| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 1,218,730 | G→T | 11.9% | intergenic (+221/+42) | USA300HOU_RS06065 → / ← USA300HOU_RS06070 | hypothetical protein/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 1,218,730 | 0 | G | T | 11.9% | 673.4 / 56.4 | 208 | intergenic (+221/+42) | USA300HOU_RS06065/USA300HOU_RS06070 | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base G (88/94); new base T (8/17); total (96/112) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.39e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 213 total aligned reads displayed.
AACTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCATAC > USA300TCH1516_ALE/1218641‑1218820 | aaCTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGa < 2:3798108/91‑1 (MQ=255) cTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGact > 2:2974548/1‑91 (MQ=255) atgatgATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTActtt > 1:3001245/1‑91 (MQ=255) gatgatACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTActttct < 1:1200044/91‑1 (MQ=255) gatgatACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTActttct < 1:3944412/91‑1 (MQ=255) gatgatACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCA‑CAAAAGAAAGTAGTCctttctt < 2:2913815/91‑1 (MQ=25) atgatACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCA‑CAAAAGAAAGTAGTCctttctta < 1:798432/91‑2 (MQ=21) atgatACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCA‑CAAAAGAAAGTAGTCctttctta < 2:1249390/91‑2 (MQ=21) tgatACGTTATTTAAAAACACGATACTTCGTTTCAATGAGCGCATTAAATAATAAATAAACACCTCA‑CAAAAGAAAGTAGTCctttcttat < 2:2038579/91‑3 (MQ=21) gatACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCtt‑tt < 1:3486335/91‑1 (MQ=255) atACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCA‑CAAAAGAAAGTAGTCctttcttatgg < 2:1520314/91‑5 (MQ=21) tACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑Ttgt < 2:1649225/91‑1 (MQ=255) cGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGa < 1:2374706/91‑1 (MQ=255) ttATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAgg > 2:745898/1‑91 (MQ=255) ttATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAgg < 1:2609939/91‑1 (MQ=255) tATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCA‑CAAAAGAAAGTAGTCCTTTCTTATGGTGAGgt < 1:330213/91‑1 (MQ=17) tATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCA‑CAAAAGAAAGTAGTCCTTTCTTATGGTGAGgt < 2:2922554/91‑1 (MQ=17) aTTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGgtg < 2:2006080/91‑1 (MQ=255) ttAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGtt < 1:2209285/91‑1 (MQ=255) aaaCACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTAtt > 2:3409846/1‑91 (MQ=255) aaCACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTAttt > 1:3925925/1‑91 (MQ=255) aaCACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTAttt > 1:389622/1‑91 (MQ=255) acacGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGGGGTGTTTATTTg < 1:3054373/91‑1 (MQ=255) acacGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTg > 1:2651647/1‑91 (MQ=255) acacGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTg < 2:3654933/91‑1 (MQ=255) cacGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGt < 2:1184768/91‑1 (MQ=255) cacGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGt < 2:1558508/91‑1 (MQ=255) cacGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGt > 1:11082/1‑91 (MQ=255) acGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTc > 1:1895818/1‑91 (MQ=255) cGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCg > 1:642275/1‑91 (MQ=255) gATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGa > 2:2592315/1‑91 (MQ=255) aTACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGAc < 2:2909669/91‑1 (MQ=255) tACTTCGTTTCAATGAACGCATTAAATAATAAATACACACCTCACCATACGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACa > 2:3165268/1‑91 (MQ=255) tACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGCAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACa > 2:266419/1‑91 (MQ=255) tACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACa > 2:2798041/1‑91 (MQ=255) tACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TCGTGAGGTGTTTATTTGTCGACa > 2:395805/1‑91 (MQ=255) aCTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACaa > 1:1698586/1‑91 (MQ=255) cTTCGTTTCAATGAACGCATTAAATGATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAAc < 1:3681273/91‑1 (MQ=255) ttCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACt < 1:716904/91‑1 (MQ=255) tCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACtt < 2:2079422/91‑1 (MQ=255) tCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGAGAGGTGTTTATTTGTCGACAACtt > 2:1650773/1‑91 (MQ=255) cGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTg < 2:3580994/91‑1 (MQ=255) gTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGa > 1:577277/1‑91 (MQ=255) gTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGa > 1:2048889/1‑91 (MQ=255) ttCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGAtt < 2:2492768/91‑1 (MQ=255) ttCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGAtt > 1:1010180/1‑91 (MQ=255) tCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTa < 1:1831263/91‑1 (MQ=255) cAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTAt > 2:1783444/1‑91 (MQ=255) aTGAACGCATTAAATAATAAATAAACACCTCACCATAAGAATGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGa > 1:3423208/1‑91 (MQ=255) aTGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGa > 2:1836425/1‑91 (MQ=255) tGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGAt > 2:821556/1‑91 (MQ=255) gAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGAtt < 2:3851415/91‑1 (MQ=255) gAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGAtt < 2:3106492/91‑1 (MQ=255) gAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGAtt < 2:3839369/91‑1 (MQ=255) gAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGAtt < 2:1682575/91‑1 (MQ=255) aaCGCATTAAATAATAAATAAGCACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAAGTGTTTATTTGACGACAACTTGATTATGATTg < 2:483669/91‑1 (MQ=255) aCGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGt > 1:2504358/1‑91 (MQ=255) aCGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGt < 2:2728711/91‑1 (MQ=255) aCGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGt > 1:115873/1‑91 (MQ=255) cGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGtt < 1:3099512/91‑1 (MQ=255) cGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGtt < 2:1027553/91‑1 (MQ=255) cGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGtt < 1:3325662/91‑1 (MQ=255) cGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACGTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGtt < 1:2280618/91‑1 (MQ=255) cATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTc < 2:2033507/91‑1 (MQ=255) aTTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCa > 1:2757447/1‑91 (MQ=255) ttAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCAt > 1:3799129/1‑91 (MQ=255) aaataataaataaACACCTCACCATAAGAAAGGCCTACTTTCTT‑TTCTGAGGTGTTTATCTGTCGACAACTTGATTATGATTGTTTCAttt > 1:3157127/1‑91 (MQ=255) ataataaataaACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCAttttt > 1:1933328/1‑91 (MQ=255) ataataaataaACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCAttttt > 1:357499/1‑91 (MQ=255) taataaataaACTCCTCACCATGAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCAtttttt < 2:2131532/91‑1 (MQ=255) taataaataaACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCAtttttt < 1:1379458/91‑1 (MQ=255) ataaataaACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGa < 1:1612640/91‑1 (MQ=255) taaataaaCACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGaa < 2:2626018/91‑1 (MQ=255) aataaaCACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATa > 1:472804/1‑91 (MQ=255) ataaaCACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATaa < 1:2930751/91‑1 (MQ=255) taaaCACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTCTTTGAATacg > 2:3620574/1‑89 (MQ=255) aaCACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGtt > 1:46993/1‑91 (MQ=255) aaCACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGtt < 2:1963755/91‑1 (MQ=255) cacCTCA‑CAAAAGAAAGTAGTCCTTTCTTATGGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCa > 2:1581888/1‑91 (MQ=17) ccTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATa > 2:434273/1‑91 (MQ=255) ccTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATa < 2:1144837/91‑1 (MQ=255) cTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATaa > 1:1275346/1‑91 (MQ=255) cACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATc > 1:255728/1‑91 (MQ=255) ccATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAg > 1:3578972/1‑91 (MQ=255) ccATAAGAAAGGACTACTTTCTA‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCCTAATCAg > 2:2408818/1‑91 (MQ=255) caaaaGAAAGTAGTCCTTTCTTATGGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAg > 1:121043/4‑91 (MQ=21) cATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAgg > 1:2888643/1‑91 (MQ=255) tAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTTATTTTTTGAATAAGTTCATAATCAGgtg > 2:1040595/1‑91 (MQ=255) aaGAAAGTGCTACTTTCTT‑TTGTGAGGTTTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGgtgt < 2:938597/91‑1 (MQ=255) aaGAAAGTAGTCCTTTCTTATGGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGgtg > 2:3193226/1‑91 (MQ=21) aaGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGgtgt > 1:987422/1‑91 (MQ=255) aaGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGgtgt < 1:3371915/91‑1 (MQ=255) aGAAAGGACTACGTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTa > 1:3030287/1‑91 (MQ=255) gAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAg < 2:3733675/91‑1 (MQ=255) gAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAg > 2:107104/1‑91 (MQ=255) aaaGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGc > 2:3008547/1‑91 (MQ=255) aaaGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGc > 2:2380536/1‑91 (MQ=255) ggACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCATa > 2:51291/1‑91 (MQ=255) ggACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCATa > 1:3088054/1‑91 (MQ=255) gACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCATAc > 2:2708180/1‑91 (MQ=255) | AACTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TTGTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCATAC > USA300TCH1516_ALE/1218641‑1218820 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |