| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 1,218,734 | A→C | 11.7% | intergenic (+225/+38) | USA300HOU_RS06065 → / ← USA300HOU_RS06070 | hypothetical protein/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 1,218,734 | 0 | A | C | 11.7% | 604.7 / 68.2 | 202 | intergenic (+225/+38) | USA300HOU_RS06065/USA300HOU_RS06070 | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (89/89); new base C (8/16); total (97/105) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.35e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.25e-01 | |||||||||||
Only 100 of 225 total aligned reads displayed.
TTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCATACAAAG > USA300TCH1516_ALE/1218644‑1218824 | aaaTGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGactact < 2:452628/91‑1 (MQ=255) gatgatACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTActttct > 2:2932206/1‑91 (MQ=255) gatgatACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTActttct < 1:1200044/91‑1 (MQ=255) gatgatACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCA‑CAAAAGAAAGTAGTCctttctt < 2:2913894/91‑1 (MQ=25) atgatACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTActttctt < 1:3111272/91‑1 (MQ=255) atgatACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCA‑CAAAAGAAAGTAGTCctttctta < 1:798432/91‑2 (MQ=21) tgatACGTTATTTAAAAACACGATACTTCGTTTCAATGAGCGCATTAAATAATAAATAAACACCTCA‑CAAAAGAAAGTAGTCctttcttat < 2:2038579/91‑3 (MQ=21) gatACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCtt‑tt < 1:124588/91‑1 (MQ=255) atACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCA‑CAAAAGAAAGTAGTCctttcttatgg < 2:1520314/91‑5 (MQ=21) cGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGa < 1:2374706/91‑1 (MQ=255) cGTTATTTAAAAACACGATACTTCGTGTCAATAAACGCATTAAATATTATATAAACTCCTCACCATAAGGTAGGACTACTTTCTT‑TT‑GTGa < 2:1239441/91‑1 (MQ=255) ttATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAgg > 2:745898/1‑91 (MQ=255) ttATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAgg < 1:2609939/91‑1 (MQ=255) tATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCA‑CAAAAGAAAGTAGTCCTTTCTTATG‑GTGAGgt < 1:3837020/91‑1 (MQ=17) tATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCA‑CAAAAGAAAGTAGTCCTTTCTTATG‑GTGAGgt < 1:330213/91‑1 (MQ=17) tttAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGgtgt < 2:3849328/91‑1 (MQ=255) ttAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGtt < 1:2209285/91‑1 (MQ=255) tAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGttt < 1:3349698/91‑1 (MQ=255) aaaCACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTAtt < 2:2671691/91‑1 (MQ=255) aaCACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTAttt > 1:3925925/1‑91 (MQ=255) acacGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTg < 2:3654882/91‑1 (MQ=255) acacGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTg > 1:2651647/1‑91 (MQ=255) acacGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCA‑CAAAAGAAAGTAGTCCTTTCTTATG‑GTGAGGTGTTTAttta < 1:3448576/91‑2 (MQ=11) acacGAGACTTCGTTTCAATGGGCGCATTAAATAATGAGTAAACGTCTCACCAGAAGAAAGGGCTACGTTCTT‑TT‑GTGAGGTGTTTATTTg < 2:3656257/91‑1 (MQ=255) cacGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGt > 1:11082/1‑91 (MQ=255) cacGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGt < 2:1558508/91‑1 (MQ=255) acGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTc > 1:1895818/1‑91 (MQ=255) cGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCg > 1:642275/1‑91 (MQ=255) cGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCg < 1:902956/91‑1 (MQ=255) cGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCg < 1:433252/91‑1 (MQ=255) gATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGa > 2:2592315/1‑91 (MQ=255) aTACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGAc > 1:3612745/1‑91 (MQ=255) tACTTCGTTTCAATGAACGCATTAAATAATAAATACACACCTCACCATACGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACa > 2:3165268/1‑91 (MQ=255) ttCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACt < 1:716904/91‑1 (MQ=255) tCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACtt > 2:1650738/1‑91 (MQ=255) tCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACtt < 2:2079422/91‑1 (MQ=255) cGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTg < 2:3580994/91‑1 (MQ=255) gTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGa > 1:3088542/1‑91 (MQ=255) ttCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGAtt > 1:1010180/1‑91 (MQ=255) ttCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGAtt < 2:2492768/91‑1 (MQ=255) tCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTa < 1:1831263/91‑1 (MQ=255) aaTGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATg > 1:515841/1‑91 (MQ=255) aTGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGa < 2:1674367/91‑1 (MQ=255) aTGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGa > 2:1836425/1‑91 (MQ=255) aTGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGa > 1:3010014/1‑91 (MQ=255) tGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGAt > 2:821556/1‑91 (MQ=255) gAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGAtt < 2:3106492/91‑1 (MQ=255) aaCGCATTAAATAATAAATAAGCACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAAGTGTTTATTTGACGACAACTTGATTATGATTg < 2:483669/91‑1 (MQ=255) aCGCATTAAATAATAAATAAACACCTCGCCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGt < 2:2729102/91‑1 (MQ=255) aCGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGt > 1:115873/1‑91 (MQ=255) cGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGtt < 2:1027553/91‑1 (MQ=255) cGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGtt < 2:2004021/91‑1 (MQ=255) cGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGtt < 1:3325662/91‑1 (MQ=255) cGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGtt < 1:3916519/91‑1 (MQ=255) cGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACGTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGtt < 1:2280618/91‑1 (MQ=255) cATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTc < 1:3079392/91‑1 (MQ=255) aTTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCa > 2:3827661/1‑91 (MQ=255) aaataataaataaACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCAttt < 2:1365437/91‑1 (MQ=255) aataataaataaACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCAtttt < 1:1641885/91‑1 (MQ=255) ataataaataaACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCAttttt > 1:357487/1‑91 (MQ=255) ataataaataaACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCAttttt > 1:1933328/1‑91 (MQ=255) taataaataaACTCCTCACCATGAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCAtttttt < 2:2131532/91‑1 (MQ=255) taataaataaACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCAtttttt < 1:1379458/91‑1 (MQ=255) ataaataaACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGa < 1:1612640/91‑1 (MQ=255) taaataaaCACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGaa < 2:2626018/91‑1 (MQ=255) taaataaaCACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGaa < 2:3382182/91‑1 (MQ=255) ataaaCACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATaa > 2:245107/1‑91 (MQ=255) ataaaCACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATaa < 1:2930751/91‑1 (MQ=255) taaaCACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTCTTTGAATacg > 2:3620574/1‑89 (MQ=255) acCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCAt > 2:2913088/1‑91 (MQ=255) ccTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATa < 2:1144837/91‑1 (MQ=255) cACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATc < 1:2456342/91‑1 (MQ=255) cACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATc > 1:255728/1‑91 (MQ=255) aCCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGCGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTtcatcatca > 2:3875809/1‑91 (MQ=255) ccATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAg > 1:3577161/1‑91 (MQ=255) ccATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAg > 1:2022192/1‑91 (MQ=255) ccATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAg < 1:470464/91‑1 (MQ=255) acaaaaGAAAGTAGTCCTTTCTT‑ATGGTGAGGTGTTTATTTGTTGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCa > 2:2012257/5‑91 (MQ=18) caaaaGAAAGTAGTCCTTTCTTATG‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAg > 2:422806/4‑91 (MQ=21) cATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAgg < 2:2808431/91‑1 (MQ=255) cATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAgg > 1:2888643/1‑91 (MQ=255) tAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTTATTTTTTGAATAAGTTCATAATCAGgtg > 2:1040595/1‑91 (MQ=255) aaGAAAGTGCTACTTTCTT‑TT‑GTGAGGTTTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGgtgt < 2:938597/91‑1 (MQ=255) aaGAAAGTAGTCCTTTCTTATG‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGgtg > 2:3193226/1‑91 (MQ=21) aaGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGgtgt < 1:3371915/91‑1 (MQ=255) aGAAAGGACTACTTTCTC‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATCGTTTCATTTCTTGAATAAGTTCATAATCAGGTGTa > 2:1918019/1‑91 (MQ=255) aGAAAGGACTACGTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTa > 1:3030287/1‑91 (MQ=255) gAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAg < 2:3733675/91‑1 (MQ=255) gAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAg > 2:107104/1‑91 (MQ=255) aaaGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGc > 2:3008547/1‑91 (MQ=255) aaaGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGc > 2:2380536/1‑91 (MQ=255) aaGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCa > 2:163644/1‑91 (MQ=255) aaGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCa > 2:1760552/1‑91 (MQ=255) ggACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCATa > 2:51291/1‑91 (MQ=255) gACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCATAc > 2:2710342/1‑91 (MQ=255) actactTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGCTTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCATACa > 2:888746/1‑91 (MQ=255) actactTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCATACa < 1:966501/91‑1 (MQ=255) actactTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCATACa > 1:3721111/1‑91 (MQ=255) actactTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCATACa > 1:2740194/1‑91 (MQ=255) ctactTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCATACaa < 1:3122804/91‑1 (MQ=255) | TTAAATGATGATACGTTATTTAAAAACACGATACTTCGTTTCAATGAACGCATTAAATAATAAATAAACACCTCACCATAAGAAAGGACTACTTTCTT‑TT‑GTGAGGTGTTTATTTGTCGACAACTTGATTATGATTGTTTCATTTTTTGAATAAGTTCATAATCAGGTGTAGCATACAAAG > USA300TCH1516_ALE/1218644‑1218824 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |