| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 1,430,695 | C→G | 6.9% | intergenic (+804/‑56) | ybiT → / → lysC | putative ABC transporter ATP‑binding protein YbiT/Aspartokinase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 1,430,695 | 0 | C | G | 6.9% | 783.2 / 33.8 | 229 | intergenic (+804/‑56) | ybiT/lysC | putative ABC transporter ATP‑binding protein YbiT/Aspartokinase |
| Reads supporting (aligned to +/- strand): ref base C (121/91); new base G (8/8); total (130/99) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.10e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 232 total aligned reads displayed.
GGACTTTTTGGTTAAGAGCTGAGAGTTTGTCATTATTTAAAAATAATGGAGTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCTTTTTTTATTATTGTGTGCCCTTCCTAACAATTAGGAGGATTATATGGTAACAAGAAGTGTGTTGAAATTTGGCGGATC > USA300TCH1516_ALE/1430606‑1430785 | ggACTTTTTGGTTAAGAGCTGAGAGTTTGTCATTATTGAAAAAGAATGGAGTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTcc < 2:1918157/91‑1 (MQ=255) gACTTTTTGGTTAAGAGCTGAGAGTTTGTCATTATTTAAAAATAATGGAGTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCg < 2:48512/91‑1 (MQ=255) aCTTTTTGGTTAAGAGCTGAGAGTTTGTCATTATTTAAAAATAATGGAGTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCGa > 1:3100777/1‑91 (MQ=255) cTTTTTGGTTAAGAGCTGAGAGTTTGTCATTATTTAAAAATAATGGAGTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCGaa > 1:783779/1‑91 (MQ=255) cTTTTTGGTTAAGAGCTGAGAGTTTGTCATTATTTAAAAATAATGGAGTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCGaa > 2:3740274/1‑91 (MQ=255) cTTTTTGGTTAAGAGCTGAGAGTTTGTCATTATTTAAAAATAATGGAGTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCGaa < 1:2145456/91‑1 (MQ=255) tttGGTTAAGAGCTGAGAGTTTGTCATTATTTAAAAATAATGGAGTGCATCACTTGTATATAGATTAAGAACAAGTTCGGAATGCGAACtt < 2:2921552/91‑1 (MQ=38) ttGGTTAAGAGCTGAGAGTTTGTCATTATTTAAAAATAATGGAGTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCGAACTTg < 2:2198386/91‑1 (MQ=255) ttGGTTAAGAGCTGAGAGTTTGTCATTATTTAAAAATAATGGAGTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCGAACTTg > 2:2773898/1‑91 (MQ=255) ttGGTTAAGAGCTGAGAGTTTGTCATTATTTAAAAATAATGGAGTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCGAACTTg > 2:3039761/1‑91 (MQ=255) tGGTTAAGAGCTGAGAGTTTGTCATTATTTAAAAATAATGGAGTGCATCACTTGTATATAGATTAAGAACAAGTTCGGAATGCGAACTTgc < 1:598877/91‑2 (MQ=38) ggTTAAGAGCTGAGAGTTTGTCATTATTTAAAAATAATGGAGTGCATCACTTGTATATAGATTAAGAGCAAGTTCACATTCCGAACTTGtt > 1:346749/1‑91 (MQ=255) gTTAAGAGCTGAGAGTTTGTCATTATTTAAACATAATGGAGTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTACGAACTTGTTc > 2:3014802/1‑91 (MQ=255) tAAGAGCTGAGAGTTTGTCATTATTTAAAAATAATGGAGTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCtt > 2:2573061/1‑91 (MQ=255) tAAGAGCTGAGAGTTTGTCATTATTTAAAAATAATGGAGTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCAGAACTTGTTAtt < 2:916446/91‑1 (MQ=255) aaGAGCTGAGAGTTTGTCATTATTTAAAAATAATGGAGTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCttt > 1:3533705/1‑91 (MQ=255) aaGAGCTGAGAGTTTGTCATTATTTAAAAATAATGGAGTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCttt > 2:2096031/1‑91 (MQ=255) aaGAGCTGAGAGTTTGTCATTATTTAAAAATAATGGAGTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCttt > 1:1128438/1‑91 (MQ=255) aaGAGCTGAGAGTTTGTCATTATTTAAAAATAATGGAGTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCttt > 2:1177618/1‑91 (MQ=255) gagCTGAGAGTTTGTCATTATTTAAAAATAATGGAGTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCttttt > 2:702890/1‑91 (MQ=255) gagCTGAGAGTTTGTCATTATTTAAAAATAAGGGAGTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCttttt < 2:1078561/91‑1 (MQ=255) agCTGAGAGTTTGTCATTATTTAAAAATAATGGAGTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCtttttt < 1:2399991/91‑1 (MQ=255) agCTGAGAGTTTGTCATTATTTAAAAATAATGGAGTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCtttttt > 2:3483818/1‑91 (MQ=255) gCTGAGAGTTTGTCATTATTTAAAAATAATGGAGTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCttttttt > 1:2521596/1‑91 (MQ=255) gCTGAGAGTTTGTCATTATTTAAAAATAATGGAGTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCttttttt > 1:3577118/1‑91 (MQ=255) tGAGAGTTTGTCATTATTTAAAAATAATGGAGTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCTTTTTttat > 1:984185/1‑91 (MQ=255) tGAGAGTTTGTCATTATTTAAAAATAATGGAGTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCTTTTTttat > 2:3540917/1‑91 (MQ=255) gagaGTTTGTCATTATTTAAAAATAATGGAGTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCGAACTTGTGCTTTTTttatt < 2:665579/91‑1 (MQ=255) agagTTTGTCATTATTTAAAAATAATGGAGTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCTTTTTttatta > 1:2021198/1‑91 (MQ=255) gagTTTGTCATTATTTAAAAATAATGGAGTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCTTTTTTtattat > 1:883571/1‑91 (MQ=255) gTTTGTCATTATTTAAAAATAATGGAGTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCTTTTTTTATTATtg < 2:3450620/91‑1 (MQ=255) gTTTGTCATTATTTAAAAATAATGGAGTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCTTTTTTTATTATtg < 2:2950042/91‑1 (MQ=255) ttGTCATTATTTAAAAATAATGGAGTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCTTTTTTTATTATtgtg < 1:872964/91‑1 (MQ=255) ttGTCATTATTTAAAAATAATGGAGTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCTTTTTTTATTATtgtg < 1:401500/91‑1 (MQ=255) gTCATTATTTAAAAATAATGGAGTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCTTTTTTTATTATtgtgtg > 1:110692/1‑91 (MQ=255) tCATTATTTAAAAATAATGGAGTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCTTTTTTTATTATTGTGTGc > 1:3001622/1‑91 (MQ=255) cATTATTTAAAAATAATGGAGTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCTTTTTTTATTATTGTGTGcc < 1:1335410/91‑1 (MQ=255) cATTATTTAAAAATAATGGAGTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCTTTTTTTATTATTGTGTGcc > 2:3407072/1‑91 (MQ=255) cATTATTTAAAAATAATGGAGTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCGAACTTGTTC‑TTTTTTATTATTGTGTGccc > 1:2771024/1‑91 (MQ=255) ttattTAAAAATAATGGAGTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCTTTTTTTATTATTGTGTGCCCt > 2:1445584/1‑91 (MQ=255) tattTAAAAATAATGGAGTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCTTTTTTTATTATTGTGTGCCCtt < 1:1859171/91‑1 (MQ=255) attTAAAAATAATGGAGTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCTTTTTTTATTATTGTGTGCCCTTc < 2:812042/91‑1 (MQ=255) ttttaaaTAATGGAGTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCTTTTTTTATTATTGTGTGCCCTTCCt > 1:1195372/5‑91 (MQ=255) ttttaaaTAATGGAGTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATGCCGAACTTGGTCTTTTTTTATTATTGTGTGCCCTTCCt > 2:1879272/5‑91 (MQ=255) tttaaaTAATGGAGTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCTTTTTTTATTATTGTGTGCCCTTCCTa > 2:3652784/4‑91 (MQ=255) tttaaaTAATGGAGTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCTTTTTTTATTATTGTGTGCCCTTCCTa > 2:3652835/4‑91 (MQ=255) tAAAAATAATGGAGTGCATCACTTTTATATAGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCTTTTTTTATTATTGTGTGCCCTTCCTa > 2:1345101/1‑91 (MQ=255) tAAAAATAATGGAGTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCTTTTTTTATTATTGTGTGCCCTTCCTa < 2:3948102/91‑1 (MQ=255) tAAAAATAATGGAGTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCTTTTTTTATTATTGTGTGCCCTTCCTa < 1:1215339/91‑1 (MQ=255) aaaTAATGGAGTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCTTTTTTTATTATTGTGTGCCCTTCCTAACa > 2:950999/1‑91 (MQ=255) aaaTAATGGAGTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCTTTTTTTATTATTGTGTGCCCTTCCTAACa > 2:2533960/1‑91 (MQ=255) aataatGGACTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCTTTTTTTATTATTGTGTGCCCTTACTAACaa > 1:1967645/1‑91 (MQ=255) aatGGAGTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCTTTTTTTATTATTGTGTGCCCTTCCTAACAATTa > 1:3952820/1‑91 (MQ=255) atGGAGTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCTTTTTTTATTATTGTGTGCCCTTCCTAACAATTag > 2:1278470/1‑91 (MQ=255) tGGAGTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCTTTTTTTATTATTGTGTGCCCTTCCTAACAATTagg > 2:2420442/1‑91 (MQ=255) gAGTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCTTTTTTTATTATTGTGTGCCCTTCCTAACAATTaggag < 2:375248/91‑1 (MQ=255) gAGTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCTTTTTTTATTATTGTGTGCCCTTCCTAACAATTaggag > 1:1075507/1‑91 (MQ=255) gAGTGCATCACTAGTATATAGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCTTTTTTTATTATTGTGTGCCCTTCCTAACAATTaggag > 1:2395073/1‑91 (MQ=255) aGTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCTTTTTTTATTATTGTGTGCCCTTCCTAACAATTaggagg > 1:603085/1‑91 (MQ=255) aGTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCTTTTTTTATTATTGTGTGCCCTTCCTAACAATTaggagg < 1:851991/91‑1 (MQ=255) gTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCTTTTTTTATTATTGTGTGCCCTTCCTAACAATTAggagga > 2:3867703/1‑91 (MQ=255) gTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCTTTTTTTATTATTGTGTGCCCTTCCTAACAATTAggagga < 2:2954520/91‑1 (MQ=255) tGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCTTTTTTTATTATTGTGTGCCCTTCCTAACAATTAGGAGGAt < 1:3307422/91‑1 (MQ=255) gCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCTTTTTTTATTATTGTGTGCCCTTCCTAACAATGAGGAGGttt > 2:566720/1‑91 (MQ=255) cATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCTTTTTTTATTATTGTGTGCCCTTCCTAACAATTAGGAGGATta > 1:1688902/1‑91 (MQ=255) cATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCTTTTTTTATTATTGTGTGCCCTTCCTAACAATTAGGAGGATta > 1:441765/1‑91 (MQ=255) aTCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCTTTTTTTATTATTTTGTGCCCTTCCTAACAATTAGGAGGATtat > 2:1414950/1‑91 (MQ=255) tCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCTTTTTTTATTATTGTGTGCCCTTCCTAACAATTAGGAGGATtata > 1:2925994/1‑91 (MQ=255) aCTTGTATATAGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCTTTTTTTATTATTGTGTGCCCTTCCTAACAATTAGGAGGATTATATg > 1:387194/1‑91 (MQ=255) cTTGTATATAGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCTTTTTTTATTATTGTGTGCCCTTCCTAACAATTAGGAGGATTATATgg < 2:3100777/91‑1 (MQ=255) tGTATATAGAGTAAGAGCAAGTTCGCATTCCGAACTTGTTCTTTTTTTATTATTGTGTGCCCTTCCTAACAATTAGGAGGATTATATGGTa < 1:2260274/91‑1 (MQ=255) ataGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCTTTTTTTATTATTGTGTGCCCTTCCTAACAATTAGGAGGATTATATGGTAACaag > 2:1800034/1‑91 (MQ=255) ataGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCTTTTTTTATTATTGTGTGCCCTTCCTAACAATTAGGAGGATTATATGGTAACaag < 2:1339440/91‑1 (MQ=255) ataGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCTTTTTTTATTATTGTGTGCCCTTCCTAACAATTAGGAGGATTATATGGTAACaag > 1:2777218/1‑91 (MQ=255) ttAAGAGCAAGTTCGCATTCCGAACTTGTTCTTTTTTTATTATTGTGTGCCCTTCCTAACAATTAGGAGGATTATATGGTAACAAGAAgtg > 1:1739443/1‑91 (MQ=255) aaGAGCAAGTTCGCATTCCGAACTTGTTCTTTTTTTATTATTGTGTGCCCTTCCTAACAATTAGGAGGATTATATGGTAACAAGAAgtgtg < 1:1573459/91‑1 (MQ=255) agagCAAGTTCGCATTCCGAACTTGTTCTTTTTTTATTATTGTGTGCCCTTCCTAACAATTAGGAGGATTATATGGTAACAAGAAgtgtgt < 2:2518975/91‑1 (MQ=255) gagCAAGTTCGCATTCCGAACTTGTTCTTTTTTTATTATTGTGTGCCCTTCCTAACAATTAGGAGGATTATATGGTAACAAGAAGTGTGtt < 1:981687/91‑1 (MQ=255) gagCAAGTTCGCATTCCGAACTTGTTCTTTTTTTATTATTGTGTGCCCTTCCTAACAATTAGGAGGATTATATGGTAACAAGAAGTGTGtt < 1:289737/91‑1 (MQ=255) gagCAAGTTCGCATTCCGAACTTGTTCTTTTTTTATTATTGTGTGCCCTTCCTAACAATTAGGAGGATTATATGGTAACAAGAAGTGTGtt < 1:1583019/91‑1 (MQ=255) gagCAAGTTCGCATTCCGAACTTGTTCTTTTTTTATTATTGTGTGCCCTTCCTAACAATTAGGAGGATTATATGGTAACAAGAAGTGTGtt > 1:3847118/1‑91 (MQ=255) agCAAGTTCGCATTCCGAACTTGTTCTTTTTTTATTATTGTGTGCCCTTCCTAACAATTAGGAGGATTATATGGTAACAAGAAGTGTGTTg < 2:3221315/91‑1 (MQ=255) agCAAGATCGCAATCCCAACTTGTTCTTTTTTTATTATTGTCTGACCTTCAAAACAAATAGGAGCATCATATGGTAACAAGAAgtgtgtag > 2:2129693/1‑89 (MQ=255) aacAAGTTCGGAATGCGAACTTGCTCTTTTTTTATTATTGTGTGCCCTTCCTAACAATTAGGAGGATTATATGGTAACAAGAAGTGTGTTg > 1:336638/3‑91 (MQ=37) aacAAGTTCGGAATGCGAACTTGCTCTTTTTTTATTATTGTGTGCCCTTCCTAACAATTAGGAGGATTATATGGTAACAAGAAGTGTGTTg > 1:517651/3‑91 (MQ=37) gCAAGTTCGCATTCCGAACTTGTTCTTTTTTTATTATTGTGTGCCCTTCCTAACAATTAGGAGGATTATATGGTAACAAGAAGTGTGTTGa < 1:1497054/91‑1 (MQ=255) acAAGTTCGGAATGCGAACTTGCTCTTTTTTTATTATTGTGTGCCCTTCCTAACAATTAGGAGGATTATATGGTAACAAGAAGTGTGTTGa > 1:1618548/2‑91 (MQ=38) cAATTTCGGAATGCGAACTGGTTCTATTTTTACAATTGTGTGCCCTTCCTAACAATTTGGAGGATTATATGTTAACAACATGGGTGTTGaa > 2:3883079/1‑91 (MQ=255) aaGTTCGGAATGCGAACTTGCTCTTTTTTTTTTATTGTGTGCCCTTCCTAACAATTAGGAGGATTATATGGTAACAAGAAGTGTGTTGaaa > 2:2681082/1‑91 (MQ=38) aaGTTCGCATTCCGAACTTGTTCTTTTTTTATTATTGTGTGCCCTTCCTAACAATTAGGAGGATTATATGGTAACAAGAAGTGTGTTGaaa > 1:3879714/1‑91 (MQ=255) aaGTTCGCATTCCGAACTTGTTCTTTTTTTATTATTGTGTGCCCTTCCTAACAATTAGGAGGATTATATGGTAACAAGAAGTGTGTTGaaa < 1:805904/91‑1 (MQ=255) ttCGCATTCCGAACTTGTTCTTTTTTTATTATTGTGTGCCCTTCCTAACAATTAGGAGGATTATATGGTAACAAGAAGTGTGTTGAAAttt < 1:3282108/91‑1 (MQ=255) cGCATTCCGAACTTGTTCTTTTTTTATTATTGTGTGCCCTTCCTAACAATTAGGAGGATTATATGGTAACAAGAAGTGTGTTGAAATTTgg > 1:1973436/1‑91 (MQ=255) gCATTCCGAACTTGTTCTTTTTTTATTATTGTGTGCCCTTCCTAACAATTAGGAGGATTATATGGTAACAAGAAGTGTGTTGAAATTTGGc > 1:2754911/1‑91 (MQ=255) gCATTCCGAACTTGTTCTTTTTTTATTATTGTGTGCCCTTCCTAACAATTAGGAGGATTATATGGTAACAAGAAGTGTGTTGAAATTTGGc > 1:3737158/1‑91 (MQ=255) cATTCCGAACTTGTTCTTTTTTTATTATTGTGTGCCCTTCCTAACAATTAGGAGGATTATATGGTAACAAGAAGTGTGTTGAAATTTGGCg < 1:2288295/91‑1 (MQ=255) aTTCCGAACTTGTTCTTTTTTTATTATTGTGTGCCCTTCCTAACACTTAGGAGGATTATATGGTAACAAGAAGTGTGTTGAAATTTGGCgg > 1:1018762/1‑91 (MQ=255) aTTCCGAACTTGTTCTTTTTTTATTATTGTGTGCCCTTCCTAACAATTAGGAGGATTATATGGTAACAAGAAGTGTGTTGAAATTTGGCgg < 1:379752/91‑1 (MQ=255) aTTCCGAACTTGTTCTTTTTTTATTATTGTGTGCCCTTCCTAACAATTAGGAGGATTATATGGTAACAAGAAGTGTGTTGAAATTTGGCgg < 2:1463591/91‑1 (MQ=255) ccGAACTTGTTCTTTTTTTATTATTGTGTGCCCTTCCTAACAATTAGGAGGATTATATGGTAACAAGAAGTGTGTTGAAATTTGGCGGatc < 2:1529314/91‑1 (MQ=255) | GGACTTTTTGGTTAAGAGCTGAGAGTTTGTCATTATTTAAAAATAATGGAGTGCATCACTTGTATATAGATTAAGAGCAAGTTCGCATTCCGAACTTGTTCTTTTTTTATTATTGTGTGCCCTTCCTAACAATTAGGAGGATTATATGGTAACAAGAAGTGTGTTGAAATTTGGCGGATC > USA300TCH1516_ALE/1430606‑1430785 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |