| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 895,935 | T→C | 9.3% | intergenic (+134/+9) | metQ_2 → / ← Int‑Tn_1 | Methionine‑binding lipoprotein MetQ/Transposase from transposon Tn916 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 895,935 | 0 | T | C | 9.3% | 687.7 / 48.3 | 236 | intergenic (+134/+9) | metQ_2/Int‑Tn_1 | Methionine‑binding lipoprotein MetQ/Transposase from transposon Tn916 |
| Reads supporting (aligned to +/- strand): ref base T (88/125); new base C (8/14); total (96/140) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.20e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.45e-01 | |||||||||||
Only 100 of 244 total aligned reads displayed.
GTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTGAGAATAAATGGAAAGTGTT > USA300TCH1516_ALE/895845‑896025 | gTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGAtt > 2:550067/1‑91 (MQ=255) ttatttatGTAGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTATAAACAAAAAAATACGCTCAGAttt < 2:1701977/91‑1 (MQ=255) ttttGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAgc > 2:1336481/1‑91 (MQ=255) ttttGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAAATCTGAgc < 2:1868514/91‑1 (MQ=255) tttGTGTTATTTAAAATGAAAAATGGCATAAAAGGGGAAGTATATGAAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAgcg < 2:1211597/91‑1 (MQ=255) tttGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAGATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAgcg < 2:807110/91‑1 (MQ=255) tttGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAgcg < 1:1950508/91‑1 (MQ=255) ttGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAgcgc < 1:261421/91‑1 (MQ=255) tgtgGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAAATCTGAgcgta < 1:2162220/91‑3 (MQ=255) gtgGTATTGAATAGAAAAAAGGGTACAAAAGGGGCAGTATATGCAAATTATCGAATTTTTAACAAAAAAATGCGCTCAAATCTGAgcgtat < 2:3017621/91‑4 (MQ=255) gtgGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCAt > 2:1607932/1‑91 (MQ=255) gtgGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCAt < 1:3285252/91‑1 (MQ=255) gtgGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAAATCTGAGCGTAt < 2:1059860/91‑1 (MQ=255) gTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTAt < 2:1370936/91‑1 (MQ=255) gTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTAt > 2:3322987/1‑91 (MQ=255) tATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATc < 2:1924442/91‑1 (MQ=255) aaagAAAATAACACAGGGCACAAAAGGGACAGTATATGCAAATCATCGAATATTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATcc < 2:1039980/88‑1 (MQ=255) tGAAAATAAAAAATGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCaa < 1:3962079/91‑1 (MQ=255) aaaaTAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGt < 2:2132698/91‑1 (MQ=255) aaaaaaaaaGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGttt < 2:2472562/88‑1 (MQ=255) aaTAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGttt < 1:2465940/91‑1 (MQ=255) aaaaaaGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTAc < 2:3842905/91‑1 (MQ=255) aaaaaGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTAcc > 1:1766995/1‑91 (MQ=255) aaaaaGGGCACAAAAGGGCCAGTATATGCAAATTAACGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTAcc > 2:182229/1‑91 (MQ=255) aaaaGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCt > 2:3219551/1‑91 (MQ=255) aaaGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTg < 1:1657678/91‑1 (MQ=255) aaaGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTg > 2:2764644/1‑91 (MQ=255) aaaGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTg < 1:2999167/91‑1 (MQ=255) aaGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGt > 1:3631421/1‑91 (MQ=255) aaGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGt > 1:985869/1‑91 (MQ=255) aaGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGt > 1:3839125/1‑91 (MQ=255) aaGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGt > 1:1413452/1‑91 (MQ=255) aGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGtt < 2:1440996/91‑1 (MQ=255) ggCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCa < 1:126308/91‑1 (MQ=255) gCACATAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCaa < 2:3202427/91‑1 (MQ=255) gCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCaa > 1:2047606/1‑91 (MQ=255) gCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCaa > 2:925335/1‑91 (MQ=255) cacaAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAg < 1:2298177/91‑1 (MQ=255) cacaAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAg > 2:2644515/1‑91 (MQ=255) acaAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGt < 2:2773884/91‑1 (MQ=255) acaAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGt < 1:1227185/91‑1 (MQ=255) acaAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGt > 1:258467/1‑91 (MQ=255) caAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGtt < 1:380043/91‑1 (MQ=255) caAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGtt > 1:708292/1‑91 (MQ=255) aaaGGGGCAGTACATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTg > 1:582125/1‑91 (MQ=255) ggggCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTtc < 1:1052684/91‑1 (MQ=255) ggggCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTtc < 2:3802511/91‑1 (MQ=255) ggggCAGTATATGCAAATTATCGAAGTATAAACAAAACAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTtc < 2:1177496/91‑1 (MQ=255) ggCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTtcat < 2:2388329/91‑1 (MQ=255) ggCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTtcat > 2:1891331/1‑91 (MQ=255) gCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTtcatc < 1:809007/91‑1 (MQ=255) cAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTtcatca < 1:715438/91‑1 (MQ=255) cAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTtcatca < 2:3723319/91‑1 (MQ=255) aGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTcatcat < 2:2237024/91‑1 (MQ=255) gTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCata > 1:2694226/1‑91 (MQ=255) atatGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATc < 1:2543189/91‑1 (MQ=255) atatGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATc < 1:420769/91‑1 (MQ=255) atGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCt > 1:2868879/1‑91 (MQ=255) atGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCt < 2:2542004/91‑1 (MQ=255) gCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTa < 1:684666/91‑1 (MQ=255) cAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTAt < 1:2837928/91‑1 (MQ=255) cAAATTATCGAATGATAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTAt < 2:571064/91‑1 (MQ=255) aaTTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATcc < 1:3528094/91‑1 (MQ=255) aaTTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATcc < 1:1869952/91‑1 (MQ=255) aTTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCa < 2:1294775/91‑1 (MQ=255) aTTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCa < 1:1881906/91‑1 (MQ=255) aTCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCt < 2:3260877/91‑1 (MQ=255) tCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTg < 2:356114/91‑1 (MQ=255) tCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTg > 1:2316055/1‑91 (MQ=255) tCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTg < 2:960734/91‑1 (MQ=255) cGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGt > 1:2806021/1‑91 (MQ=255) cGAATTTTAAAAAAAAACATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCAGTTCAAGTTTGTTAATAATATCCTTATCCATCTGt > 1:2130135/1‑91 (MQ=255) aTTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAGGTTTGTTCATCATATCCTTATCCATCTGTTCa < 2:3885448/91‑1 (MQ=255) ttttAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAg > 1:2357442/1‑91 (MQ=255) ttAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTa < 2:3375980/91‑1 (MQ=255) aaCAATAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACg < 2:3653651/91‑1 (MQ=255) aCAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGt > 2:2272212/1‑91 (MQ=255) cAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTg < 2:1127838/91‑1 (MQ=255) aaaaaaaTACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTga < 2:2814188/91‑1 (MQ=255) aaaaaaTACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTgag > 1:151082/1‑91 (MQ=255) aaaaaaTACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTgag > 1:1902606/1‑91 (MQ=255) aaaaTACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTGAGaa < 1:3747013/91‑1 (MQ=255) aaaTACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTGAGAAt < 2:444197/91‑1 (MQ=255) aaTACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTGAGAATa > 1:3200006/1‑91 (MQ=255) tACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTGAGAATaaa < 1:752490/91‑1 (MQ=255) aCGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTGAGAATAAAt < 1:460210/91‑1 (MQ=255) cGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTGAGAATAAATg < 2:677588/91‑1 (MQ=255) cGCTCAAATCTGAGCGTATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTGAGAATAAATg > 1:2788900/1‑91 (MQ=255) cGCTCAAATCTGAGCGTATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTGAGAATAAATg > 1:1731692/1‑91 (MQ=255) gcgcAGATTTGAGCGCATTATCCAAGTTTCACATGTTCAAGTTTGTTCATGATATCCTCGTCCACCTGTTCAGTAACGTGCGAAGAAACgg > 2:2585960/4‑91 (MQ=255) gCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTGAGAATAAATgg < 2:1159968/91‑1 (MQ=255) gCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTGAGAATAAATgg < 1:3323235/91‑1 (MQ=255) cTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTGAGAATAAATggc > 2:202579/1‑90 (MQ=255) cTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTGAGAATAAATGGa > 2:2083269/1‑91 (MQ=255) cTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTGAGAATAAATGGa < 1:208672/91‑1 (MQ=255) aGATTTGAGCGCATTATCCAAGTTTTACCTGATCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTGAGAATAAATGGAAAg < 2:1721969/91‑1 (MQ=255) gATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTGAGAATAAATGGAAAgt < 1:350768/91‑1 (MQ=255) aTTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTGAGAATAAATGGAAAgtg < 1:1748439/91‑1 (MQ=255) aTTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTGAGAATAAATGGAAAgtg < 1:2242627/91‑1 (MQ=255) tttGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTGAGAATAAATGGAAAgtgt < 1:1791956/91‑1 (MQ=255) | GTTATTTTTGTGGTATTGAAAATAAAAAAGGGCACAAAAGGGGCAGTATATGCAAATTATCGAATTTTAAACAAAAAAATACGCTCAGATTTGAGCGCATTATCCAAGTTTTACCTGTTCAAGTTTGTTCATCATATCCTTATCCATCTGTTCAGTAACGTGAGAATAAATGGAAAGTGTT > USA300TCH1516_ALE/895845‑896025 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |