| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 1,421,625 | G→A | 7.5% | intergenic (+61/+79) | pepF1_2 → / ← phoU | Oligoendopeptidase F, plasmid/Phosphate‑specific transport system accessory protein PhoU |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 1,421,625 | 0 | G | A | 7.5% | 783.7 / 29.7 | 248 | intergenic (+61/+79) | pepF1_2/phoU | Oligoendopeptidase F, plasmid/Phosphate‑specific transport system accessory protein PhoU |
| Reads supporting (aligned to +/- strand): ref base G (113/115); new base A (15/5); total (128/120) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.55e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 270 total aligned reads displayed.
ACAGATGAAATTGAGCAAGCAAATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTTATAGTAATAACTTTAAGTTATTGTTCGT > USA300TCH1516_ALE/1421535‑1421714 | aCAGATGAAATTGAGCAAGCAAATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTgag > 2:1339813/1‑91 (MQ=255)aCAGATGAAATTGAGCAAGCAAATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTgag > 1:3640930/1‑91 (MQ=255)aCAGATGAAATTGAGCAAGCAAATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTgag > 2:2474950/1‑91 (MQ=255)aCAGATGAAATTGAGCAAGCAAATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTgag > 2:1849303/1‑91 (MQ=255)aCAGATGAAATTGAGCAAGCAAATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTgag > 2:2016187/1‑91 (MQ=255)aCAGATGAAATTGAGCAAGCAAATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTgag > 2:650010/1‑91 (MQ=255) aGATGAAATTGAGCAAGCAAATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGaa > 2:190714/1‑91 (MQ=255) gATGAAATTGAGCAAGCAAATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAAt > 1:1704375/1‑91 (MQ=255) aTGAAATTGAGCAAGCAAATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATc < 2:83355/91‑1 (MQ=255) tGAAATTAAGCAAGCAAATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATACTCACAATTAGTAA‑TGTGAAAATCt < 2:643981/91‑1 (MQ=21) aTTGAGCAAGCAAATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGt < 2:3381195/91‑1 (MQ=255) tGAGCACGCAAATGACTAAGATGCGAGACAATTTATGGTAGAACAATATAAACCAAGATTATCAC‑ATTACTAATTGTGCGAATCTTGGttt > 2:3463690/1‑91 (MQ=255) tGAGCAAGCAAATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGCATCTTGGttt > 2:2178888/1‑91 (MQ=255) gcaagcaaATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGtttttt < 1:3432738/91‑1 (MQ=255) gcaagcaaATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGtttttt > 1:3024938/1‑91 (MQ=255) caagcaaATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGttttttt > 2:1532282/1‑91 (MQ=255) caagcaaATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGttttttt > 1:2152884/1‑91 (MQ=255) caagcaaATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGttttttt < 2:488742/91‑1 (MQ=255) caagcaaATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGttttttt > 1:3327036/1‑91 (MQ=255) aagcaaATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTg < 1:1098936/91‑1 (MQ=255) caaATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAgg < 1:2281496/91‑1 (MQ=255) aTAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGtt > 1:675605/1‑91 (MQ=255) tAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGttt > 1:1751573/1‑91 (MQ=255) tAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGttt < 2:3933107/91‑1 (MQ=255) aaCTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTa > 2:131240/1‑91 (MQ=255) aCTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTGTGAGGGTTTAt > 1:3585281/1‑91 (MQ=255) tAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGa > 2:699608/1‑91 (MQ=255) tAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGa > 1:670385/1‑91 (MQ=255) aGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGaat < 1:2882078/91‑1 (MQ=255) aGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGaat < 1:1580552/91‑1 (MQ=255) aGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGaat > 2:2492960/1‑91 (MQ=255) aGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGaat < 2:2890769/91‑1 (MQ=255) aTGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGaataa < 1:673818/91‑1 (MQ=255) aTGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGaataa < 1:3774040/91‑1 (MQ=255) agaCAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGaa > 1:2576916/1‑91 (MQ=255) gaCAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGaaa < 1:3204035/91‑1 (MQ=255) gaCAATGTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGaaa < 2:1076708/91‑1 (MQ=255) aTTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAatata > 1:2844019/1‑91 (MQ=255) tttATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAatatat > 1:539964/1‑91 (MQ=255) tataGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAatatatat > 1:1843120/1‑91 (MQ=255) tataGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAatatatat > 1:1201671/1‑91 (MQ=255) ataGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATAtt > 1:1408209/1‑91 (MQ=255) tagtagAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATAttt > 1:3928823/1‑91 (MQ=255) agtagAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGATTAATAGAAATATATATTTa > 2:3072020/1‑91 (MQ=255) aaCAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTa < 1:354487/91‑1 (MQ=255) aCAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTaa < 1:2695533/91‑1 (MQ=255) aCAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTaa < 1:2957199/91‑1 (MQ=255) cAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAg < 1:1353270/91‑1 (MQ=255) aaTATAAACCAAGGTTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAgg < 2:2381812/91‑1 (MQ=255) aaTATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAgg < 2:3592974/91‑1 (MQ=255) aaTATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAgg < 1:246000/91‑1 (MQ=255) aaTATAAACCAAGATGTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAgg < 1:1283752/91‑1 (MQ=255) atatAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAggg < 2:379880/91‑1 (MQ=255) tataAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGa > 1:756261/1‑91 (MQ=255) ataAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGAt > 2:901977/1‑91 (MQ=255) aaaCCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGAttt < 2:3738528/91‑1 (MQ=255) aaaCCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGAttt > 1:1892842/1‑91 (MQ=255) aaaCCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGAttt > 2:732346/1‑91 (MQ=255) aaCCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGAtttt > 2:1781863/1‑91 (MQ=255) aaCCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTATTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGAgttt > 2:2142904/1‑91 (MQ=255) aaCCAAGATTCTCACAATTAGTAA‑TGTGAAAATCTTGG‑TTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTta > 1:1002238/1‑91 (MQ=18) aCCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTta > 2:3136506/1‑91 (MQ=255) aCCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTta < 2:1661632/91‑1 (MQ=255) aCCAAGATTCTCACAATTAGTAA‑TGTGAAAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGAtttga > 1:819584/1‑89 (MQ=21) aCCAAGATTCTCACAATTAGTAA‑TGTGAAAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTta > 1:3440359/1‑91 (MQ=21) aCCAAGATTCTCACAATTAGTAA‑TGTGAAAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTta > 1:3258251/1‑91 (MQ=21) cAAGATTCTCACAATTAGTAA‑TGTGAAAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTtata > 1:964629/1‑91 (MQ=21) aaGATTCTCACAATTAGTAA‑TGTGAAAATCTTGGTCTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTTATAg > 2:2575198/1‑91 (MQ=21) aGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTTATAGt > 2:1363444/1‑91 (MQ=255) aGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTTATAGt < 2:3300074/91‑1 (MQ=255) aGATTCTCACAATTAGTAA‑TGTGAAAATCTTGGTTTTTTTGCGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTTATAGt > 2:3003447/1‑91 (MQ=21) aTTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTTATAGtaa < 1:2390139/91‑1 (MQ=255) ttttCAC‑GTTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTTATAGtaat < 2:3510106/91‑1 (MQ=255) ttttCAC‑ATTACTAATTGTGAGAATGTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTTATAGtaat < 2:2661886/91‑1 (MQ=255) ttttCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTTATAGtaat < 1:1515142/91‑1 (MQ=255) ttttCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTTATAGtaat > 1:3400636/1‑91 (MQ=255) ttCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTTATAGtaataa > 2:3395781/1‑91 (MQ=255) cac‑aTTACTAATTGTGAGAATCTTGGTTTTTTTGTGGGTTTATGAATAATGGAAATATATATTTATCGTAAGGGATTTTATAGTAATAACt < 2:22218/91‑1 (MQ=255) cac‑aTTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTTATAGTAATAACt > 1:1051044/1‑91 (MQ=255) cac‑aTTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTTATAGTAATAACt > 1:217503/1‑91 (MQ=255) cac‑aTTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTTATAGTAATAACt < 2:2719765/91‑1 (MQ=255) cac‑aTTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTTATAGTAATAACt > 2:2822224/1‑91 (MQ=255) ac‑aTTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTTATAGTAATAACtt > 1:1251581/1‑91 (MQ=255) c‑aTTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTTATAGTAATAACttt < 1:2928046/91‑1 (MQ=255) aTTACTAATTGTGAGAATCTTGGCTTTTTTGAGGGTTTATGAACAATAGATATATATATTTATCGTAAGGGATTTTATAGTAATAACttaa < 2:3674579/91‑3 (MQ=255) tACTAATTGTGAGAAGCTTGGTTTTGATGAGGGTTTATGAATAATAGAAATATATATGTATCGTAAGGGATTTTATAGTAATAACTTTAAg < 2:3422852/91‑1 (MQ=255) aCTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTTATAGTAATAACTTTAAGt < 2:2087434/91‑1 (MQ=255) aCTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTTATAGTAATAACTTTAAGt > 1:2161120/1‑91 (MQ=255) aCTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTTATAGTAATAACTTTAAGt > 1:632754/1‑91 (MQ=255) aCTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTTATAGTAATAACTTAAAGt < 2:1420909/91‑1 (MQ=255) cgaaTTGTGAAAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTTATAGTAATAACTTTAAGtt < 2:1170823/89‑1 (MQ=255) aaTTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTTATAGTAATAACTTTAAGTTAt < 1:1944738/91‑1 (MQ=255) aaTTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATACATTTATCGTAAGGGATTTTATAGTAATAACTTTAAGTTAt < 2:1739215/91‑1 (MQ=255) aTTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTTATAGTAATAACTTTAAGTTAtt < 2:3173499/91‑1 (MQ=255) tgtgAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTTATAGTAATAACTTTAAGTTATTGt < 2:2844019/91‑1 (MQ=255) tgtgAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTTATAGTAATAACTTTAAGTTATTGt < 1:643250/91‑1 (MQ=255) gagaATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTTATAGTAATAACTTTAAGTTATTGTTCg > 1:3717501/1‑91 (MQ=255) gagaATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTTATAGTAATAACTTTAAGTTATTGTTCg < 1:432931/91‑1 (MQ=255) gagaATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTTATAGTAATAACTTTAAGTTATTGTTCg > 1:1640825/1‑91 (MQ=255) gagaATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTTATAGTAATAACTTTAAGTTATTGTTCg < 2:1765633/91‑1 (MQ=255) | ACAGATGAAATTGAGCAAGCAAATAACTAAGATGCGAGACAATTTATAGTAGAACAATATAAACCAAGATTTTCAC‑ATTACTAATTGTGAGAATCTTGGTTTTTTTGAGGGTTTATGAATAATAGAAATATATATTTATCGTAAGGGATTTTATAGTAATAACTTTAAGTTATTGTTCGT > USA300TCH1516_ALE/1421535‑1421714 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |