1 (MQ=255) aaGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGt > 1:3631421/1‑91 (MQ=255) aGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGtt < 2:1440996/91‑1 (MQ=255) ggCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCa < 1:126308/91‑1 (MQ=255) gCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCaa > 1:2047606/1‑91 (MQ=255) cacaAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAg < 1:2794079/91‑1 (MQ=255) cacaAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAg < 1:2298177/91‑1 (MQ=255) acaAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGt > 1:258467/1‑91 (MQ=255) acaAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGt < 2:2773758/91‑1 (MQ=255) caAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGtt > 1:708292/1‑91 (MQ=255) aaaGGGGCAGTACATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTg > 1:582125/1‑91 (MQ=255) aGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGtt < 2:1805523/91‑1 (MQ=255) ggggCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTtc > 2:2775465/1‑91 (MQ=255) ggggCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTtc < 1:1052684/91‑1 (MQ=255) ggggCAGTATATGCAAATTATCGAAGTATAAACAAAACAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTtc < 2:1177496/91‑1 (MQ=255) ggCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTtcat > 2:1891331/1‑91 (MQ=255) ggCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTtcat > 2:1951525/1‑91 (MQ=255) ggCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTtcat < 2:2388329/91‑1 (MQ=255) gCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTtcatc > 2:3849749/1‑91 (MQ=255) gCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTtcatc < 1:809007/91‑1 (MQ=255) cAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTtcatca < 1:715438/91‑1 (MQ=255) aGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTcatcat < 2:2237024/91‑1 (MQ=255) gTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCata > 1:2694226/1‑91 (MQ=255) atatGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATc < 1:420769/91‑1 (MQ=255) atatGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATc < 1:2543189/91‑1 (MQ=255) atGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCt > 1:2868879/1‑91 (MQ=255) atGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCt < 2:2542004/91‑1 (MQ=255) gCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTa < 1:684666/91‑1 (MQ=255) cAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTAt < 1:2838118/91‑1 (MQ=255) cAAATTATCGAATGATAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTAt < 2:571064/91‑1 (MQ=255) aaTTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATcc < 1:3528094/91‑1 (MQ=255) aTTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCa < 1:1881921/91‑1 (MQ=255) aTTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCa < 2:1294775/91‑1 (MQ=255) tCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTg < 2:3732424/91‑1 (MQ=255) tCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTg > 1:2316055/1‑91 (MQ=255) tCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTg < 2:960734/91‑1 (MQ=255) cGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGt > 2:3553199/1‑91 (MQ=255) cGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGt > 1:2806021/1‑91 (MQ=255) cGAATTTTAAAAAAAAACATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCAGTTCAAGTTTGTTAATAATATCCTTATCCATCTGt > 1:2130135/1‑91 (MQ=255) gAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGtt < 2:26253/91‑1 (MQ=255) aTTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCa < 2:3213557/91‑1 (MQ=255) aTTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCa < 1:3187078/91‑1 (MQ=255) aTTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCa > 1:3903414/1‑91 (MQ=255) aTTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCa < 2:2484598/91‑1 (MQ=255) ttttAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAg > 1:2357442/1‑91 (MQ=255) aCAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGt > 2:2272212/1‑91 (MQ=255) cAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTg < 2:1127838/91‑1 (MQ=255) aaaaaaaTACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTga < 2:363525/91‑1 (MQ=255) aaaaaaTACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTgag < 2:1371062/91‑1 (MQ=255) aaaaaaTACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTgag > 1:1902945/1‑91 (MQ=255) aaaaaaTACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTgag > 1:151082/1‑91 (MQ=255) aaaaTACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTGAGaa < 1:3747013/91‑1 (MQ=255) aaaTACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTGAGAAt < 2:444197/91‑1 (MQ=255) tACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTGAGAATaaa < 1:752490/91‑1 (MQ=255) gcGCTCAAATCTGAGCGTATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTGAGAATAAAt > 1:1776365/2‑91 (MQ=255) aCGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTGAGAATAAAt < 1:460210/91‑1 (MQ=255) cGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTGAGAATAAATg > 2:1613915/1‑91 (MQ=255) cGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTGAGAATAAATg < 1:3802784/91‑1 (MQ=255) cGCTCAAATCTGAGCGTATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTGAGAATAAATg > 1:1731692/1‑91 (MQ=255) gCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTGAGAATAAATgg < 1:3323235/91‑1 (MQ=255) gCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTGAGAATAAATgg < 2:1159968/91‑1 (MQ=255) gCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAATTTGTTCATCATATCCTTATCCATCGGTTCAGTAACGTGAGAATAAATgg > 2:3665164/1‑91 (MQ=255) gCTCAAATCTGAGCGTATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTGAGAATAAATgg > 1:1761222/1‑91 (MQ=255) gCTCAAATCTGAGCGTATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTGAGAATAAATgg > 1:2162487/1‑91 (MQ=255) cTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTGAGAATAAATggc > 2:202579/1‑90 (MQ=255) cTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTGAGAATAAATGGa > 2:2083269/1‑91 (MQ=255) cTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTGAGAATAAATGGa < 1:208672/91‑1 (MQ=255) aGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTGAGAATAAATGGAAAg < 1:1873607/91‑1 (MQ=255) gATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTGAGAATAAATGGAAAgt < 1:350768/91‑1 (MQ=255) | GGGGTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTGAGAATAAATGGAAAGT > USA300TCH1516_ALE/895842‑896022 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |