| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 1,430,693 | T→A | 7.3% | intergenic (+802/‑58) | ybiT → / → lysC | putative ABC transporter ATP‑binding protein YbiT/Aspartokinase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 1,430,693 | 0 | T | A | 7.3% | 751.2 / 34.7 | 227 | intergenic (+802/‑58) | ybiT/lysC | putative ABC transporter ATP‑binding protein YbiT/Aspartokinase |
| Reads supporting (aligned to +/- strand): ref base T (118/91); new base A (9/8); total (128/99) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 8.04e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.29e-01 | |||||||||||
Only 100 of 232 total aligned reads displayed.
GTTGGACTTTTTGGTTAAGAGCTGAGAGTTTGTCATTATTTAAAAATAATGGAGTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCTTTTTTTATTATTGTGTGCCCTTCCTAACAATTAGGAGGATTATATGGTAACAAGAAGTGTGTTGAAATTTGGCGG > USA300TCH1516_ALE/1430603‑1430782 | gttgGACTTTTTGGTTAAGAGCTGAGAGTTTGTCATTATTTAAAAATAATGGAGTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCAt > 1:3078379/1‑91 (MQ=255) ttgGACTTTTTGGTTAAGAGCTGAGAGTTTGTCATTATTTAAAAATAATGGAGTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCAtt < 1:261973/91‑1 (MQ=255) ggACTTTTTGGTTAAGAGCTGAGAGTTTGTCATTATTTAAATATAATGGAGTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTcc < 2:3483463/91‑1 (MQ=255) ggACTTTTTGGTTAAGAGCTGAGAGTTTGTCATTATTGAAAAAGAATGGAGTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTcc < 2:1918157/91‑1 (MQ=255) gACTTTTTGGTTAAGAGCTGAGAGTTTGTCATTATTTAAAAATAATGGAGTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCg > 2:252805/1‑91 (MQ=255) gACTTTTTGGTCAAGAGCTGAGAGTTTGTCATTATTTAAAAATAATGGAGTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCg > 2:2478572/1‑91 (MQ=255) aCTTTTTGGTTAAGAGCTGAGAGTTTGTCATTATTTAAAAATAATGGAGTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCGa > 2:1418214/1‑91 (MQ=255) cTTTTTGGTTAAGAGCTGAGAGTTTGTCATTATTTAAAAATAATGGAGTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCGaa > 1:783779/1‑91 (MQ=255) cTTTTTGGTTAAGAGCTGAGAGTTTGTCATTATTTAAAAATAATGGAGTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCGaa < 2:140693/91‑1 (MQ=255) tttGGTTAAGAGCTGAGAGTTTGTCATTATTTAAAAATAATGGAGTGCATCACTTGTATATAGATTAAGAACAAGTTCGGAATGCGAACtt < 2:1326252/91‑1 (MQ=38) ttGGTTAAGAGCTGAGAGTTTGTCATTATTTAAAAATAATGGAGTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCGAACTTg < 2:2198386/91‑1 (MQ=255) tGGTTAAGAGCTGAGAGTTTGTCATTATTTAAAAATAATGGAGTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCGAACTTGt > 1:2815260/1‑91 (MQ=255) tGGTTAAGAGCTGAGAGTTTGTCATTATTTAAAAATAATGGAGTGCATCACTTGTATATAGATTAAGAACAAGTTCGGAATGCGAACTTgc < 1:598877/91‑2 (MQ=38) ggTTAAGAGCTGAGAGTTTGTCATTATTTAAAAATAATGGAGTGCATCACTTGTATATAGATTAAGAGCAAGTTCACATTCCGAACTTGtt > 1:346749/1‑91 (MQ=255) tAAGAGCTGAGAGTTTGTCATTATTTAAAAATAATGGAGTGCATCACTTGTATCTAGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCtt > 2:3746163/1‑91 (MQ=255) tAAGAGCTGAGAGTTTGTCATTATTTAAAAATAATGGAGTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCAGAACTTGTTAtt < 2:916446/91‑1 (MQ=255) aaGAGCTGAGAGTTTGTCATTATTTAAAAATAATGGAGTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCttt > 2:1177618/1‑91 (MQ=255) aaGAGCTGAGAGTTTGTCATTATTTAAAAATAATGGAGTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCttt > 1:1128438/1‑91 (MQ=255) aaGAGCTGAGAGTTTGTCATTATTTAAAAATAATGGAGTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCttt > 2:2096031/1‑91 (MQ=255) agagCTGAGAGTTTGTCATTATTTAAAAATAATGGAGTGCATCACTTGTATATAGATTAAGAACAAGTTCGGAATGCGAACTTGCTCttaa < 2:2746430/91‑3 (MQ=25) gagCTGAGAGTTTGTCATTATTTAAAAATAAGGGAGTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCttttt < 2:1078561/91‑1 (MQ=255) gCTGAGAGTTTGTCATTATTTAAAAATAATGGAGTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCttttttt > 1:2521596/1‑91 (MQ=255) gCTGAGAGTTTGTCATTATTTAAAAATAATGGAGTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCttttttt > 1:3577118/1‑91 (MQ=255) cTGAGAGTTTGTCATTATTTAGAAATAATGGAGTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCTTTTTtta < 2:2545133/91‑1 (MQ=255) cTGAGAGTTTGTCATTATTTAAAAATAATGGAGTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCTTTTTtta < 1:730493/91‑1 (MQ=255) gagaGTTTGTCATTATTTAAAAATAATGGAGTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCTTTTTttatt > 2:3719111/1‑91 (MQ=255) gagTTTGTCATTATTTAAAAATAATGGAGTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCTTTTTTtattat > 1:883571/1‑91 (MQ=255) agTTTGTCATTATTTAAAAATAATGGAGTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCTTTTTTTattatt > 2:387522/1‑91 (MQ=255) gTTTGTCATTATTTAAAAATAATGGAGTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCTTTTTTTATTATtg < 2:2952847/91‑1 (MQ=255) tttGTCATTATTTAAAACTAATGGAGTGCATCACTTGTCTATAGATTAAGAGCAAGTTCGCCCTCCGCACTTGTTCTTTCTTTattcttca > 2:516843/1‑89 (MQ=255) ttGTCATTATTTAAAAATAATGGAGTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCTTTTTTTATTATtgtg < 1:852497/91‑1 (MQ=255) ttGTCATTATTTAAAAATAATGGAGTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCTTTTTTTATTATtgtg < 1:401500/91‑1 (MQ=255) ttGTCATTATTTAAAAATAATGGAGTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCTTTTTTTATTATtgtg < 1:872964/91‑1 (MQ=255) actccATTATTTTTAAATAATGGAGTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCTTTTTTTATTATtgtg > 1:322834/5‑91 (MQ=255) gTCATTATTTAAAAATAATGGAGTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCTTTTTTTATTATtgtgtg > 1:110692/1‑91 (MQ=255) gTCATTATTTAAAAATAATGGAGTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCTTTTTTTATTATtgtgtg < 1:2290559/91‑1 (MQ=255) tCATTATTTAAAAATAATGGAGTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCTTTTTTTATTATTGTGTGc > 1:3001622/1‑91 (MQ=255) cATTATTTAAAAATAATGGAGTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCTTTTTTTCTCATTGTGTGcc > 2:3622699/1‑91 (MQ=255) cATTATTTAAAAATAATGGAGTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCTTTTTTTATTATTGTGTGcc > 2:3150574/1‑91 (MQ=255) cATTATTTAAAAATAATGGAGTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCTTTTTTTATTATTGTGTGcc < 1:1335410/91‑1 (MQ=255) cATTATTTAAAAATAATGGAGTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCGAACTTGTTC‑TTTTTTATTATTGTGTGccc > 1:2771024/1‑91 (MQ=255) cATTATTTAAAAATAATGGAGTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCGAACTTGTTC‑TTTTTTATTATTGTGTGccc > 1:2772950/1‑91 (MQ=255) tattTAAAAATAATGGAGTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCTTTTTTTATTATTGTGTGCCCtt < 1:1859171/91‑1 (MQ=255) ttttaaaTAATGGAGTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCTTTTTTTATTATTGTGTGCCCTTCCt > 1:1195372/5‑91 (MQ=255) ttttaaaTAATGGAGTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATGCCGAACTTGGTCTTTTTTTATTATTGTGTGCCCTTCCt > 2:1879272/5‑91 (MQ=255) tttaaaTAATGGAGTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCTTTTTTTATTATTTTGTGCCCTTCCTa > 2:3652797/4‑91 (MQ=255) tttaaaTAATGGAGTGCATCACTTGTATATACATTAAGAGCAAGTTCGCATTCCGAACTTGTTCTTTTTTTATTATTGTGTGCCCTTCCTa > 2:3026282/4‑91 (MQ=255) tAAAAATAATGGAGTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCTTTTTTTATTATTGTGTGCCCTTCCTa < 2:2802769/91‑1 (MQ=255) tAAAAATAATGGAGTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCTTTTTTTATTATTGTGTGCCCTTCCTa < 2:3948070/91‑1 (MQ=255) tAAAAATAATGGAGTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCTTTTTTTATTATTGTGTGCCCTTCCTa < 1:1215339/91‑1 (MQ=255) aaaTAATGGAGTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCTTTTTTTATTATTGTGTGCCCTTCCTAACa > 2:950999/1‑91 (MQ=255) aaaTAATGGAGTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCTTTTTTTATTATTGTGTGCCCTTCCTAACa > 1:3536689/1‑91 (MQ=255) aataatGGAGTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCTTTTTTTATTATTGTGTGCCCTTCCTAACaa < 2:3537819/91‑1 (MQ=255) taatGGAGTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCTTTTTTTATTATTGTGTGCCCTTCCTAACAAtt < 2:3334080/91‑1 (MQ=255) aatGGAGTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCTTTTTTTATTATTGTGTGCCCTTCCTAACAATTa < 2:457479/91‑1 (MQ=255) aatGGAGTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCTTTTTTTATTATTGTGTGCCCTTCCTAACAATTa > 1:3952820/1‑91 (MQ=255) tGGAGTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCTTTTTTTATTATTGTGTGCCCTTCCTAACAATTagg > 2:2579041/1‑91 (MQ=255) ggAGTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCTTTTTTTATTATTGTGTGCCCTTCCTAACAATTagga < 1:2157081/91‑1 (MQ=255) ggAGTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCTTTTTTTATTATTGTGTGCCCTTCCTAACAATTagga > 1:2283371/1‑91 (MQ=255) gAGTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCTTTTTTTATTATTGTGTGCCCTTCCTAACAATTaggag > 1:1075507/1‑91 (MQ=255) gAGTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCTTTTTTTATTATTGTGTGCCCTTCCTAACAATTaggag > 2:667531/1‑91 (MQ=255) gAGTGCATCACTAGTATATAGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCTTTTTTTATTATTGTGTGCCCTTCCTAACAATTaggag > 1:2395073/1‑91 (MQ=255) tGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCTTTTTTTATTATTGTGTGCCCTTCCTAACAATTAGGAGGAt < 1:3307422/91‑1 (MQ=255) gCATCGCGTGTCTATAGATTAAGAGCAAGTTCGCATTCCGAACTTGGTCTTTTTTTATTATTGTGTGACCTTCCTAACAATTAGGAGGAtg < 2:3085634/91‑2 (MQ=255) gCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCTTTTTTTATTATTGTGTGCCCTTCCTCACAATTAGGAGGAtt > 2:794039/1‑91 (MQ=255) cATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCTTTTTTTATTATTGTGTGCCCTTCCTAACAATTAGGAGGATta > 1:1688902/1‑91 (MQ=255) aCTTGTATATAGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCTTTTTTTATTATTGTGTGCCCTTCCTAACAATTAGGAGGATTATATg > 2:2990455/1‑91 (MQ=255) aCTTGTATATAGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCTTTTTTTATTATTGTGTGCCCTTCCTAACAATTAGGAGGATTATATg > 1:387194/1‑91 (MQ=255) tatataGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCTTTTTTTATTATTGTGTGCCCTTCCTAACAATTAGGAGGATTATATGGTAAc < 1:479651/91‑1 (MQ=255) atataGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCTTTTTTTATTATTGTGTGCAATTCCTAACAATTAGGAGGATTATATGGTaata > 2:585797/1‑89 (MQ=255) ataGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCTTTTTTTATTATTGTGTGCCCTTCCTAACAATTAGGAGGATTATATGGTAACaag > 2:1800034/1‑91 (MQ=255) ataGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCTTTTTTTATTATTGTGTGCCCTTCCTAACAATTAGGAGGATTATATGGTAACaag < 2:1339460/91‑1 (MQ=255) aGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCTTTTTTTATTATTGTGTGCCCTTCCTAACACCTAGGAGGATCATATGGTAACaccaa > 2:3421138/1‑87 (MQ=255) aGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCTTTTTTTATTATTGTGTGCCCTTCCTAACAATTAGGAGGATTATATGGTCACaagaa > 1:1968940/1‑91 (MQ=255) aGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCTTTTTTTATTATTGTGTGCCCTTCCTAACAATTAGGAGGATTATATGGTAACaagaa < 1:2004323/91‑1 (MQ=255) aGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCTTTTTTTATTATTGTGTGCCCTTCCTAACAATTAGGAGGATTATATGGTAACaagaa > 2:1521261/1‑91 (MQ=255) ttAAGAGCAAGTTCGCATTCCGAACTTGTTCTTTTTTTATTATTGTGTGCCCTTCCTAACAATTAGGAGGATTATATGGTAACAAGAAgtg < 2:2316871/91‑1 (MQ=255) ttAAGAGCAAGTTCGCATTCCGAACTTGTTCTTTTTTTATTATTGTGTGCCCTTCCTAACAATTAGGAGGATTATATGGTAACAAGAAgtg > 1:1739443/1‑91 (MQ=255) tAAGAGCAAGTTCGCATTCCGAACTTGTTCTTTTTTTATTATTGTGTGCCCTTCCTAACAATTAGGAGGATTATATGGTAACAAGAAgtgt < 1:3882899/91‑1 (MQ=255) aaGAGCAAGTTCGCATTCCGAACTTGTTCTTTTTTTATTATTGTGTGCCCTTCCTAACAATTAGGAGGATTATATGGTAACAAGAAgtgtg < 1:1573459/91‑1 (MQ=255) gagCAAGTTCGCATTCCGAACTTGTTCTTTTTTTATTATTGTGTGCCCTTCCTAACAATTAGGAGGATTATATGGTAACAAGAAGTGTGtt < 1:1583019/91‑1 (MQ=255) gagCAAGTTCGCATTCCGAACTTGTTCTTTTTTTATTATTGTGTGCCCTTCCTAACAATTAGGAGGATTATATGGTAACAAGAAGTGTGtt < 1:981687/91‑1 (MQ=255) gagCAAGTTCGCATTCCGAACTTGTTCTTTTTTTATTATTGTGTGCCCTTCCTAACAATTAGGAGGATTATATGGTAACAAGAAGTGTGtt > 1:3847118/1‑91 (MQ=255) agCAAGTTCGCATTCCGAACTTGTTCTTTTTTTATTATTGTGTGCCCTTCCTAACAATTAGGAGGATTATATGGTAACAAGAAGTGTGTTg < 1:996310/91‑1 (MQ=255) agCAAGATCGCAATCCCAACTTGTTCTTTTTTTATTATTGTCTGACCTTCAAAACAAATAGGAGCATCATATGGTAACAAGAAgtgtgtag > 2:2129693/1‑89 (MQ=255) aacAAGTTCGGAATGCGAACTTGCTCTTTTTTTATTATTGTGTGCCCTTCCTAACAATTAGGAGGATTATATGGTAACAAGAAGTGTGTTg > 1:517651/3‑91 (MQ=37) aacAAGTTCGGAATGCGAACTTGCTCTTTTTTTATTATTGTGTGCCCTTCCTAACAATTAGGAGGATTATATGGTAACAAGAAGTGTGTTg > 1:336638/3‑91 (MQ=37) gCAAGTTCGCATTCCGAACTTGTTCTTTTTTTATTATTGTGTGCCCTTCCTAACAATTAGGAGGATTATATGGTAACAAGAAGTGTGTTGa < 1:1497054/91‑1 (MQ=255) gCAAGTTCGCATTCCGAACTTGTTCTTTTTTTATTATTGTGTGCCCTTCCTAACAATTAGGAGGATTATATGGTAACAAGAAGTGTGTTGa < 1:3817903/91‑1 (MQ=255) gCAAGTTCGCATTCCGAACTTGTTCTTTTTTTATTATTGTGTGCCCTTCCTAACAATTAGGAGGATTATATGGTAACAAGAAGTGTGTTGa > 2:1458384/1‑91 (MQ=255) acAAGTTCGGAATGCGAACTTGCTCTTTTTTTATTATTGTGTGCCCTTCCTAACAATTAGGAGGATTATATGGTAACAAGAAGTGTGTTGa > 1:1618548/2‑91 (MQ=38) cAAGTTCGGAATGCGAACTTGCTCTTTTTTTATTATTGTGTGCCCTTCCTAACAATTAGGAGGATTATATGGTAACAAGAAGTGTGTTGaa > 1:2509010/1‑91 (MQ=38) aaGTTCGCATTCCGAACTTGTTCTTTTTTTATTATTGTGTGCCCTTCCTAACAATTAGGAGGATTATATGGTAACAAGAAGTGTGTTGaaa < 1:805904/91‑1 (MQ=255) cGCATTCCGAACTTGTTCTTTTTTTCTTATTGTGTGCCCTTCCTCACTATTAGGAGGCTTATATGGTAACAAGAAGTCTGTTGAAAttctg > 2:2924494/1‑88 (MQ=255) cGCATTCCGAACTTGTTCTTTTTTTATTATTGTGTGCCCTTCCTAACAATTAGGAGGATTATATGGTAACAAGAAGTGTGTTGAAATTTgg > 1:2086088/1‑91 (MQ=255) cGCATTCCGAACTTGTTCTTTTTTTATTATTGTGTGCCCTTCCTAACAATTAGGAGGATTATATGGTAACAAGAAGTGTGTTGAAATTTgg > 1:2901986/1‑91 (MQ=255) gCATTCCGAACTTGTTCTTTTTTTATTATTGTGTGCCCTTCCTAACAATTAGGAGGATTATATGGTAACAAGAAGTGTGTTGAAATTTGGc > 1:3737158/1‑91 (MQ=255) cATTCCGAACTTGTTCTTTTTTTTTTATTTTGTGCCCTTCCTAACAATCAGGAGGATTATATTGTAACAAGAAGTGTGTTGAAATTTGGCg > 2:3800582/1‑91 (MQ=255) cATTCCGAACTTGTTCTTTTTTTATTATTGTGTGCCCTTCCTAACAATTAGGAGGATTATATGGTAACAAGAAGTGTGTTGAAATTTGGCg < 1:1907663/91‑1 (MQ=255) aTTCCGAACTTGTTCTTTTTTTATTATTGTGTGCCCTTCCTAACACTTAGGAGGATTATATGGTAACAAGAAGTGTGTTGAAATTTGGCgg > 1:1018762/1‑91 (MQ=255) | GTTGGACTTTTTGGTTAAGAGCTGAGAGTTTGTCATTATTTAAAAATAATGGAGTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCTTTTTTTATTATTGTGTGCCCTTCCTAACAATTAGGAGGATTATATGGTAACAAGAAGTGTGTTGAAATTTGGCGG > USA300TCH1516_ALE/1430603‑1430782 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |