| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 1,779,807 | A→G | 8.3% | intergenic (‑113/+29) | USA300TCH1516_01664 ← / ← rplT | hypothetical protein/50S ribosomal protein L20 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 1,779,807 | 0 | A | G | 8.3% | 759.1 / 40.0 | 262 | intergenic (‑113/+29) | USA300TCH1516_01664/rplT | hypothetical protein/50S ribosomal protein L20 |
| Reads supporting (aligned to +/- strand): ref base A (104/135); new base G (11/11); total (116/146) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.55e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 268 total aligned reads displayed.
TGTTTGTTCTCTTAAATGCATTTTAGCAAATATGTCATATTTTAGCGATTAAATGTGGCATTTTGCTATTTAAAAAATAAAAAAGAGATGACAATGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCATCTTTAGCTTTAGTTACTAATTGAGCAAATGCTTTTTCGTCAGAAATTG > USA300TCH1516_ALE/1779717‑1779897 | tgtttgttCTCTTAAATGCATTTTAGCAAATATGTCATATTTTAGCGATTAAATGTGGCATTTTGCTATTTAAAAAATAAAAAAGAGATGa > 2:3733635/1‑91 (MQ=255) gtttgttCTCTTAAATGCATTTTAGCAAATATGTCATATTTTAGCGATTAAATGTGGCATTTTGCTATTTAAAAAATAAAAAAGAGATGAc > 1:3532513/1‑91 (MQ=255) tttgttCTCTTAAATGCATTTTAGCAAATATGTCATATTTTAGCGATTAAATGTGGCATTTTGCTATTTAAAAAATAAAAAAGAGATGACa < 1:3191664/91‑1 (MQ=255) ttgttCTCTTAAATGCATTTTAGCAAATATGTCATATTTTAGCGATTAAATGTGGCATTTTGCTATTTAAAAAATAAAAAAGAGATGACaa < 2:1313968/91‑1 (MQ=255) tgttCTCTTAAATGCATTTTAGCAAATATGTCATATTTTAGCGATTAAATGTGGCATTTTGCTATTTAAAAAATAAAAAAGAGATGACAAt > 1:75652/1‑91 (MQ=255) gttCTCTTAAATGCATTTTAGCAAATATGTCATATTTTAGCGATTAAATGTGGCATTTTGCTATTTAAAAAATAAAAAAGAGATGACAATg < 1:913120/91‑1 (MQ=255) gttCTCTTAAATGCATTTTAGCAAATATGTCATATTTTAGCGATTAAATGTGGCATTTTGCTATTTAAAAAATAAAAAAGAGATGACAATg > 1:587987/1‑91 (MQ=255) ctctTAAATGCATTTTAGCAAATATGTCATATTTTAGCGATTAAATGTGGCATTTTGCTATTTAAAAAATAAAAAAGAGATGACAATGCCa > 1:2640398/1‑91 (MQ=255) ctctTAAATGCATTTTAGCAAATATGTCATATTTTAGCGATTAAATGTGGCATTTTGCTATTTAAAAAATAAAAAAGAGATGACAATGCCa < 1:960943/91‑1 (MQ=255) ctctTAAATGCATTTTAGCAAATATGTCATATTTTAGCGATTAAATGTGGCATTTTGCTATTTAAAAAATAAAAAAGAGATGACAATGCCa < 2:1740607/91‑1 (MQ=255) ctctTAAATGCATTTTAGCAAATATGTCATATTTTAGCGATTAAATGTGGCATTTTGCTATTTAAAAAATAAAAAAGAGATGACAATGCCa < 1:2078786/91‑1 (MQ=255) cgctTAAATGCATTTTAGCAAATATGTCATATTTTAGCGATTAAATGTGGCATTTTGCTATTTAAAAAATAAAAAAGAGATGACAATGCCa < 2:1542579/89‑1 (MQ=255) tctTAAATGCATTTTAGCAAATATGTCATATTTTAGCGATTAAATGTGGCATTTTGCTATTTAAAAAATAAAAAAGAGATGACAATGCCAt < 2:24728/91‑1 (MQ=255) ttAAATGCATTTTAGCAAATATGTCATATTTTAGCGATTAAATGTGGCATTTTGCTATTTAAAAAATAAAAAAGAGATGACAATGCCAtct > 1:1942701/1‑91 (MQ=255) ttAAATGCATTTTAGCAAATATGTCATATTTTAGCGATTAAATGTGGCATTTTGCTATTTAAAAAATAAAAAAGAGATGACAATGCCAtct > 1:2544741/1‑91 (MQ=255) tAAATGCATTTTAGCAAATATGTCATATTTTAGCGATTAAATGTGGCATTTTGCTATTTAAAAAATAAAAAAGAGATGGCATTGTCAtctc < 2:775904/91‑1 (MQ=38) aaaTGCATTTTAGCAAATATGTCATATTTTAGCGATTAAATGTGGCATTTTGCTATTTAAAAAATAAAAAAGAGATGGCATTGTCATctct < 1:3605365/91‑1 (MQ=38) aaTGCATTTTAGCAAATATGTCATATTTTAGCGATTAAATGTGGCATTTTGCTATTTAAAAAATAAAAAAGAGATGACAATGCCATCTCtt > 1:3313621/1‑91 (MQ=255) aTGCATTTTAGCAAATATGTCATATTTTAGCGATTAAATGTGGCATTTTGCTATTTAAAAAATAAAAAAGAGATGACAATGCCATCTCttt < 2:622779/91‑1 (MQ=255) aTGCATATTAGCAAATATGTCATATTTTAGCGATTAAATGTGGCATTTTGCTATTTAAAAAATAAAAAAGAGATGACAATGCCATCTCttt < 2:740124/91‑1 (MQ=255) tGCATTTTAGCAAATATGTCATAGTTTAGCGATTAAATGTGGCATTTTGCTATTTAAAAAATAAAAAAGAGATGGCATTGTCATCTCtttt < 2:3946953/91‑1 (MQ=37) cATTTTAGCAAATATGTCATATTTTAGCGATTAAATGTGGCATTTTGCTATTTAAAAAATAAAAAAGAGATGACAATGCCATCTCtttttt > 2:1250174/1‑91 (MQ=255) cATTTTAGCAAATATGTCATATTTTAGCGATTAAATGTGGCATTTTGCTATTTAAAAAATAAAAAAGAGATGACAATGCCATCTCtttttt < 2:2530462/91‑1 (MQ=255) cATTTTAGCAAATATGTCATATTTTAGCGATTAAATGTGGCATTTTGCTATTTAAAAAATAAAAAAGAGATGACAATGCCATCTCtttttt > 1:2199445/1‑91 (MQ=255) aTTTTAGCAAATATGTCATATTTTAGCGATTAAATGTGGCATTTTGCTATTTAAAAAATAAAAAAGAGATGGCATTGTCATCTCTTTTTta < 1:2331572/91‑1 (MQ=37) tAGCAAATATGTCATATTTTAGCGATTAAATGTGGCATTTTGCTATTTAAAAAATAAAAAAGAGATGACAATGCCATCTCTTTTTTATAAg > 1:2503311/1‑91 (MQ=255) tAGCAAATATGTCATATTTTAGCGATTAAATGTGGCATTTTGCTATTTAAAAAATAAAAAAGAGATGACAATGCCATCTCTTTTTTATAAg < 1:860796/91‑1 (MQ=255) aGCAAATATGTCATATTTTAGCGATTAAATGTGGCATTTTGCTATTTAAAAAATAAAAAAGAGATGACAATGCCATCTCTTTTTTATAAgt < 1:723500/91‑1 (MQ=255) cAAATATGTCATATTTTAGCGATTAAATGTGGCATTTTGCTATTTAAAAAATAAAAAAGAGATGACAATGCCATCTCTTTTTTATAAgtgt < 2:313595/91‑1 (MQ=255) cAAATATGTCATATTTTAGCGATTAAATGTGGCATTTTGCTATTTAAAAAATAAAAAAGAGATGACAATGCCATCTCTTTTTTATAAgtgt > 1:435678/1‑91 (MQ=255) atatGTCATATTTTAGCGATTAAATGTGTCATTATACAATTAAAAAAATAAAAAAGAGATGACAATGCCATCTCTTTTTTATAAGTGttat < 2:3900738/91‑1 (MQ=38) atatGTCATATTTTAGCGATTAAATGTGGCATTTTGCTATTTAAAAAATAAAAAAGAGATGACAATGCCATCTCTTTTTTATAAGTGttat < 2:2031237/91‑1 (MQ=255) gTCATATTTTAGCGATTAAATGTGGCATTTTGCTATTTAAAAAATAAAAAAGAGATGACAATGCCATCTCTTTTTTATAAGTGTTattatt > 2:1051192/1‑91 (MQ=255) tCATATTTTAGCGATTAAATGTGGCATTTTGCTATTTAAAAAATAAAAAAGAGATGACAATGCCATCTCTTTTTTATAAGTGTTATTAttt < 2:2491558/91‑1 (MQ=255) tCATATTTTAGCGATTAAATGTGGCATTTTGCTATTTAAAAAATAAAAAAGAGATGACAATGCCATCTCTTTTTTATAAGTGTTATTAttt > 1:1804101/1‑91 (MQ=255) cATATTTTAGCGATTAAATGTGGCATTTTGCTATTTAAAAAATAAAAAAGAGATGACTATGCCATCTCTTTTTTATAAGTGTTATTAtttt > 2:3409683/1‑91 (MQ=255) atatTTTAGCGATTAAATGTGGCATTTTGCTATTTAAAAAATAAAAAAGAGATGACAATGCCATCTCTTTTTTATAAGTGTTATTATTTTa < 2:2782697/91‑1 (MQ=255) tatTTTAGCGATTAAATGTGGCATTTTGCTATTTAAAAAATAAAAAAGAGATGACAATGCCATCTCTTTTTTATAAGTGTTATTATTTTaa > 2:1843693/1‑91 (MQ=255) ttttAGCGATTAAATGTGGCATTTTGCTATTTAAAAAATAAAAAAGAGATGACAATGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAg < 2:33520/91‑1 (MQ=255) ttttAGCGATTAAATGTGGCATTTTGCTATTTAAAAAATAAAAAAGAGATGACAATGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAg < 1:2113468/91‑1 (MQ=255) ttAGAGATTAAATGTGGCATTTTGCTATTTAAAAAATAAAAAAGAGATGACAATGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCa < 2:2515500/91‑1 (MQ=255) tAGCGATTAAATGTGGCATTTTGCTATTTAAAAAATAAAAAAGAGATGACAATGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCAt < 1:363472/91‑1 (MQ=255) aGCGATTAAATGTGGCATTTTGCTATTTAAAAAATAAAAAAGAGATGACAATGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCATc < 1:1862083/91‑1 (MQ=255) gCGATTAAATGTGGCATTTTGCTATTTAAAAAATAAAAAAGAGATGACAATGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCATct > 2:1630377/1‑91 (MQ=255) gCGATTAAATGTGGCATTTTGCTATTTAAAAAATAAAAAAGAGATGACAATGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCATct > 1:1069746/1‑91 (MQ=255) gCGATTAAATGTGGCATTTTGCTATTTAAAAAATAAAAAAGAGATGACAATGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCATct > 1:623081/1‑91 (MQ=255) aTTAAATGTGGCATTTTGCTATTTAAAAAATAAAAAAGAGATGACCATGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCATcttta > 2:2947589/1‑91 (MQ=255) tAAATGTGGCATTTTGCTATTTAAAAAATAAAAAAGAGATGACAATGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCATctttagc < 1:693124/91‑1 (MQ=255) tgtgGCATTTTGCTATTTAAAAAATAAAAAAGAGATGACAATGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCATctttagcttta > 1:1510145/1‑91 (MQ=255) ggCATTTTGCTATTTAAAAAATAAAAAAGAGATGACAATGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCATCTTTAGCTTTAGtt > 2:3218884/1‑91 (MQ=255) ggCATTTTGCTATTTAAAAAATAAAAAAGAGATGACAATGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCATCTTTAGCTTTAGtt < 2:1796606/91‑1 (MQ=255) gCATTTTGCTATTTAAAAAATAAAAAAGAGATGACAATGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCATCTTTAGCTTTAGTTa < 2:2910546/91‑1 (MQ=255) gCATTTTGCTATTTAAAAAATAAAAAAGAGATGACAATGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCATCTTTAGCTTTAGTTa < 1:1738918/91‑1 (MQ=255) gCATTTTGCTATTTAAAAAATAAAAAAGAGATGACAATGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCATCTTTAGCTTTAGTTa > 2:447955/1‑91 (MQ=255) cATTTTGCTATTTAAAAAATAAAAAAGAGATGACAATGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCATCTTTAGCTTTAGTTAc < 2:682000/91‑1 (MQ=255) cATTTTGCTATTTAAAAAATAAAAAAGAGATGACAATGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCATCTTTAGCTTTAGTTAc < 2:2853701/91‑1 (MQ=255) cATTTTGCTATTTAAAAAATAAAAAAGAGATGACAATGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCATCTTTAGCTTTAGTTAc < 1:896827/91‑1 (MQ=255) cATTTTGCTATTTAAAAAATAAAAAAGAGATGACAATGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCATCTTTAGCTTTAGTTAc < 2:3771156/91‑1 (MQ=255) aTTTTGCTATTTAAAAAATAAAAAAGAGATGACAATGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCATCTTTAGCTTTAGTTACt > 2:382132/1‑91 (MQ=255) aTTTTGCTATTTAAAAAATAAAAAAGAGATGACAATGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCATCTTTAGCTTTAGTTACt > 1:2379827/1‑91 (MQ=255) ttttGCTATTTAAAAAATAAAAAAGAGATGACAATGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCATCTTTAGCTTTAGTTACTa > 2:1956893/1‑91 (MQ=255) ttttGCTATTTAAAAAATAAAAAAGAGATGACAATGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCATCTTTAGCTTTAGTTACTa > 2:3252072/1‑91 (MQ=255) ttGCTATTTAAAAAATAAAAAAGAGATGACAATGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCATCTTTAGCTTTAGTTACTAAt < 2:3464360/91‑1 (MQ=255) gCTATTTAAAAAATAAAAAAGAGATGACAATGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCATCTTTAGCTTTAGTTACTAATTg > 2:71957/1‑91 (MQ=255) gCTATTTAAAAAATAAAAAAGAGATGACAATGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCATCTTTAGCTTTAGTTACTAATTg > 2:3778303/1‑91 (MQ=255) acTATTTAAAAAATAAAAAAGAGATGACAATGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCATCTTTAGCTTTAGTTACTAATTg < 2:2429875/90‑1 (MQ=255) cTATTTAAAAAATAAAAAAGAGATGACAATGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCATCTTTAGCTTTAGTTACTAATTGa > 1:504684/1‑91 (MQ=255) cTATTTAAAAAATAAAAAAGAGATGACAATGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCATCTTTAGCTTTAGTTACTAATTGa < 1:3088208/91‑1 (MQ=255) tATTTAAAAAATAAAAAAGAGATGACAATGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCATCTTTAGCTTTAGTTACTAATTGAg < 1:386628/91‑1 (MQ=255) tttAAAAAATAAAAAAGAGATGACAATGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCATCTTTAGCTTTAGTTACTAATTGAGCa < 2:1118927/91‑1 (MQ=255) ttAAAAAATAAAAAAGAGATGACAATGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCATCTTTAGCTTTAGTTACTAATTGAGCaa < 1:2731211/91‑1 (MQ=255) ttAAAAAATAAAAAAGAGATGACAATGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCATCTTTAGCTTTAGTTACTAATTGAGCaa > 2:2120208/1‑91 (MQ=255) taaaaaataaaaaaGAGATGACAATGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCATCTTTAGCTTTAGTTACTAATTGAGCaaa < 1:2020779/91‑1 (MQ=255) aaaaataaaaaaGAGATGACAATGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCATCTTTAGCTTTAGTTACTAATTGAGCAAATg < 1:1604276/91‑1 (MQ=255) aaaataaaaaaGAGATGACAATGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCATCTTTAGCTTTAGTTACTCATTGAGCAAATGc > 2:891158/1‑91 (MQ=255) aaaaGAGATGACAATGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCATCTTTAGCTTTAGTTACTAATTGAGCAAATGCTTTTTCg > 1:1559833/1‑91 (MQ=255) aaaaGAGATGACAATGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCATCTTTAGCTTTAGTTACTAATTGAGCAAATGCTTTTTCg < 2:1582376/91‑1 (MQ=255) aaaGAGATGGCATTGTCATCTCTTTTTTATAAGTGTTATTATTTTCAAGCATCTTTAGCTTTAGTTACTAATTGAGCAAATGCTTTTTTGt > 2:3656035/1‑91 (MQ=37) aaaGAGATGGCATTGTCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCATCTTTAGCTTTAGTTACTAATTGAGCAAATGCTTTTTCGt > 2:2566618/1‑91 (MQ=38) aaaGAGATGGCATTGTCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCATCTTTAGCTTTAGTTACTAATTGAGCAAATGCTTTTTCGt > 1:2302173/1‑91 (MQ=38) aaaGAGATGACAATGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCATCTTTAGCTTTAGTTACTAATTGAGCAAATGCTTTTTCGt < 2:200768/91‑1 (MQ=255) aaaGAGATGACAATGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCATCTTTAGCTTTAGTTACTAATTGAGCAAATGCTTTTTCGt > 2:3568851/1‑91 (MQ=255) aaaGAGATGACAATGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCATCTTTAGCTTTAGTTACTAATTGAGCAAATGCTTTTTCGt < 1:922434/91‑1 (MQ=255) aaGAGATGGCATTGTCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCATCTTTAGCTTTAGTTACTAATTGAGCAAATGCTTTTTCGTc > 1:2804244/1‑91 (MQ=38) agagATGGCATTGTCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCATCTTTAGCTTTAGTTACTAATTGAGCAAATGCTTTTTCGTCa > 1:706257/1‑91 (MQ=38) gagaTGACAATGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCATCTTTAGCTTTAGTTACTAATTGAGCAAATGCTTTTTCGTCAg < 2:665519/91‑1 (MQ=255) gaTGACAATGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCATCTTTAGCTTTAGTTACTAATTGAGCAAATGCTTTTTCGTCAGaa > 2:2074328/1‑91 (MQ=255) aTGACAATGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCATCTTTAGCTTTAGTTACTAATTGAGCAAATGCTTTTTCGTCAGaaa > 1:1233275/1‑91 (MQ=255) aTGACAATGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCATCTTTAGCTTTAGTTACTAATTGAGCAAATGCTTTTTCGTCAGaaa < 2:2674566/91‑1 (MQ=255) aTGACAATGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCATCTTTAGCTTTAGTTACTAATTGAGCAAATGCTTTTTCGTCAGaaa < 1:2915164/91‑1 (MQ=255) aTGACAATGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCATCTTTAGCTTTAGTTACTAATTGAGCAAATGCTTTTTCGTCAGaaa < 1:29905/91‑1 (MQ=255) tGACAATGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCATCTTTAGCTTTAGTTACTAATTGAGCAAATGCTTTTTCGTCAGAAAt < 1:40306/91‑1 (MQ=255) tGACAATGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCATCTTTAGCTTTAGTTACTAATTGAGCAAATGCTTTTTCGTCAGAAAt < 1:2462976/91‑1 (MQ=255) tGACAATGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCATCTTTAGCTTTAGTTACTAATTGAGCAAATGCTTTTTCGTCAGAAAt < 2:1978058/91‑1 (MQ=255) tGACAATGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCATCTTTAGCTTTAGTTACTAATTGAGCAAATGCTTTTTCGTCAGAAAt > 1:1949789/1‑91 (MQ=255) tGACAATGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCATCTTTAGCTTTAGTTACTAATTGAGCAAATGCTTTTTCGTCAGAAAt < 2:2189165/91‑1 (MQ=255) tGAAAATGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCATCTTTAGCTTTAGCTACTAATTGAGCAAATGCTTTTTCGCCAGaact > 2:3503086/1‑89 (MQ=255) gACAATGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCATCTTTAGCTTTAGTTACTAATTGAGCAAATGCTTTTTCGTCAGAAAtt < 1:3403662/91‑1 (MQ=255) aCAATGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCATCTTTAGCTTTAGTTACTCATTGAGCAAATGCTTTTTCGTCAGACATTg > 2:2992734/1‑91 (MQ=255) aCAATGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCATCTTTAGCTTTAGTTACTAATTGAGCAAATGCTTTTTCGTCAGAAATTg > 1:3764937/1‑91 (MQ=255) | TGTTTGTTCTCTTAAATGCATTTTAGCAAATATGTCATATTTTAGCGATTAAATGTGGCATTTTGCTATTTAAAAAATAAAAAAGAGATGACAATGCCATCTCTTTTTTATAAGTGTTATTATTTTAAAGCATCTTTAGCTTTAGTTACTAATTGAGCAAATGCTTTTTCGTCAGAAATTG > USA300TCH1516_ALE/1779717‑1779897 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |