| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 1,221,660 | T→C | 8.7% | intergenic (+75/‑141) | rpoZ → / → coaBC | DNA‑directed RNA polymerase subunit omega/Coenzyme A biosynthesis bifunctional protein CoaBC |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 1,221,660 | 0 | T | C | 8.7% | 617.5 / 36.4 | 213 | intergenic (+75/‑141) | rpoZ/coaBC | DNA‑directed RNA polymerase subunit omega/Coenzyme A biosynthesis bifunctional protein CoaBC |
| Reads supporting (aligned to +/- strand): ref base T (99/95); new base C (7/12); total (106/107) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.37e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.65e-01 | |||||||||||
Only 100 of 217 total aligned reads displayed.
TTATGGTAAAGAATAGTTTCGACCATTAAAAATATGTGAAGCTAGACGTACATCAAATACGTCAAGGCATATCCAAATCAAACGCACCTATGTAGGTGTGTTTTTTTAGTTTATCCAATGATTGATGTTATAATAATACTAAATTTGTATCTATAAAAAAGTAATGAGCATTTGTGCGCAT > USA300TCH1516_ALE/1221570‑1221750 | ttatGGTAAAGAATAGTTTCGACCATTAAAAATATGTGAAGCTAGACGTACATCAAATACGTCAAGGCATATCCAAATCAAACGCACCTAt < 1:1024094/91‑1 (MQ=255) tatGGTAAAGAATAGTTTCGACCATTAAAAATATGTGAAGCTAGACGTACATCAAATACGTCAAGGCATATCCAAATCAAACGCACCTATg > 2:3326930/1‑91 (MQ=255) tatGGTAAAGAATAGTTTCGACCATTAAAAACATGTGAAGCTAGACGTACATCAAATACGTCAAGGCATATCCAAATCAAACGCACCTATg > 1:3509017/1‑91 (MQ=255) atGGTAAAGAATAGTTTCGACCATTAAAAATATGTGAAGCTAGACGTACATCAAATACGTCAAGGCATATCCAAATCAAACGCACCTATGt > 2:3962909/1‑91 (MQ=255) atGGTAAAGAATAGTTTCGACCATTAAAAATATGTGAAGCTAGACGTACATCAAATACGTCAAGGCATATCCAAATCAAACGCACCTATGt > 2:2291441/1‑91 (MQ=255) aaaGAATAGTTTCGACCATTAAAAATATGTGAAGCTAGACGTACATCAAATACGTCAAGGCATATCCAAATCAAACGCACCTATGTAGgtg < 2:1196881/91‑1 (MQ=255) aaaGAATAGTTTCGACCATTAAAAATATGTGAAGCTAGACGTACATCAAATACGTCAAGGCATATCCAAATCAAACGCACCTATGTAGgtg < 1:1126152/91‑1 (MQ=255) aaaGAATAGTTTCGACCATTAAAAATATGTGAAGCTAGACGTACATCAAATACGTCAAGGCATATCCAAATCAAACACACCTACATAGgtg < 1:1117713/91‑1 (MQ=255) aaGAATAGTTTCGACCATTAAAAATATGTGAAGCTAGACGTACATCAAATACGTCAAGGCATATCCAAATCAAACGCACCTATGTAGgtgt < 2:493716/91‑1 (MQ=255) aaGAATAGTTTCGACCATTAAAAATATGTGAAGCTAGACGTACATCAAATACGTCAAGGCATATCCAAATCAAACGCACCTATGTAGgtgt > 2:2986018/1‑91 (MQ=255) aaGAATAGTTTCGACCATTAAAAATATGTGAAGCTAGACGTACATCAAATACGTCAAGGCATATCCAAATCAAACACACCTACATAGgtgc < 1:2095934/91‑2 (MQ=255) aaGAATAGTTTCGACCATTAAAAATATGTGAAGCTAGACGTACATCAAATACGTCAAGGCATATCCAAATCAAACACACCTACATAGgtgc < 1:5735/91‑2 (MQ=255) aaGAATAGTTTCGACCATTAAAAATATGTGAAGCTAGACGTACATCAAATACGTCAAGGCATATCCAAATCAAACACACCTACATAGgtgc < 1:991932/91‑2 (MQ=255) aGAATAGTTTCGACCATTAAAAATATGTGAAGCTAGACGTACATCAAATACGTCAAGGCATATCCAAATCAAACGCACCTATGTAGgtgtg < 2:1029043/91‑1 (MQ=255) aGAATAGTTTCGACCATTAAAAATATGTGAAGCTAGACGTACATCAAATACGTCAAGGCATATCCAAATCAAACGCACCTATGTAGgtgtg < 1:201329/91‑1 (MQ=255) gAATAGTTTCGACCATTAAAAATATGTGAAGCTAGACGTACATCAAATACGTCAAGGCATATCCAAATCAAACGCACCTATGTAGgtgtgt < 1:3598009/91‑1 (MQ=255) aTAGTTTCGACCATTAAAAATATGTGAAGCTAGACGTACATCAAATACGTCAAGGCATATCCAAATCAAACGCACCTATGTAGGTGTGttt > 1:664053/1‑91 (MQ=255) aTAGTTTCGACCATTAAAAATATGTGAAGCTAGACGTACATCAAATACGTCAAGGCATATCCAAATCAAACGCACCTATGTAGGTGTGttt > 2:3573719/1‑91 (MQ=255) aGTTTCGACCATTAAAAATATGTGAAGCTAGACGTACATCGAATACGTCAAGGCATATCCAAATCAAACGCACCTATGTAGGTGTGttttt > 2:3245825/1‑91 (MQ=255) gTTTCGACCATTAAAAATATGTGAAGCTAGACGTACATCAAATACGTCAAGGCATATCCAAATCAAACGCACCTATGTAGGTGTGtttttt < 1:867888/91‑1 (MQ=255) gTTTCGACCATTAAAAATATGTGAAGCTAGACGTACATCAAATACGTCAAGGCATATCCAAATCAAACGCACCTATGTAGGTGTGtttttt > 2:3042927/1‑91 (MQ=255) ttCGACCATTAAAAATATGTGAAGCTAGACGTACATCAAATACGTCAAGGCATATCCAAATCAAACGCACCTATGTAGGTGTGTTTTTTTa > 2:2814700/1‑91 (MQ=255) tCGACCATTAAAAATATGTGAAGCTAGACGTACATCAAATACGTCAAGGCATATCCAAATCAAACGCACCTATGTAGGTGTGTTTTTTTAg < 2:2937727/91‑1 (MQ=255) tCGACCATTAAAAATATGTGAAGCTAGACGTACATCAAATACGTCAAGGCATATCCAAATCAAACGCACCTATGTAGGTGTGTTTTTTTAg < 1:1861033/91‑1 (MQ=255) cGACCATTAAAAATATGTGAAGCTAGACGTACATCAAATACGTCAAGGCATATCCAAATCAAACGCACCTATGTAGGTGTGTTTTTTTAGt > 2:1802695/1‑91 (MQ=255) cGACCATTAAAAATATGTGAAGCTAGACGTACATCAAATACGTCAAGGCATATCCAAATCAAACGCACCTATGTAGGTGTGTTTTTTTAGt < 2:3136508/91‑1 (MQ=255) gACCATTAAAAATATGTGAAGCTAGACGTACATCAAATACGTCAAGGCATATCCAAATCAAACGCACCTATGTAGGTGTGTTTTTTTAGtt > 2:1430759/1‑91 (MQ=255) gACCATTAAAAATATGTGAAGCTAGACGTACATCAAATACGTCAAGGCATATCCAAATCAAACGCACCTATGTAGGTGTGTTTTTTTAGtt < 2:1083006/91‑1 (MQ=255) gACCATTAAAAATATGTGAAGCTAGACGTACATCAAATACGTCAAGGCATATCCAAATCAAACGCACCTATGTAGGTGTGTTTTTTTAGtt > 2:2864973/1‑91 (MQ=255) cATTAAAAATATGTGAAGCTAGACGTACATCAAATACGTCAAGGCATATCCAAATCAAACGCACCTATGTAGGTGTGTTTTTTTAGTTTAt < 2:2141694/91‑1 (MQ=255) tAAAAATATGTGAAGCTAGACGTACATCAAATACGTCAAGGCATATCCAAATCAAACGCACCTATGTAGGTGTGTTTTTTTAGTTTATCCa < 1:1158271/91‑1 (MQ=255) tAAAAATATGTGAAGCTAGACGTACATCAAATACGTCAAGGCATATCCAAATCAAACGCACCTATGTAGGTGTGTTTTTTTAGTTTATCCa < 2:1493270/91‑1 (MQ=255) aaaaTATGTGAAGCTAGACGTACATCAAATACGTCAAGGCATATCCAAATCAAACGCACCTATGTAGGTGTGTTTTTTTAGTTTATCCAAt > 1:595399/1‑91 (MQ=255) aaaTATGTGAAGCTAGACGTACATCAAATACGTCAAGGCATATCCAAATCAAACGCACCTATGTAGGTGTGTTTTTTTAGTTTATCCAAtg < 1:1213815/91‑1 (MQ=255) aaTATGTGAAGCTAGACGTACATCAAATACGTCAAGGCATATCCAAATCAAACGCACCTATGTAGGTGTGTTTTTTTAGTTTATCCAAtga < 2:2209528/91‑1 (MQ=255) aaTATGTGAAGCTAGACGTACATCAAATACGTCAAGGCATATCCAAATCAAACGCACCTATGTAGGTGTGTTTTTTTAGTTTATCCAAtga > 2:877278/1‑91 (MQ=255) aaTATGTGAAGCTAGACGTACATCAAATACGTCAAGGCATATCCAAATCAAACGCACCTATGTAGGTGTGTTTTTTTAGTTTATCCAAtga < 1:3275354/91‑1 (MQ=255) tatGTGAAGCTAGACGTACATCAAATACGTCAAGGCATATCCAAATCAAACGCACCTATGTAGGTGTGCTTTTTTAGTTTATCCAAtgatt > 2:3184380/1‑91 (MQ=255) atGTGAAGCTAGACGTACATCAAATACGTCAAGGCATATCCAAATCAAACGCACCTATGTAGGTGTGTTTTTTTAGTTTATCCAAtgattg < 1:1072992/91‑1 (MQ=255) tgtgAAGCTAGACGTACATCAAATACGTCAAGGCATATCCAAATCAAACGCACCTATGTAGGTGTGTTTTTTTAGTTTATCCAAtgattga > 1:1755112/1‑91 (MQ=255) tgtgAAGCTAGACGTACATCAAATACGTCAAGGCATACCCAAATCAAACGCCCCTATGTAGGTGTATTTTTTTAGTTTATCCAAtcattga > 1:3679492/1‑91 (MQ=255) gtaaaGCTAGACGTACATCAAATACGTCAAGGCATATCCATATCAAACGCACCTATGTAGGTGTGTTTTTTTAGTTTATCCAAtgattgat < 2:1827057/88‑1 (MQ=255) gagAAGCTAGACGTACATCAAATACGTCAAGGCATATCCAAATCAAACGCACCTATGTAGGTGTGTTTTTTTAGTTTATCCAAtgattgat < 2:2635162/89‑1 (MQ=255) aaGCTAGACGTACATCAAATACGTCAAGGCATATCCAAATCAAACGCACCTATGTAGGTGTGTTTTTTTAGTTTATCCAATGATTGATGtt < 1:1260865/91‑1 (MQ=255) gCTAGACGTACATCAAATACGTCAAGGCATATCCAAATCAAACGCACCTATGTAGGTGTGTTTTTTTAGTTTATCCAATGATTGATGTtat < 1:2249165/91‑1 (MQ=255) cTAGACGTACATCAAATACGTCAAGGCATATCCAAATCAAACGCACCTATGTAGGTGTGTTTTTTTAGTTTATCCAATGATTGATGTtata < 2:3307094/91‑1 (MQ=255) cTAGACGTACATCAAATACGTCAAGGCATATCCAAATCAAACGCACCTATGTAGGTGTGTTTTTTTAGTTTATCCAATGATTGATGTtata < 2:2056174/91‑1 (MQ=255) aGACGTACATCAAATACGTCAAGGCATATCCAAATCAAACGCACCTATGTAGGTGTGTTTTTTTAGTTTATCCAATGATTGATGTTataat > 1:159307/1‑91 (MQ=255) gACGTACATCAAATACGTCAAGGCATATCCAAATCAAACGCACCTATGTAGGTGTGTTTTTTTAGTTTATCCAATGATTGATGTTataata < 1:881628/91‑1 (MQ=255) cGTACATCAAATACGTCAAGGCATATCCAAATCAAACGCACCTATGTAGGTGTGTTTTTTTAGTTTATCCAATGATTGATGTTataataat < 1:3837131/91‑1 (MQ=255) cGTACATCAAATACGTCAAGGCATATCCAAATCAAACGCACCTATGTAGGTGTGTTTTTTTAGTTTATCCAATGATTGATGTTataataat < 1:1754194/91‑1 (MQ=255) cGTACATCAAATACGTCAAGGCATATCCAAATCAAACGCACCTATGTAGGTGTGTTTTTTTAGTTTATCCAATGATTGATGTTataataat > 1:1885469/1‑91 (MQ=255) cGTACATCAAATACGTCAAGGCATATCCAAATCAAACGCACCTATGTAGGTGTGTTTTTTTAGTTTATCCAATGATGGATGTTataataat > 1:3909882/1‑91 (MQ=255) tACATCAAATACGTCAAGGCATATCCAAATCAAACGCACCTATGTAGGTGTGTTTTTTTAGTTTATCCAATGATTGATGTTATAATAATAc < 2:504032/91‑1 (MQ=255) tACATCAAATACGTCAAGGCATATCCAAATCAAACGCACCTATGTAGGTGTGTTTTTTTAGTTTATCCAATGATTGATGTTATAATAATAc < 1:1787818/91‑1 (MQ=255) aCATCAAATACGTCAAGGCATATCCAAATCAAACGCACCTATGTAGGTGTGTTTTTTTAGTTTATCCAATGATTGATGTTATAATAATACt < 2:1010398/91‑1 (MQ=255) cATCAAATACGTCAAGGCATATCCAAATCAAACGCACCTATGTAGGTGTGTTTTTTTAGTTTATCCAATGATTGATGTTATAATAATACTa > 2:722341/1‑91 (MQ=255) cATCAAATACGTCAAGGCATATCCAAATCAAACGCACCTATGTAGGTGTGTTTTTTTAGTTTATCCAATGATTGATGTTATAATAATACTa < 1:3392889/91‑1 (MQ=255) cATCAAATACGTCAAGGCATATCCAAATCAAACGCACCTATGTAGGTGTGTTTTTTTAGTTTATCCAATGATTGATGTTATAATAATACTa > 1:3814206/1‑91 (MQ=255) tCAAATACGTCAAGGCATATCCAAATCAAACGCACCTATGTAGGTGTGTTTTTTTAGTTTATCCAATGATTGATGTTATAATAATACTaaa > 2:732492/1‑91 (MQ=255) aaaTACGTCAAGGCATATCCAAATCAAACGCACCTATGTAGGTGTGTTTTTTTAGTTTATCCAATGATTGATGTTATAATAATACTAAAtt < 2:1532526/91‑1 (MQ=255) aaTACGTCAAGGCATATCCAAATCAAACGCACCTATGTAGGTGTGTTTTTTTAGTTTATCCAATGATTGATGTTATAATAATACTAAAttt < 2:3822389/91‑1 (MQ=255) aaTACGTCAAGGCATATCCAAATCAAACGCACATATGTAGGTGTGTTTTTTTAGTTTATCCAATGATTGATGTTATAATAATACTAAAttt < 1:3355757/91‑1 (MQ=255) aTACGTCAAGGCATATCCAAATCAAACGCACCTATGTAGGTGTGTTTTTTTAGTTTATCCAATGATTGATGTTATAATAATACTAAATTTg < 2:1714134/91‑1 (MQ=255) aTACGTCAAGGCATATCCAAATCAAACGCACCTATGTAGGTGTGTTTTTTTAGTTTATCCAATGATTGATGTTATAATAATACTAAATTTg > 2:2202940/1‑91 (MQ=255) aTACGTCAAGGCATATCCAAATCAAACGCACCTATGTAGGTGTGTTTTTTTAGTTTATCCAATGATTGATGTTATAATAATACTAAATTTg > 2:3767025/1‑91 (MQ=255) aCGTCAAGGCATATCCAAATCAAACGCACCTATGTAGGTGTGTTTTTTTAGTTTATCCAATGATTGATGTTATAATAATACTAAATTTGTa > 2:756561/1‑91 (MQ=255) aCGTCAAGGCATATCCAAATCAAACGCACCTATGTAGGTGTGTTTTTTTAGTTTATCCAATGATTGATGTTATAATAATACTAAATTTGTa > 1:2181748/1‑91 (MQ=255) aCGTCAAGGCATATCCAAATCAAACGCACCTATGTAGGTGTGTTTTTTTAGTTTATCCAATGATTGATGTTATAATAATACTAAATTTGTa > 1:1144063/1‑91 (MQ=255) cGTCAAGGCATATCCAAATCAAACGCACCTATGTAGGTGTGTTTTTTTAGTTTATCCAATGATTGATGTTATAATAATACTAAATTTGTAt < 1:3090554/91‑1 (MQ=255) gTCAAGGCATATCCAAATCAAACGCACCTATGTAGGTGTGTTTTTTTAGTTTATCCAATGATTGATGTTATAATAATACTAAATTTGTATc < 1:1510728/91‑1 (MQ=255) gTCAAGGCATATCCAAATCAAACGCACCTATGTAGGTGTGTTTTTTTAGTTTATCCAATGATTGATGTTATAATAATACTAAATTTGTATc < 1:1511814/91‑1 (MQ=255) gTCAAGGCATATCCAAATCAAACGCACCTATGTAGGTGTGTTTTTTTAGTTTATCCAATGATTGATGTTATAATAATACTAAATTTGTATc < 1:3022370/91‑1 (MQ=255) gTCAAGGCATATCCAAATCAAACGCACCTATGTAGGTGTGTTTTTTTAGTTTATCCAATGATTGATGTTATAATAATACTAAATTTGTATc < 2:2587766/91‑1 (MQ=255) gTCAAGGCATATCCAAATCAAACGCACCTATGTAGGTGTGTTTTTTTAGTTTATCCAATGATTGATGTTATAATAATACTAAATTTGTATc < 2:2554701/91‑1 (MQ=255) gTCAAGGCATATCCAAATCAAACGCACCTATGTAGGTGTGTTTTTTTAGTTTATCCAATGATTGATGTTATAATAATACTAAATTTGTATc > 2:2256365/1‑91 (MQ=255) gTCAAGGCATATCCAAATCAAACGCACCTATGTAGGTGTGTTTTTTTAGTTTATCCAATGATTGATGTAATAATAATACTAAATTTGTATc < 2:2996506/91‑1 (MQ=255) ggCATATCCAAATCAAACGCACCTATGTAGGTGTGTTTTTTTAGTTTATCCAATGATTGATGTTATAATAATACTAAATTTGTATCTATaa > 2:2169686/1‑91 (MQ=255) gCATATCCAAATCAAACGCACCTATGTAGGTGTGTTTTTTTAGTTTATCCAATGATTGATGTTATAATAATACTAAATTTGTATCTATaaa < 1:3240845/91‑1 (MQ=255) gCATATCCAAATCAAACGCACCTATGTAGGTGTGTTTTTTTAGTTTATCCAATGATTGATGTTATAATAATACTAAATTTGTATCTATaaa < 2:1363345/91‑1 (MQ=255) cATATCCAAATCAAACGCACCTATGTAGGTGTGTTTTTTTAGTTTATCCAATGATTGATGTTATAATAATACTAAATTTGTATCTATaaaa > 2:466571/1‑91 (MQ=255) cATATCCAAATCAAACGCACCTATGTAGGTGTGTTTTTTTAGTTTATCCAATGATTGATGTTATAATAATACTAAATTTGTATCTATaaaa > 1:308048/1‑91 (MQ=255) atatCCAAATCAAACGCACCTATGTAGGTGTGTTTTTTTAGTTTATCCAATGATTGATGTTATAATAATACTAAATTTGTATCTATaaaaa < 1:2823199/91‑1 (MQ=255) tatCCAAATCAAACGCACCTATGTAGGTGTGTTTTTTTAGTTTATCCAATGATTGATGTTATAATAATACTAAATTTGTATCTATaataaa > 1:3188624/1‑91 (MQ=255) tatCCAAATCAAACGCACCTATGTAGGTGTGTTTTTTTAGTTTATCCAATGATTGATGTTATAATAATACTAAATTTGTATCTATaaaaaa > 2:1973611/1‑91 (MQ=255) aaTCAAACGCACCTATGTAGGTGTGTTTTTTTAGTTTATCCAATGATTGATGTTATAATAATACTAAATTTGTATCTATAAAAAAGTAATg > 1:673709/1‑91 (MQ=255) tCAAACGCGCATATGTAGGTGTGTTGTTTTAGTTTATCCAATGATTGATGTTATAATAATACTAAATTTGTATCTATAAAAAAGTAATGAg < 2:1656622/91‑1 (MQ=255) tCAAACGCACCTATGTAGGTGTGTTTTTTTAGTTTATCCAATGATTGATGTTATAATAATACTAAATTTGTATCTATAAAAAAGTAATGAg < 2:156876/91‑1 (MQ=255) tCAAACGCACCTATGTAGGTGTGTTTTTTTAGTTTATCCAATGATTGATGTTATAATAATACTAAATTTGTATCTATAAAAAAGTAATGAg > 2:780416/1‑91 (MQ=255) cAAACGCACCTATGTAGGTGTGTTTTTTTAGTTTATCCAATGATTGATGTTATAATAATACTAAATTTGTATCTATAAAAAAGTAATGAGc < 1:2541283/91‑1 (MQ=255) aaaCGCACCTATGTAGGTGTGTTTTTTTAGTTTATCCAATGATTGATGTTATAATAATACTAAATTTGTATCTATAAAAAAGTAATGAGCa < 2:1596121/91‑1 (MQ=255) acacACCTACATAGGTGCGTTTTTTTAGTTTATCCAATGATTGATGTTATAATAATACTAAATTTGTATCTATAAAAAAGTAATGAGCAtt > 1:2971576/4‑91 (MQ=255) cGCACCTATGTAGGTGTGTTTTTTTAGTTTATCCAATGATTGATGTTATAATAATACTAAATTTGTATCTATAAAAAAGTAATGAGCCttt > 1:3560403/1‑91 (MQ=255) cGCACCTATGTAGGTGTGTTTTTTTAGTTTATCCAATGATTGATGTTATAATAATACTAAATTTGTATCTATAAAAAAGTAATGAGCAttt > 1:264958/1‑91 (MQ=255) gCACCTATGTAGGTGTGTTTTTTTAGTTTATCCAATGATTGATGTTATAATAATACTAAATTTGTATCTATAAAAAAGTAATGAGCATTtg > 1:1903328/1‑91 (MQ=255) acACCTACATAGGTGCGTTTTTTTAGTTTATCCAATGATGGATGTTATAATAATACTAAATTTGTATCTATAAAAAAGTAATGAGCATTtg > 1:2119897/2‑91 (MQ=255) aCCTATGTAGGTGTGTTTTTTTAGTTTATCCAATGATTGATGTTATAATAATACTAAATTTGTATCTATAAAAAAGTAATGAGCATTtgtg > 2:238679/1‑91 (MQ=255) cTATGTAGGTGTGTTTTTTTAGTTTATCCAATGATTGATGTTATAATAATACTAAATTTGTATCTATAAAAAAGTAATGAGCATTTGTgcg > 2:304652/1‑91 (MQ=255) aTGTAGGTGTGTTTTTTTAGTTTATCCAATGATTGATGTTATAATAATACTAAATTTGTATCTATAAAAAAGTAATGAGCATTTGTGCGCa > 1:130415/1‑91 (MQ=255) aTGTAGGTGTGTTTTTTTAGTTTATCCAATGATTGATGTTATAATAATACTAAAATTGTATCTATAAAAAAGTAATGAGCATTTGTGCGCa > 2:3907161/1‑91 (MQ=255) | TTATGGTAAAGAATAGTTTCGACCATTAAAAATATGTGAAGCTAGACGTACATCAAATACGTCAAGGCATATCCAAATCAAACGCACCTATGTAGGTGTGTTTTTTTAGTTTATCCAATGATTGATGTTATAATAATACTAAATTTGTATCTATAAAAAAGTAATGAGCATTTGTGCGCAT > USA300TCH1516_ALE/1221570‑1221750 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |