| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 1,042,796 | G→A | 18.8% | intergenic (+26/+63) | tagE_3 → / ← catD | Poly(glycerol‑phosphate) alpha‑glucosyltransferase/Putative oxidoreductase CatD |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 1,042,796 | 0 | G | A | 18.8% | 631.4 / 126.8 | 286 | intergenic (+26/+63) | tagE_3/catD | Poly(glycerol‑phosphate) alpha‑glucosyltransferase/Putative oxidoreductase CatD |
| Reads supporting (aligned to +/- strand): ref base G (99/132); new base A (31/23); total (131/155) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.82e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.84e-01 | |||||||||||
Only 100 of 292 total aligned reads displayed.
ACATTATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGCCATTTCTTCCAG > USA300TCH1516_ALE/1042706‑1042886 | aCATTATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAg > 2:2233920/1‑91 (MQ=255) cATTATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGt < 1:3670513/91‑1 (MQ=255) cATTATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGt > 1:209388/1‑91 (MQ=255) aTTATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTa > 1:2343866/1‑91 (MQ=255) aTTATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTa > 1:1692625/1‑91 (MQ=255) ttATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTAc > 1:1085773/1‑91 (MQ=255) ttATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTAc < 1:1241876/91‑1 (MQ=255) ttATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTAc < 1:2244910/91‑1 (MQ=255) tataGCAAAATATTCAACGGAATCAAGATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTAcc < 2:3641861/91‑1 (MQ=255) tataGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTAcc > 1:3775027/1‑91 (MQ=255) ataGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCt < 1:899247/91‑1 (MQ=255) ataGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCt < 1:2493481/91‑1 (MQ=255) ataGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATAAGTACCt > 1:1958092/1‑91 (MQ=255) ataGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTACTCATGAATACCt < 2:2659290/91‑1 (MQ=255) ataGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTACTCATGAATACCt < 2:1151831/91‑1 (MQ=255) taGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTa > 1:3380789/1‑91 (MQ=255) taGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTACTCATGAATACCTa < 2:2126268/91‑1 (MQ=255) taGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTACTCATGAATACCTa < 1:2217538/91‑1 (MQ=255) taGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTACTCATGAATACCTa < 1:554261/91‑1 (MQ=255) taGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTACTCATGAATACCTa < 2:2832277/91‑1 (MQ=255) taGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTACTCATGAATACCTa < 1:857336/91‑1 (MQ=255) aaaaaTATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGa < 2:228513/91‑1 (MQ=255) aaaTATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGAtt < 2:1550007/91‑1 (MQ=255) aaaTATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGAtt < 1:1432284/91‑1 (MQ=255) aaTATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGAttt > 1:1159743/1‑91 (MQ=255) atatTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAAGCCTAGGTATTCATGAGTACCTAGGAtttt < 2:1262102/91‑1 (MQ=255) tatTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGAttttt < 1:724154/91‑1 (MQ=255) ttCCACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGCTTTTTAc > 2:3500275/1‑91 (MQ=255) ttCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTAc > 1:3049592/1‑91 (MQ=255) cAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGc > 1:665981/1‑91 (MQ=255) cAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGc > 2:1949170/1‑91 (MQ=255) aCGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCAt < 2:1044375/91‑1 (MQ=255) ggAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGa < 1:925528/91‑1 (MQ=255) gAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTATGCATGAt > 2:82937/1‑91 (MQ=255) aaTCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATa < 1:408850/91‑1 (MQ=255) aaTCAATATTAGAAAAATGGTTAAATCTTTGCAATAGCAAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATa < 2:1874918/91‑1 (MQ=255) aTCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATaa > 1:3583339/1‑91 (MQ=255) aTCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATaa > 1:3910800/1‑91 (MQ=255) tCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATaaa > 1:513235/1‑91 (MQ=255) cAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAAt > 1:1295020/1‑91 (MQ=255) cAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAAt > 1:2026241/1‑91 (MQ=255) aaTATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATa < 2:901310/91‑1 (MQ=255) atatTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATAc < 2:3380257/91‑1 (MQ=255) tatTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATAcc > 2:402027/1‑90 (MQ=255) tatTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACa > 1:3262182/1‑91 (MQ=255) tatTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACa > 1:2951392/1‑91 (MQ=255) atTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACaa > 1:3355268/1‑91 (MQ=255) atAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAAACCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAaaaaaaaa < 2:3211285/90‑1 (MQ=39) tAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACaaaa < 1:801346/91‑1 (MQ=255) tAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACaaaa < 1:2659056/91‑1 (MQ=255) aaaaTGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAag > 1:2775306/1‑91 (MQ=255) aaaaTGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAag > 1:2754011/1‑91 (MQ=255) aaaTGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAaga > 1:3108110/1‑91 (MQ=255) aaTGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGTATGATAAAAAAAAAAAAagag < 2:2386504/91‑1 (MQ=255) aaTGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAagag < 1:1006923/91‑1 (MQ=255) ggTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAgg < 2:2974533/91‑1 (MQ=255) ggTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAgg < 1:1363476/91‑1 (MQ=255) gTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGa > 1:1636329/1‑91 (MQ=255) ttAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGAt < 1:993343/91‑1 (MQ=255) ttAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAAAGAGGAt > 1:1561834/1‑91 (MQ=255) ttAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTAACTAGGATTTTTACGCATGAAAAAAAAAAAAAAAGAGAGGAt < 2:1638560/91‑1 (MQ=255) aaaTCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAg > 2:728326/1‑91 (MQ=255) aaTCTTTACAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGactat < 1:1978864/91‑5 (MQ=255) aTCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTc < 1:3647891/91‑1 (MQ=255) aTCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTc < 1:1817389/91‑1 (MQ=255) tCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTcc < 1:1873843/91‑1 (MQ=255) ttttCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCctc < 2:2551039/91‑1 (MQ=255) tCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCa < 1:3858668/91‑1 (MQ=255) cAATAGCTAAATGAAAAAATCCGAGGTATTCATGAGTGCCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGACTATCCtctctt < 2:1588381/91‑3 (MQ=255) gCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAAt < 2:3242214/91‑1 (MQ=255) gCTAAATGAAAAAATCCTAGGTATTCATGAGAACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAAt > 1:3273061/1‑91 (MQ=255) aaaaTGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAg < 2:1240120/90‑1 (MQ=255) aaaTGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGt < 1:2152680/91‑1 (MQ=255) aaTGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGtt > 1:2046599/1‑91 (MQ=255) aaTGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGtt > 1:3753239/1‑91 (MQ=255) aaTGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAAAACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGtt < 2:2003525/91‑1 (MQ=255) aTGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTta < 1:3496792/91‑1 (MQ=255) gAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTtaat < 2:593655/91‑1 (MQ=255) aaTCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAAt > 1:3839273/1‑91 (MQ=255) aaTCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAAt < 2:1108563/91‑1 (MQ=255) aTCCTAGGTATTCATGAGTACCGAGGATTTTTACGCATGAGAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAAtt < 2:390041/91‑1 (MQ=255) cTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTa > 1:336581/1‑91 (MQ=255) tAGGTATTCATGAGTACCTAGGATTTTTACGCATGATATATACAAAAAAAGAGAGGATAGTCCTCTCAAATAATAGTTAATAAAATTGTAg < 1:3442982/91‑1 (MQ=255) tAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCACTCAAACAATGGTTAATAAAATTGTAg > 2:547991/1‑91 (MQ=255) aGGTATTCATGAGTACCTAAGATGTTTACGCATGATAAATACAAAAAGAGGGAGGAGAGTCCTCGCAAACAATATTTAATAAAATTGTAGc < 2:1016684/91‑1 (MQ=255) aGGTAGTAATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGc < 2:315751/91‑1 (MQ=255) gTATTCATGAGTACCTGGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGCCa < 2:3787646/91‑1 (MQ=255) tactCATGAATACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGCCAt > 2:1075344/4‑91 (MQ=255) ttCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGCCAttt < 2:1387608/91‑1 (MQ=255) ttCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGCCAttt > 1:2994378/1‑91 (MQ=255) ttCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGCCAttt > 2:475995/1‑91 (MQ=255) ttCATGAGTACCTAGGATTTTTACGAATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAGTAAAATTGTAGCCAttt < 2:170189/91‑1 (MQ=255) ctCATGAATACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAGATTGTAGCCAttt > 1:3956405/2‑91 (MQ=255) ctCATGAATACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGCCAttt > 1:150960/2‑91 (MQ=255) cATGAATACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGCCATttct > 1:2679926/1‑91 (MQ=255) cATGAATACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGCCATttct > 1:2015200/1‑91 (MQ=255) aaagAGTACCTAGGATTTTTACGAATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGCCATttct < 2:1487814/88‑1 (MQ=255) aGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGCCATTTCTTCCa > 2:1284973/1‑91 (MQ=255) gTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGCCATTTCTTCCAg < 1:2276458/91‑1 (MQ=255) gTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGCCATTTCTTCCAg < 1:2856044/91‑1 (MQ=255) | ACATTATAGAAAAATATTCAACGGAATCAATATTAGAAAAATGGTTAAATCTTTTCAATAGCTAAATGAAAAAATCCTAGGTATTCATGAGTACCTAGGATTTTTACGCATGATAAATACAAAAAAAGAGAGGATAGTCCTCTCAAACAATAGTTAATAAAATTGTAGCCATTTCTTCCAG > USA300TCH1516_ALE/1042706‑1042886 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |