| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 1,055,119 | C→A | 5.2% | G355C (GGT→TGT) | patA_2 ← | Putative N‑acetyl‑LL‑diaminopimelate aminotransferase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 1,055,119 | 0 | C | A | 5.2% | 951.8 / 26.1 | 270 | G355C (GGT→TGT) | patA_2 | Putative N‑acetyl‑LL‑diaminopimelate aminotransferase |
| Reads supporting (aligned to +/- strand): ref base C (143/113); new base A (2/12); total (145/125) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.07e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.60e-01 | |||||||||||
Only 100 of 276 total aligned reads displayed.
ATTTAGTATTTAAATATTTAGCAAGTCTCTTCATACCTTCTTTTAAAACATCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTAAATGTGTTGATTCAAGTAAATCGACACAAAATTCGAAATCGTCATCGGTGATAT > USA300TCH1516_ALE/1055029‑1055208 | atttaGTATTTAAATATTTAGCAAGTCTCTTCATACCTTCTTTTAACACATCCATTCCCTCAGCCTAGGAAATCCTTACAAATCCTTTGcc > 2:1697089/1‑91 (MQ=255)atttaGTATTTAAATATTTAGCAAGTCTCTTCATACCTTCTTTTAAAACATCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTAcc < 2:3575418/91‑1 (MQ=255)atttaGTATTTAAATATTTAGCAAGTCTCTTCATACCTTCTTTTAAAACATACATTTCATAAGCATAGGAAATCCTTACAAATCCTTTAcc > 1:447605/1‑91 (MQ=255) tttaGTATTTAAATATTTAGCAAGTCTCTTCATACCTTCTTTTAAAACATCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCg > 2:1600122/1‑91 (MQ=255) taGTATTTAAATATTTAGCAAGTCTCTTCATACCTTCTTTTAAAACATCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCGaa > 1:3624170/1‑91 (MQ=255) taGTAATTAAATATTTAGCAAGTCTCTTCATACCTTCTTTTAAAACATCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCGaa < 2:3651871/91‑1 (MQ=255) tATTTAAATATTTAGCAAGTCTCTTCATACCTTCTTTTAAAACATCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCGAATTc < 2:2298820/91‑1 (MQ=255) tATTTAAATATTTAGCAAGTCTCTTCATACCTTCTTTTAAAACATCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCGAATTc < 1:1017211/91‑1 (MQ=255) tATTTAAATATTTAGCAAGTCTCTTCATACCTTCTTTTAAAACATCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCGAATTc > 1:2511469/1‑91 (MQ=255) tttAAATATTTAGCAAGTCTCTTCATACCTTCTTTTAAAACATCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCGAATTCTg > 2:1974776/1‑91 (MQ=255) ttAAATATTTAGCAAGTCTCTTCATACCTTCTTTTAAAACATCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACAGAATTcggt < 1:646510/91‑4 (MQ=255) tAAATATTTAGCAAGTCTCTTCATACCTTCTTTTAAAACATCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACAGAATTCGGTa < 1:1877923/91‑1 (MQ=255) aaaTATTTAGCAAGTCTCTTCATACCTTCTTTTAAAACATCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCGAATTCTGTaa > 1:403986/1‑91 (MQ=255) atatTTAGCAAGTCTCTTCATACCTTCTTTTAAAACATCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCGAATTCTGTAAAg < 2:1957679/91‑1 (MQ=255) atTTAGCAAGTCTCTTCATACCTTCTTTTAAAACATCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCGAATTCTGTAAAGGa < 2:2706706/91‑1 (MQ=255) tttAGCAAGTCTCTTCATACCTTCTTTTAAAACATCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCGAATTCTGTAAAGGAt > 2:1913532/1‑91 (MQ=255) tttAGCAAGTCTCTTCATACCTTCTTTTAAAACATCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCGAATTCTGTAAAGGAt < 1:243373/91‑1 (MQ=255) ttAGCAAGTCTCTTCATACCTTCTTTTAAAACATCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCGAATTCTGTAAAGGATg > 2:644224/1‑91 (MQ=255) ttAGCAAGTCTCTTCATACCTTCTTTTAAAACATCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCGAATTCTGTAAAGGATg > 1:792687/1‑91 (MQ=255) ttAGCAAGTCTCTTCATACCTTCTTTTAAAACATCCATTTCATAAGCATAGGAAAGCCTTACAAATCCTTTACCGAATTCTGTAAAGGATg < 2:2230883/91‑1 (MQ=255) tAGCAAGTCTCTTCATACCTTCTTTTAAAACATCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCGAATTCTGTAAAGGATGa < 1:3347097/91‑1 (MQ=255) cAAGTCTCTTCATACCTTCTTTTAAAACATCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGcc > 2:1579576/1‑91 (MQ=255) cAAGTCTCTTCATACCTTCTTTTAAAACATCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGcc > 1:1066431/1‑91 (MQ=255) aGTCTCTTCATACCTTCTTTTAAAACATCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTg > 2:139134/1‑91 (MQ=255) aGTCTCTTCATACCTTCTTTTAAAACATCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTg < 1:1668999/91‑1 (MQ=255) gTCTCTTCATACCTTCTTTTAAAACATCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTgg > 1:678304/1‑91 (MQ=255) tctcTTCATACCTTCTTTTAAAACATCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTGGa < 1:2949032/91‑1 (MQ=255) tctTCATACCTTCTTTTAAAACATCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAAc < 2:2564081/91‑1 (MQ=255) ttCATACCTTCTTTTAAAACATCCATTTCATAAGCATAGGAAGTCCTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGa < 2:484928/91‑1 (MQ=255) ttCATACCTTCTTTTAAAACATCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGa > 1:2177101/1‑91 (MQ=255) ttCATACCTTCTTTTAAAACATCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGa > 1:861276/1‑91 (MQ=255) ttCATACCTTCTTTTAAAACATCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGa > 1:2017657/1‑91 (MQ=255) tCATACCTTCTTTTAAAACATCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGAt > 2:1005474/1‑91 (MQ=255) cATACCTGCTTTTAAAACATCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGAtt < 1:1965966/91‑1 (MQ=255) aTACCTTCTTTTAAAACATCCATTTCATAAGCATAGGAAATCCTTACACATCCTATACCGAATTCTGTAAAGGATGAGCCTGGAACGAttt > 2:3915384/1‑90 (MQ=255) aTACCTTCTTTTAAAACATCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGATTg > 1:758965/1‑91 (MQ=255) tACCTTCTTTTAAAACATCCATTTCATAAGCATAGGAAATCCTTACAAATGCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGc < 2:31013/91‑1 (MQ=255) tACCTTCTTTTAAAACATCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGc < 2:2389802/91‑1 (MQ=255) tACCTTCTTTTAAAACATCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGc < 1:1289644/91‑1 (MQ=255) ccTTCTTTTAAAACATCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTa > 2:2804016/1‑91 (MQ=255) cttcttTTAAAACATCCATTTCATAAGCATAGGAAATCCTTACACATCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTaa > 2:755573/1‑91 (MQ=255) cttcttTTAAAACATCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTaa < 1:1367647/91‑1 (MQ=255) ttcttTTAAAACATCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTaaa > 1:2249241/1‑91 (MQ=255) tcttTTAAAACATCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTAAAt > 1:2775685/1‑91 (MQ=255) cttTTAAAACATCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTAAAtg > 1:568428/1‑91 (MQ=255) cttTTAAAACATCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTAAAtg < 2:1845139/91‑1 (MQ=255) tttAAAACATCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTAAAtgtg < 2:3747706/91‑1 (MQ=255) tttAAAACATCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCAAATTCTGTAAAGGATGAGCCTGGAACGATTGCTAAAtgtg < 2:125022/91‑1 (MQ=255) ttAAAACATCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTAAATgtgt < 2:3805457/91‑1 (MQ=255) tAAAACATCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTAAATGTGtt > 1:306495/1‑91 (MQ=255) tAAAACATCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTAAATGTGtt < 2:1657749/91‑1 (MQ=255) tAAAACATCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCGAACTCTGTAAAGGATGAGCCTGGAACGATCGCTAAATGTGtt > 2:3805732/1‑91 (MQ=255) tAAAACATCCATTTCATAAGCATAGGAAATCCTTACAAATCATTTACCGAATTCTGTAAAGGATGAGTCTGGAACGATTACTAAATGTGtt > 2:3011237/1‑91 (MQ=255) aaaaCATCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTAAATGTGTTg > 2:2617463/1‑91 (MQ=255) aaaCATCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTAAATGTGTTGa > 1:3519242/1‑91 (MQ=255) aCATCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTAAATGTGTTGAtt < 1:18543/91‑1 (MQ=255) aCATCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTAAATGTGTTGAtt > 2:1143606/1‑91 (MQ=255) aCATCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTAAATGTGTTGAtt > 2:3589588/1‑91 (MQ=255) cgtCCATTTCGTAAGCATAGGAAAGCGTTACAAATCGTTTACCGAATTCTGGAAAGGATGAGCCTGGAACGATTGCTAAATGTGTCGAttt < 2:1893339/89‑2 (MQ=255) cATCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTAAATGTGTTGATTc < 2:820202/91‑1 (MQ=255) cATCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTAAATGTGTTGATTc > 1:1259877/1‑91 (MQ=255) cATCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTAAATGTGTTGATTc > 1:2655487/1‑91 (MQ=255) aTCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTAAATGTGTTGATTCa > 2:1677791/1‑91 (MQ=255) tCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTAAATGTGTTGATTCaa > 1:151186/1‑91 (MQ=255) tCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTAAATGTGTTGATCCaa > 1:3556584/1‑91 (MQ=255) tCCATTTCATAAGCATAGGAAATCCGTACAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTAAATGTGTTGATTCaa < 2:3421261/91‑1 (MQ=255) ccATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTAAATGTGTTGATTCAAg < 1:326009/91‑1 (MQ=255) aTTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTAAATGTGTTGATTCAAGTa > 1:61087/1‑91 (MQ=255) aTTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTAAATGTGTTGATTCAAGTa > 1:1703081/1‑91 (MQ=255) tttCATAAGCATAGGAAATCCTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTAAATGTGTTGATTCAAGTaa > 2:383328/1‑91 (MQ=255) aTAAGCATAGGAAATCCTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTAAATGTGTTGATTCAAGTAAATCg > 2:1209798/1‑91 (MQ=255) aTAAGCATAGGAAATCCTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTAAATGTGTTGATTCAAGTAAATCg > 2:3304029/1‑91 (MQ=255) aaGCATAGGAAATCCTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTAAATGTGTTGATTCAAGTAAATCGac > 2:2724645/1‑91 (MQ=255) tAGGAAATCCTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTAAATGTGTTGATTCAAGTAAATCGACACaaa > 2:1353378/1‑91 (MQ=255) tAGGAAATCCTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTAAATGTGTTGATTCAAGTAAATCGACACaaa < 2:3352383/91‑1 (MQ=255) tAGGAAATCCTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTAAATGTGTTGATTCAAGTAAATCGACACaaa > 1:812578/1‑91 (MQ=255) aGGAAATCCTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTAAATGTGTTGATTCAAGTAAATCGACACaaaa < 2:1535934/91‑1 (MQ=255) ggAAATCCTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTAAATGTGTTGATTCAAGTAAATCGACACAAAAt < 2:3204736/91‑1 (MQ=255) tCCTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTAAATGTGTTGATTCAAGTAAATCGACACAAAATTCGaa > 2:1163481/1‑91 (MQ=255) ccTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTAAATGTGTTGATTCAAGTAAATCGACATAAAATTCGaaa > 2:2864337/1‑91 (MQ=255) ccTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTAAATGTGTTGATTCAAGTAAATCGACACAAAATTCGaaa > 1:2581551/1‑91 (MQ=255) cTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTAAATGTGTTGATTCAAGTAAATCGACACAAAATTCGAAAt > 1:3177447/1‑91 (MQ=255) ttACAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTAAATGTGTTGATTCAAGTAAATCGACACAAAATTCGAAATc > 2:2519169/1‑91 (MQ=255) tACAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTAAATGTGTTGATTCAAGTAAATCGACACAAAATTCGAAATCg > 1:1627159/1‑91 (MQ=255) tACAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTAAATGTGTTGATTCAAGTAAATCGACACAAAATTCGAAATCg > 1:3840346/1‑91 (MQ=255) aCAAATCCTTTACCGAATTCTGTAAAGGATGAGCATGGAACGATTGCTAAATGTGTTGATTCAAGTAAATCGACACAAAATTCGAAATCGt > 1:1554918/1‑91 (MQ=255) cAAGTCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTAGATGTGTTGATTCAAGTAAATCGACACAAATTTCGACATCGTc < 2:2630449/91‑1 (MQ=255) cAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTAAATGTGTTGATTCAAGTAAATCGACACAAAATTCGAAATCGTc > 1:2106512/1‑91 (MQ=255) cAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTAAATGTGTTGATTCAAGTAAATCGACACAAAATTCGAAATCGTc < 1:304409/91‑1 (MQ=255) aaaTCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTAAATGTGTTGATTCAAGTATATCGACACAAAATTCGAAATCGTCa > 1:3684535/1‑91 (MQ=255) aaTCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTAAATGTGTTGATTCAAGTAAATCGACACAAAATTCGAAATCGTCAt < 2:6180/91‑1 (MQ=255) tCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTAAATGTGTTGATTCAAGTAAATCGACACAAAATTCGAAATCGTCATCg > 1:3431599/1‑91 (MQ=255) ccTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTAAATGTGTTGATTCAAGTAAAGCGACACAAAATTCGAAATCGTCATCgg < 1:349293/91‑1 (MQ=255) cTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTAAATGTGTTGATTCAAGTAAATCGACACAAAATTCGAAATCGTCATCGGt > 1:2682520/1‑91 (MQ=255) cTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTAAATGTGTTGATTCAAGTAAATCGACACAAAATTCGAAATCGTCATCGGt < 1:2871953/91‑1 (MQ=255) ttACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTAAATGTGTTGATTCAAGTAAATCGACACAAAATTCGAAATCGTCATCGGTGa < 1:3861613/91‑1 (MQ=255) ttACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTAAATGTGTTGATTCAAGTAAATCGACACAAAATTCGAAATCGTCATCGGTGa > 1:513517/1‑91 (MQ=255) ttACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTAAATGTGTTGATTCAAGTAAATCGACACAAAATTCGAAATCGTCATCGGTGa > 1:1534043/1‑91 (MQ=255) ttACAGAATTCGGTAAAGGATGAGCCTGGAACGATTGCTAAATGTGTTGATTCAAGTAAATCGACACAAAATTCGAAATCGTCATCGGTGa > 1:1770783/1‑91 (MQ=255) tACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTAAATGTGTTGATTCAAGTAAATCGACACAAAATTCGAAATCGTCATCGGTGat < 1:377544/91‑1 (MQ=255) | ATTTAGTATTTAAATATTTAGCAAGTCTCTTCATACCTTCTTTTAAAACATCCATTTCATAAGCATAGGAAATCCTTACAAATCCTTTACCGAATTCTGTAAAGGATGAGCCTGGAACGATTGCTAAATGTGTTGATTCAAGTAAATCGACACAAAATTCGAAATCGTCATCGGTGATAT > USA300TCH1516_ALE/1055029‑1055208 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |