| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 1,042,789 | T→C | 14.8% | intergenic (+19/+70) | tagE_3 → / ← catD | Poly(glycerol‑phosphate) alpha‑glucosyltransferase/Putative oxidoreductase CatD |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 1,042,789 | 0 | T | C | 14.8% | 642.2 / 99.4 | 272 | intergenic (+19/+70) | tagE_3/catD | Poly(glycerol‑phosphate) alpha‑glucosyltransferase/Putative oxidoreductase CatD |
| Reads supporting (aligned to +/- strand): ref base T (98/132); new base C (13/27); total (111/161) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 2.96e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 3.28e-02 | |||||||||||
Only 100 of 276 total aligned reads displayed.
AGAAAACATTATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGCCATTT > USA300TCH1516_ALE/1042701‑1042879 | agaAAACATTATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTc < 2:139249/91‑1 (MQ=255) aaaCATTATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATg < 1:3260539/91‑1 (MQ=255) aaaCATTACAGAAAAATATTCAACGAAATCAATATTAGAAAAATGGTTAAATCTTTGCAATAGCTAAATGAAAAAATCCTAGGTATTCATg < 2:3436567/91‑1 (MQ=255) aaCATTATAAAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTACTCATGa < 2:1980322/91‑1 (MQ=255) aCATTATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAg > 2:2233920/1‑91 (MQ=255) cATTATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGt < 1:3670513/91‑1 (MQ=255) cATTATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTACTCATGaat < 2:3309970/91‑3 (MQ=255) aTTATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTa > 1:2343866/1‑91 (MQ=255) aTTATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTa > 1:1692625/1‑91 (MQ=255) ttATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTAc > 1:1085773/1‑91 (MQ=255) ttATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTAc < 1:1241876/91‑1 (MQ=255) ttATAGAAAAATATTCAACGGAAACAATATTAGAATAACGATTAAATCTTATCACTAGCTAAAAGAAAAAAACCTAGGTATTCCTGaagac > 2:2691097/1‑87 (MQ=255) tataGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTAcc < 1:205676/91‑1 (MQ=255) ataGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCt < 1:2493481/91‑1 (MQ=255) ataGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCt < 1:899247/91‑1 (MQ=255) ataGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCt > 1:3727720/1‑91 (MQ=255) ataGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCt < 1:2170175/91‑1 (MQ=255) ataGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCt < 1:629384/91‑1 (MQ=255) ataGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATAAGTACCt > 1:1958092/1‑91 (MQ=255) ataGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTACTCATGAATACCt < 1:399065/91‑1 (MQ=255) ataGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTACTCATGAATACCt < 2:1151831/91‑1 (MQ=255) ataGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTACTCATGAATACCt < 1:2898509/91‑1 (MQ=255) taGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTa > 1:3380789/1‑91 (MQ=255) taGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTACTCATGAATACCTa < 1:857336/91‑1 (MQ=255) taGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTACTCATGAATACCTa < 1:554261/91‑1 (MQ=255) taGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTACTCATGAATACCTa < 2:2832277/91‑1 (MQ=255) aGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAg < 1:2765682/91‑1 (MQ=255) aGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTACTCATGAATACCTAg < 1:501013/91‑1 (MQ=255) aGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTACTCATGAATACCTAg < 1:176992/91‑1 (MQ=255) aaaaaTATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGa < 2:228513/91‑1 (MQ=255) aaaTATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGAtt > 1:3085839/1‑91 (MQ=255) aaaTATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGAtt < 1:3308246/91‑1 (MQ=255) aaaTATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGAtt < 2:1550007/91‑1 (MQ=255) aaTATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGAttt > 1:1159743/1‑91 (MQ=255) atatTCGACGAAATCAATATTAAAAAAATGGTGAAAGCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGAtttt < 2:1262016/91‑1 (MQ=38) atTCAACGGAATCAATATTAGAAAAATGGTTAAGTCTTTTCAATAGCGAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTa < 2:1579521/91‑1 (MQ=255) ttCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTAc > 1:3841665/1‑91 (MQ=255) tCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACg > 1:1834894/1‑91 (MQ=255) aaCGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCa > 2:1771378/1‑91 (MQ=255) aCGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCAt < 2:1044375/91‑1 (MQ=255) aTCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATaa > 1:3583339/1‑91 (MQ=255) aTCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATaa > 1:3910800/1‑91 (MQ=255) cAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAAt > 2:3159908/1‑91 (MQ=255) cAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAAt > 1:1295020/1‑91 (MQ=255) aagatTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATa < 2:652687/88‑1 (MQ=255) aaTATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATa < 2:901310/91‑1 (MQ=255) atatTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATAc > 2:2115174/1‑91 (MQ=255) tatTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACa > 1:3262534/1‑91 (MQ=255) tatTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACa > 1:2951392/1‑91 (MQ=255) atTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACaa < 1:94149/91‑1 (MQ=255) ttAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACaaa < 1:3771046/91‑1 (MQ=255) tAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACaaaa < 1:801280/91‑1 (MQ=255) tAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACaaaa < 1:2659056/91‑1 (MQ=255) tAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGATATTCATGAGTACCTAGGTTTTTTACGGATGATAAATACaaaa < 2:2504556/91‑1 (MQ=255) aGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACaaaaa > 2:545798/1‑91 (MQ=255) aaaaTGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAag > 1:2775306/1‑91 (MQ=255) aaTGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGTATGATAAAAAAAAAAAAagag < 2:2386504/91‑1 (MQ=255) aaTGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAagag < 1:1006923/91‑1 (MQ=255) aaTGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAagag < 1:2275141/91‑1 (MQ=255) aTGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAagaga > 2:1646749/1‑91 (MQ=255) ggTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAgg < 1:1470190/91‑1 (MQ=255) ggTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAgg < 1:1363476/91‑1 (MQ=255) ggTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAgg < 2:2974533/91‑1 (MQ=255) gTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGa < 2:445240/91‑1 (MQ=255) gTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGa > 1:2713120/1‑91 (MQ=255) gTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGa > 1:996990/1‑91 (MQ=255) ttAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAAAGAGGAt > 1:1561834/1‑91 (MQ=255) aaaTCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTATACGCATGATAAATACAAAAAAAGAGAGGATAg > 2:56502/1‑91 (MQ=255) aaTCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGt > 2:1599158/1‑91 (MQ=255) aaTCTTTACAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGactat < 1:1978864/91‑5 (MQ=255) aTCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTc < 1:3647891/91‑1 (MQ=255) ttttCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCctc < 2:2551039/91‑1 (MQ=255) tCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCa < 1:3858668/91‑1 (MQ=255) cAATAGCTAAATGAAAAAATCCTAGGTATTCATGAATACCTAGGATTTTTACACATAAAAAAAAAAAAAAAAGAGAGGATAGTCCTCTCaa < 2:2129585/91‑1 (MQ=25) cAAAAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAAAAAAAAAAAAGAGAGGATAGTCCTCTCaa < 2:3507379/91‑1 (MQ=255) aaTAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCaaa < 1:833457/91‑1 (MQ=255) gCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAAt < 2:3242214/91‑1 (MQ=255) tAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAg > 1:2230534/1‑91 (MQ=255) aaaTGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGt < 2:1924935/91‑1 (MQ=255) aTGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTta < 1:3496781/91‑1 (MQ=255) aTGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTta < 1:695026/91‑1 (MQ=255) gAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTtaat < 1:3816084/91‑1 (MQ=255) gAAAAAATCATAGGAATTAATGAGTACCTAGGATTTTTACGCAAGAAAAAAACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTtaat < 2:82875/91‑1 (MQ=255) aaaaTCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATaaa > 1:1650721/1‑91 (MQ=255) aaaaTCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATaaa < 2:1185621/91‑1 (MQ=255) aaTCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAAt < 2:1108563/91‑1 (MQ=255) aTCCTAGGTAGTCATGAGTAGCTAGGAGTTTTACGAATGAAAAAAAAAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAAtt < 2:390053/91‑1 (MQ=255) ccTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGt > 1:214793/1‑91 (MQ=255) cTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTa > 1:336550/1‑91 (MQ=255) cTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTa < 1:2040561/91‑1 (MQ=255) cTAGGTACTCATGAATACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTa > 2:1452682/1‑91 (MQ=255) tAGGTATTCATGAGTACCTAGGATTTTTACGCATGATATATACAAAAAAAGAGAGGATAGTCCTCTCAAATAATAGTTAATAAAATTGTAg < 1:3442982/91‑1 (MQ=255) gggTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGc < 2:315590/90‑1 (MQ=255) aagTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGc < 2:1301807/89‑1 (MQ=255) aGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGc > 2:3699275/1‑91 (MQ=255) aGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAACAAAATTGTAGc > 2:3811366/1‑91 (MQ=255) aGGTATTCATGAGTACCTAAGATGTTTACGCATGATAAATACAAAAAGAGGGAGGAGAGTCCTCGCAAACAATATTTAATAAAATTGTAGc < 2:1016684/91‑1 (MQ=255) aGGTACTCATGAATACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGc > 1:2017817/1‑91 (MQ=255) ggTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGcc < 1:3024310/91‑1 (MQ=255) ttCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGCCAttt > 1:2994378/1‑91 (MQ=255) | AGAAAACATTATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGCCATTT > USA300TCH1516_ALE/1042701‑1042879 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |