| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 1,218,732 | C→G | 11.9% | intergenic (+223/+40) | USA300HOU_RS06065 → / ← USA300HOU_RS06070 | hypothetical protein/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 1,218,732 | 0 | C | G | 11.9% | 662.0 / 59.7 | 202 | intergenic (+223/+40) | USA300HOU_RS06065/USA300HOU_RS06070 | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base C (89/88); new base G (8/16); total (97/105) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.33e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.67e-01 | |||||||||||
Only 100 of 224 total aligned reads displayed.
ACTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCATACAA > USA300TCH1516_ALE/1218642‑1218822 | cTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGact < 1:1333003/91‑1 (MQ=255) ttAAATGATGATACGCTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATCATAAATAAACACCTCACCATAAGAAAGGacta > 1:3368743/1‑91 (MQ=255) tAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGactac > 1:1841373/1‑91 (MQ=255) aaTGATGATACGCTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTActt > 1:3029352/1‑91 (MQ=255) atgatgATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTActtt > 1:3001245/1‑91 (MQ=255) tgatgaTACGTTATTTACAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTActttc < 1:3387426/91‑1 (MQ=255) tgatgaTACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTActttc < 1:2141057/91‑1 (MQ=255) gatgatACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTActttct < 1:1200044/91‑1 (MQ=255) gatgatACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCA‑CAAAAGAAAGTAGTCctttctt < 2:2913815/91‑1 (MQ=25) atgatACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTActttctt < 2:2978225/91‑1 (MQ=255) atgatACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCA‑CAAAAGAAAGTAGTCctttctta < 1:798432/91‑2 (MQ=21) atgatACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCA‑CAAAAGAAAGTAGTCctttctta < 2:1249390/91‑2 (MQ=21) tgatACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCA‑CAAAAGAAAGTAGTCctttcttat < 2:2036942/91‑3 (MQ=21) atACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCA‑CAAAAGAAAGTAGTCctttcttatgg < 2:1520314/91‑5 (MQ=21) tACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑Tt‑gt < 2:1649225/91‑1 (MQ=255) cGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGa < 1:2374706/91‑1 (MQ=255) ttATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAgg < 1:2609939/91‑1 (MQ=255) ttATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAgg > 2:745898/1‑91 (MQ=255) tATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCA‑CAAAAGAAAGTAGTCCTTTCTTATG‑GTGAGgt < 1:330213/91‑1 (MQ=17) tATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCA‑CAAAAGAAAGTAGTCCTTTCTTATG‑GTGAGgt < 2:2922554/91‑1 (MQ=17) aTTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGgtg > 1:3919822/1‑91 (MQ=255) tAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGttt < 1:2772467/91‑1 (MQ=255) aaaaCACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTAATTTCTT‑TT‑GTGAGGTGTTTAt > 2:3237558/1‑91 (MQ=255) aaaCACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTAtt > 2:3409846/1‑91 (MQ=255) aaCACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTAttt > 1:389622/1‑91 (MQ=255) acacGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTg > 1:2651647/1‑91 (MQ=255) acacGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCA‑CAAAAGAAAGTAGTCCTTTCTTATG‑GTGAGGTGTTTAttta < 1:3448576/91‑2 (MQ=11) acacGAGACTTCGTTTCAATGGGCGCATTAAATAATGAGTAAACGTCTCACCAGAAGAAAGGGCTACGTTCTT‑TT‑GTGAGGTGTTTATTTg < 2:3656257/91‑1 (MQ=255) cacGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGt < 2:1184768/91‑1 (MQ=255) cacGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGt < 2:1558508/91‑1 (MQ=255) cacGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGt > 1:11082/1‑91 (MQ=255) acGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTc > 1:1896132/1‑91 (MQ=255) cGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCg < 1:902956/91‑1 (MQ=255) cGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCg < 1:433252/91‑1 (MQ=255) cGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCg > 1:642275/1‑91 (MQ=255) gATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGa > 2:2592315/1‑91 (MQ=255) aTACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGAc < 2:2909669/91‑1 (MQ=255) tACTTCGTTTCAATGAACGCATTAAATAATAAATACACACCTCACCATACGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACa > 2:3165268/1‑91 (MQ=255) tACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGCAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACa > 2:266419/1‑91 (MQ=255) tACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TC‑GTGAGGTGTTTATTTGTCGACa > 2:395805/1‑91 (MQ=255) aCTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACaa > 1:1698586/1‑91 (MQ=255) cTTCGTTTCAATGAACGCATTAAATGATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAAc < 1:3681273/91‑1 (MQ=255) cGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTg < 2:3580994/91‑1 (MQ=255) gTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGa > 1:577277/1‑91 (MQ=255) ttCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGAtt > 1:1010180/1‑91 (MQ=255) aaTGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATg > 1:3939846/1‑91 (MQ=255) aTGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGa > 2:1836424/1‑91 (MQ=255) aTGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGa < 2:1674367/91‑1 (MQ=255) tGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGAt > 2:821556/1‑91 (MQ=255) gAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGAtt < 2:3839369/91‑1 (MQ=255) gAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGAtt < 2:3106492/91‑1 (MQ=255) gAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGAtt < 2:3851415/91‑1 (MQ=255) aaCGCATTAAATAATAAATAAGCACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAAGTGTTTATTTGACGACAACTTGATTATGATTg < 2:483669/91‑1 (MQ=255) aCGCATTAAATAATAAATAAACACCTCGCCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGt < 2:2729102/91‑1 (MQ=255) aCGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGt > 1:2514477/1‑91 (MQ=255) aCGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGt > 1:115873/1‑91 (MQ=255) cGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGtt < 2:2004021/91‑1 (MQ=255) cGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGtt < 1:1570050/91‑1 (MQ=255) cGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGtt < 1:3099512/91‑1 (MQ=255) cGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACGTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGtt < 1:2280618/91‑1 (MQ=255) aTTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCa > 2:1837502/1‑91 (MQ=255) aaataataaataaACACCTCACCATAAGAAAGGCCTACTTTCTT‑TT‑CTGAGGTGTTTATCTGTCGACAACTTGATTATGATTGTTTCAttt > 1:3157127/1‑91 (MQ=255) aataataaataaACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCAtttt > 2:1025471/1‑91 (MQ=255) ataataaataaACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCAttttt > 1:357499/1‑91 (MQ=255) taataaataaACTCCTCACCATGAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCAtttttt < 2:2131532/91‑1 (MQ=255) aataaataaACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTg < 2:2073925/91‑1 (MQ=255) taaataaaCACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGaa < 2:2626018/91‑1 (MQ=255) aataaaCACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATa > 1:472804/1‑91 (MQ=255) ataaaCACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATaa < 1:2930751/91‑1 (MQ=255) taaaCACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTCTTTGAATacg > 2:3620574/1‑89 (MQ=255) aaCACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGtt < 1:701587/91‑1 (MQ=255) cacCTCA‑CAAAAGAAAGTAGTCCTTTCTTATG‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCa > 2:1581888/1‑91 (MQ=17) ccTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATa < 2:1144837/91‑1 (MQ=255) ccTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATa > 2:434273/1‑91 (MQ=255) cTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGTTTTTGTTCATat > 2:3737702/1‑90 (MQ=255) tCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAAt < 1:1632972/91‑1 (MQ=255) cACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATc < 1:2456342/91‑1 (MQ=255) aCCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCa > 2:2489810/1‑91 (MQ=255) ccATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAg > 1:2022192/1‑91 (MQ=255) ccATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAg > 1:3578972/1‑91 (MQ=255) ccATAAGAAAGGACTACTTTCTA‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCCTAATCAg > 2:2408818/1‑91 (MQ=255) acaaaaGAAAGTAGTCCTTTCTT‑ATGGTGAGGTGTTTATTTGTTGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCa > 2:2012257/5‑91 (MQ=18) caaaaGAAAGTAGTCCTTTCTTATG‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAg > 1:121043/4‑91 (MQ=21) cATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAgg < 2:2808431/91‑1 (MQ=255) tAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTTATTTTTTGAATAAGTTCATAATCAGgtg > 2:1040595/1‑91 (MQ=255) aaGAAAGTGCTACTTTCTT‑TT‑GTGAGGTTTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGgtgt < 2:938597/91‑1 (MQ=255) aGAAAGGACTACATTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTa > 1:3030310/1‑91 (MQ=255) gAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAg > 2:107104/1‑91 (MQ=255) aaaGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGc > 2:2380536/1‑91 (MQ=255) aaGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCa > 2:1760552/1‑91 (MQ=255) ggACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCATa > 1:3088054/1‑91 (MQ=255) ggACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCATa > 2:51291/1‑91 (MQ=255) gACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCATAc > 2:2708180/1‑91 (MQ=255) actactTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGCTTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCATACa > 2:888746/1‑91 (MQ=255) actactTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCATACa < 1:966501/91‑1 (MQ=255) actactTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCATACa > 1:3721111/1‑91 (MQ=255) actactTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCATACa > 1:2740194/1‑91 (MQ=255) ctactTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCATACaa > 2:3043342/1‑91 (MQ=255) ctactTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCATACaa < 1:3122262/91‑1 (MQ=255) ctactTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTAGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCATACaa > 1:3339803/1‑91 (MQ=255) | ACTTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCATACAA > USA300TCH1516_ALE/1218642‑1218822 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |