| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 9,719 | G→A | 22.7% | intergenic (+24/+63) | gyrA → / ← nnrD | DNA gyrase subunit A/ADP‑dependent (S)‑NAD(P)H‑hydrate dehydratase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 9,719 | 0 | G | A | 22.7% | 379.8 / 94.6 | 181 | intergenic (+24/+63) | gyrA/nnrD | DNA gyrase subunit A/ADP‑dependent (S)‑NAD(P)H‑hydrate dehydratase |
| Reads supporting (aligned to +/- strand): ref base G (67/72); new base A (19/22); total (87/94) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.61e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 185 total aligned reads displayed.
TGAAGTAAGACAAGATTTCATGGATCGTGTTGAAGAAGATATACAACAATCATCAGATGAAGAATAATAAAAAATAAGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTAATGCTTTACTATATTCAATGATTAGTAATGACTAACTTTCTAATTGTTTCATTGCGTA > USA300TCH1516_ALE/9629‑9808 | tGAAGTAAGACAAGATTTCATGGATCGTGTTGAAGAAGATATACAACAATCATCAGATGAAGAATAATAAAAAATAAGACTTCCCTATATg < 2:954044/91‑1 (MQ=255)tGAAGTAAGACAAGATTTCATGGATCGTGTTGAAGAAGATATACAACAATCATCAGATGAAGAATAATAAAAAATAAGACTTCCCTATATg < 2:1863726/91‑1 (MQ=255)tGAAGTAAGACAAGATTTCATGGATCGTGTTGAAGAAGATATACAACAATCATCAGATGAAGAATAATAAAAAATAAGACTTCCCTATATg < 2:105940/91‑1 (MQ=255) gAAGTAAGACAAGATTTCATGGATCGTGTTGAAGAAGATATACAACAATCATCAGATGAAGAATAATAAAAAATAAGACTTCCCTATATGt < 1:315108/91‑1 (MQ=255) aggTAAGACAAGATGTCATGGAGCGTGTTGAAGAAGAGATACAACAATCATCAGATGAAGAATAATGAAAAATAAGACTCCCCTACAtata < 2:1619734/89‑1 (MQ=37) aGTAAGACAAGATTTCATGGATCGTGTTGAAGAAGATATACAACAATCATCAGATGAAGAATAATAAAAAATAAGACTTCCCTATATGTAg > 1:3073721/1‑91 (MQ=255) aGTAAGACAAGATTTCATGGATCGTGTTGAAGAAGATATACAACAATCATCAGATGAAGAATAATAAAAAATAAGACTTCCCTATATGTAg < 1:1985254/91‑1 (MQ=255) gTAAGACAAGATTTCATGGATCGTGTTGAAGAAGATATACAACAATCATCAGATGAAGAATAATAAAAAATAAGACTCCCCTACATATAgg < 2:1822441/91‑1 (MQ=38) gTAAGACAAGATTTCATGGATCGTGTTGAAGAAGATATACAACAATCATCAGATGAAGAATAATAAAAAATAAGACTCCCCTACATATAgg < 1:252902/91‑1 (MQ=38) tAAGACAAGATTTCATGGATCGTGTTGAAGAAGATATACAACAATCATCAGATGAAGAATAATAAAAAATAAGACTTCCCTATATGTAggg > 1:771901/1‑91 (MQ=255) tAAGACAAGATTTCATGGATCGTGTTGAAGAAGATATACAACAATCATCAGATGAAGAATAATAAAAAATAAGACTCCCCTACATATAggg < 1:1739802/91‑1 (MQ=38) aaGAAAAGATTGCAAGGATCGTGTTGAAGAAGATATACAACAATCAAAAGATGAAAAAAAAAAAAAAATAAGACTTCCCTATATGTAgggg < 2:2671438/91‑1 (MQ=255) aGACAAGATTTCATGGATCGTGTTGAAGAAGATATACAACAATCATCAGATGAAGAATAATAAAAAATAAGACTTCCCTATATGTAGGGGa < 1:1006918/91‑1 (MQ=255) aGACAAGATTTCATGGATCGTGTTGAAGAAGATATACAACAATCATCAGATGAAGAATAATAAAAAATAAGACTCCCCTACATATAgggaa < 1:1624675/91‑3 (MQ=38) gACAAGATTTCATGGATCGTGTTGAAGAAGATATACAACAATCATCAGATGAAGAATAATAAAAAATAAGACTCCCCTACATATAgggaag < 1:1208696/91‑4 (MQ=37) gACAAGAGTTCATGGATCGTGTTGAAGAAGATATACAACAATCATCATATGAAGAATAATAAAAAATAAGACTCCCCTACATATAGGGAAg < 2:1489241/91‑1 (MQ=37) aCAAGATTTCATGGATCGTGTTGAAGAAGATATACAACAATCATCAGATGAAGAATAATAAAAAATAAGACTTCCCTATATGTAGGGGAGt < 1:1873555/91‑1 (MQ=255) aCAAGATTTCATGGATCGTGTTGAAGAAGATATACAACAATCATCAGATGAAGAATAATAAAAAATAAGACTTCCCTATATGTAGGGGAGt < 1:2102853/91‑1 (MQ=255) cAAGATTTCATGGATCGTGTTGAAGAAGATATACAACAATCATCAGATGAAGAATAATAAAAAATAAGACTTCCCTATATGTAGGGGAGTc < 1:1072254/91‑1 (MQ=255) cAAGATTTCATGGATCGTGTTGAAGAAGATATACAACAATCATCAGATGAAGAATAATAAAAAATAAGACTTCCCTATATGTAGGGGAGTc > 2:2368005/1‑91 (MQ=255) aaGATTTCATGGATCGTGTTGAAGAAGATATACAACAATCATCAGATGAAGAATAATAAAAAATAAGACTCCCCTACATATAGGGAAGTCt < 1:2436253/91‑1 (MQ=37) aGATTTCATGGATCGTGTTGAAGAAGATATACAACAATCATCAGATGAAGAATAATAAAAAATAAGACTTCCCTATATGTAGGGGAGTCtt > 1:2899765/1‑91 (MQ=255) gATTTCATGGATCGTGTTGAAGAAGATATACAACAATCATCAGATGAAGAATAATAAAAAATAAGACTCCCCTACATATAGGGAAGTCTTa < 1:3052676/91‑1 (MQ=25) gATTTCATGGATCGTGTTGAAGAAGATATACAACAATCATCAGATGAAGAATAATAAAAAATAAGACTCCCCTACATATAGGGAAGTCTTa < 2:2983056/91‑1 (MQ=25) tCATGGATCGTGTTGAAGAAGATATACAACAATCATCAGATGAAGAATAATAAAAAATAAGACTTCCCTATATGTAGGGGAGTCTTA‑tttt > 2:3376266/1‑91 (MQ=255) tGGATCGTGTTGAAGAAGATATACAACAATCATCAGATGAAGAATAATAAAAAATAAGACTTCCCTATCTGTAGGGGAGTCTTA‑TTTTTAt > 2:2603028/1‑91 (MQ=255) tCGTGTTGAAGAAGATATACAACAATCATCAGATGAAGAATAATAAAAAATAAGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTa > 2:1552696/1‑91 (MQ=255) cGTGTTGAAGAAGATATACAACAATCATCAGATGAAGAATAATAAAAAATAAGACTTCCCTATATGTAGGGGCGTCTTA‑TTTTTATGCTAg > 1:1351794/1‑91 (MQ=255) cGTGTTGAAGAAGATATACAACAATCATCAGATGAAGAATAATAAAAAATAAGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAg > 2:3198558/1‑91 (MQ=255) gtTGAAGAAGATATACAACAATCATCAGATGAAGAATAATAAAAAATAAGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGaaa > 1:3761326/1‑91 (MQ=255) gtTGAAGAAGATATACAACAATCATCAGATGAAGAATAATAAAAAATAAGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGaaa > 1:3761316/1‑91 (MQ=255) gtTGAAGAAGATATACAACAATCATCAGATGAAGAATAATAAAAAATAAGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGaaa > 2:932103/1‑91 (MQ=255) tGAAGAAGATATACAACAATCATCAGATGAAGAATAATAAAAAATAAGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGt < 2:2033046/91‑1 (MQ=255) tGAAGAAGATATACAACAATCATCAGATGAAGAATAATAAAAAATAAGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGt < 1:3478649/91‑1 (MQ=255) tGAAGAAGATATACAACAATCATCAGATGAAGAATAATAAAAAATAAGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGt < 1:1146316/91‑1 (MQ=255) tGAAGAAGATATACAACAATCATCAGATGAAGAATAATAAAAAATAAGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGt < 2:2457787/91‑1 (MQ=255) ggaagaaGATATACAACAATCATCAGATGAAGAATAATAAAAAATAAGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGt < 2:129467/90‑1 (MQ=255) aagaagATATACATCAATCAGCAGATGAAGAATAATGAAAAATAAGACTTCCCTATATGTAGGGGAGGCTTA‑TTTTTATGCTAGAAAGTaa < 2:3573826/91‑1 (MQ=255) aagaagATATACAACAATCATCAGATGAAGAATAATAAAAAATAAGGCTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTaa < 1:695309/91‑1 (MQ=255) gaagaTATACAACAATCATCAGATGAAGAATAATAAAAAATAAGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGAAGGTAATg < 2:217709/91‑1 (MQ=255) gaagaTATACAACAATCATCAGATGAAGAATAATAAAAAATAAGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTAATg < 1:1717655/91‑1 (MQ=255) aagaTATACAACAATCATCAGATGAAGAATAATAAAAAATAAGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTAATGc < 2:2013022/91‑1 (MQ=255) agaTATACAACAATCATCAGATGAAGAATAATAAAAAATAAGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTAATGCt < 1:623642/91‑1 (MQ=255) agaTATACAACAATCATCAGATGAAGAATAATAAAAAATAAGACTTCCCTATACGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTAATGCt > 2:410667/1‑91 (MQ=255) gaTATACAACAATCATCAGATGAAGAATAATAAAAAATAAGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTAATGCtt < 2:1596619/91‑1 (MQ=255) gaTATACAACAATCATCAGATGAAGAATAATAAAAAATAAGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTAATGCtt < 2:1596880/91‑1 (MQ=255) gaTATACAACAATCATCAGATGAAGAATAATAAAAAATAAGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTAATGCtt > 1:1393359/1‑91 (MQ=255) atatACAACAATCATCAGATGAAGAATAATAAAAAATAAGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTAATGCttt > 1:2646715/1‑91 (MQ=255) atatACAACAATCATCAGATGAAGAATAATAAAAAATAAGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTAATGCttt > 1:727744/1‑91 (MQ=255) tataCAACAATCATCAGATGAAGAATAATAAAAAATAAGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTAATGCTTTa > 1:1823260/1‑91 (MQ=255) tataCAACAATCATCAGATGAAGAATAATAAAAAATAAGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTAATGCTTTa < 1:436442/91‑1 (MQ=255) ataCAACAATCATCAGATGAAGAATAATAAAAAATAAGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTAATGCTTTAc < 1:2792042/91‑1 (MQ=255) ataCAACAATCATCAGATGAAGAATAATAAAAAATAAGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTAATGCTTTAc > 2:1150101/1‑91 (MQ=255) ataCAACAATCATCAGATGAAGAATAATAAAAAATAAGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTAATGCTTTAc > 2:3947671/1‑91 (MQ=255) caacaaTCATCAGATGAAGAATAATAAAAAATAAGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTAATGCTTTACtat > 2:2257589/1‑91 (MQ=255) aacaaTCATCAGATGAAGAATAATAAAAAATAAGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTAATGCTTTACtata < 2:200955/91‑1 (MQ=255) aacaaTCATCAGATGAAGAATAATAAAAAATAAGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTAATGCTTTACtata < 2:1278337/91‑1 (MQ=255) aacaaTCATCAGATGAAGAATAATAAAAAATAAGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTAATGCTTTACtata > 1:347435/1‑91 (MQ=255) acaaTCATCAGATGAAGAATAATAAAAAATAAGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTAATGCTTTACTatat < 2:2956858/91‑1 (MQ=255) acaaTCATCAGATGAAGAATAATAAAAAATAAGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTAATGCTTTACTatat < 2:1130249/91‑1 (MQ=255) caaTCATCAGATGAAGAATAATAAAAAATAAGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTAATGCTTTACTATAtt > 1:2014350/1‑91 (MQ=255) caaTCATCAGATGAAGAATAATAAAAAATAAGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTAATGCTTTACTATAtt > 1:3579476/1‑91 (MQ=255) caaTCATCAGATGAAGAATAATAAAAAATAAGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTAATGCTTTACTATAtt > 1:3313874/1‑91 (MQ=255) atcaGATGAAGAATAATAAAAAATAAGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTAATGCTTTACTATATTCAATg > 2:2154615/1‑91 (MQ=255) atcaGATGAAGAATAATAAAAAATAAGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTAATGCTTTACTATATTCAATg < 1:2215603/91‑1 (MQ=255) atcaGATGAAGAATAATAAAAAATAAGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTAATGCTTTACTATATTCAATg < 1:2138052/91‑1 (MQ=255) tcaGATGAAGAATAATAAAAAATAAGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGATAGTAATGCTTTACTATATTCAATGa > 1:3686255/1‑91 (MQ=255) tGAAGAATAATAGAAAATAAGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTAATGCTTTACTATATTCAATGATTAGt < 2:2218375/91‑1 (MQ=255) tGAAGAATAATAAAAAATAAGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTAATGCTTTACTATATTCAATGATTAGt < 2:3840596/91‑1 (MQ=255) aagaaTAATAAAAAATAAGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTAATGCTTTACTATATTCAATGATTAGTaa < 1:2241854/91‑1 (MQ=255) aataatAAAAAATAAGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTAATGCTTTACTATATTCAATGATTAGTAATGa < 1:598414/91‑1 (MQ=255) aataatAAAAAATAAGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTAATGCTTTACTATATTCAATGATTAGTAATGa < 1:1834260/91‑1 (MQ=255) aataatAAAAAATAAGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTAATGCTTTACTATATTCAATGATTAGTAATGa > 1:2325035/1‑91 (MQ=255) taataaAAAATAAGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTAATGCTTTACTATATTCAATGATTAGTAATGACt < 1:624699/91‑1 (MQ=255) taataaAAAATAAGAATTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTACTGCTTTACTATATTCAATGATTAGTAATGACt > 1:3373495/1‑91 (MQ=255) taaAAAATAAGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTAATGCTTTACTATATTCAATGATTAGTAATGACTAAc < 2:1699429/91‑1 (MQ=255) taaAAAATAAGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTAATGCTTTACTATATTCAATGATTAGTAATGACTAAc < 1:2811162/91‑1 (MQ=255) aaaaaaTAAGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTAATGCTTTACTATATTCAATGATTAGTAATGACTAACt > 1:502512/1‑91 (MQ=255) aaaaaTAAGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTAATGCTTTACTATATTCAATGATTAGTAATGACTAACtt < 2:3164592/91‑1 (MQ=255) aaaaTAAGACTTCCCTATATGTAGGGGAGTCTTA‑TTTCTATGCTAGAAAGTAATGCTTTACTATATTCAATGCTTAGTAATGACTAACttt > 2:900351/1‑91 (MQ=255) aaTAAGACTCCCCTACATATAGGGAAGTCTTATTTTTTATGCTAGAAAGTAATGCTTTACTATATTCAATGATTAGTAATTACTAACtttt > 1:1413826/1‑90 (MQ=21) aaGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTAATGCTTTACTATATTCAATGATTAGTAATGACTAACTTTCTAAt < 2:2356714/91‑1 (MQ=255) aaGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTAATGCTTTACTATATTCAATGATTAGTAATGACTAACTTTCTAAt < 1:318779/91‑1 (MQ=255) aaGACTCCCCTACATATAGGGAAGTCTTA‑TTTTTATGCTAGAAAGTAATGCTTTACTATATTCAATGATTAGTAATGACTAACTTTCTAAt > 2:2756654/1‑91 (MQ=37) aGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTAATGCTTTACTATATTCAATGATTAGTAATGACTAACTTTCTAAtt > 1:2279855/1‑91 (MQ=255) aGACTCGCCTACATATAGGGAAGGCTTA‑TTTTTATGCTAGTAAGTAATGCTTTACTATATTCTATGATTAGTAATGATTAAGTTTCTAAtt > 2:267844/1‑91 (MQ=25) aGACTCCCCTACATATAGGGAAGTCTTA‑TTTTTATGCTAGAAAGTAATGCTTTACTATATTCAATGATTAGTAATGACTAACTTTCTAAtt > 1:1854221/1‑91 (MQ=37) aGACTCCCCTACATATAGGGAAGTCTTA‑TTTTTATGCTAGAAAGTAATGCTTTACTATATTCAATGATTAGTAATGACTAACTTTCTAAtt > 1:2842613/1‑91 (MQ=37) gACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTAATGCTTTACTATATTCAATGATTAGTAATGACTAACTTTCTAATTg > 2:2071565/1‑91 (MQ=255) aCTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGAACGTAATGCTTTACTATATTCAATGATCAGTAATGACTAACTTTCTAATTGt > 2:3668800/1‑91 (MQ=255) cTTCCCTATATGTAGGGGCGTCTTA‑TTTTTATGCTAGAAAGTAATGCTTTACTATACTCAATGATTAGTAATGACTAACTTTCTAATTGtt > 2:2122332/1‑91 (MQ=255) ttCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTAATGCTTTACTATATTCAATGATTAGTAATGACTAACTTTCTAATTGttt < 1:3820514/91‑1 (MQ=255) tccccTACATATAGGGAAGTCTTA‑TTTTTATGCTAGAAAGTAATGCTTTACTATATTCAATGATTAGTAATGACTAACTTTCTAATTGttt > 2:2394189/3‑91 (MQ=38) tccccTACATATAGGGAAGTCTTA‑TTTTTATGCTAGAAAGTAATGCTTTACTATATTCAATGATTAGTAATGACTAACTTTCTAATTGttt > 1:826254/3‑91 (MQ=38) ccccTACATATAGGGAAGTCTTA‑TTTTTATGCTAGAAAGCAATGCTTTACTATACTCAATGATTAGTAATGACTAACTTTCTAATTGTTTc > 2:3114012/2‑91 (MQ=37) cccTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTAATGCTTTACTATATTCAATGATTAGTAATGACTAACTTTCTAATTGTTTCa > 2:676808/1‑91 (MQ=255) atatGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTAATGCTATACTATATTCAATGATTAGAAATGACTAACTTTCTAATTGTTTCATTGc < 2:3478531/91‑1 (MQ=255) tatGTAGGGGAGTCTTA‑TTTTTATGCTAGCAAGTAATGCTTTACTATATTCAATGATTCGTAATGACTACCCTTCTAATTGTTTCATTGCg > 2:567094/1‑91 (MQ=255) atGTAGGGGAGTCTTA‑TTTTTATGCGAGAAAGTAATGCTTTACTATATCCAATGATTAGTAATGACTAACTTTCTAATTGTTTCATTGCGt < 1:1289577/91‑1 (MQ=255) tGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTAATGCTTTACTCTATTCAATGATTAGTAATGACTAACTTTCTAATTGTTTCATTGCGTa > 2:130562/1‑91 (MQ=255) | TGAAGTAAGACAAGATTTCATGGATCGTGTTGAAGAAGATATACAACAATCATCAGATGAAGAATAATAAAAAATAAGACTTCCCTATATGTAGGGGAGTCTTA‑TTTTTATGCTAGAAAGTAATGCTTTACTATATTCAATGATTAGTAATGACTAACTTTCTAATTGTTTCATTGCGTA > USA300TCH1516_ALE/9629‑9808 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |