Predicted mutation
evidence seq id position mutation freq annotation gene description
RA USA300TCH1516_ALE 1,850,932 T→A 7.1% H224L (CAT→CTT)  acsA_1 ← Acetyl‑coenzyme A synthetase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*USA300TCH1516_ALE1,850,9320TA 7.1% 558.8 / 24.5 168H224L (CAT→CTT) acsA_1Acetyl‑coenzyme A synthetase
Reads supporting (aligned to +/- strand):  ref base T (76/80);  new base A (10/2);  total (86/82)
Fisher's exact test for biased strand distribution p-value = 3.26e-02
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.12e-01

Only 100 of 171 total aligned reads displayed.

GGATCTGCTGTACACCAATAAACATCATCTTCTTGTAAATCTAATACATATTTTCCAGAAATATAGTGCACTAACATTGCTTGTTGAACATGCAATACACCTTTAGGTTGCCCAGTAGAACCTGATGTATAATGTAAAATCAAACCATCATCCGACTTTAACCATTCAATGTCAAATTCAT  >  USA300TCH1516_ALE/1850842‑1851022
                                                                                          |                                                                                          
ggATCTGCTGTACACCAATAAACATCATCTTCTTGTAAATCTAATACATATTTTCCAGAAATATAGTGCACTAACATTGCTTGTTGAACAt                                                                                            >  1:695004/1‑91 (MQ=255)
  aTCTGCTGTACACCAATAAACATCATCTTCTTGTAAATCTAATACATATTTTCCAGAAATATAGTGCACTAACATTGCTTGTTGAACATGc                                                                                          >  1:2380265/1‑91 (MQ=255)
   tCTGCTGTACACCAATAAACATCATCTTCTTGTAAATCTAATACATATTTTCCAGAAATATAGTGCACTAACATTGCTTGTTGAACATGCa                                                                                         <  2:2118701/91‑1 (MQ=255)
   tCTGCTGTACACCAATAAACATCATCTTCTTGTAAATCTAATACATATTTTCCAGAAATATAGTGCACTAACATTGCATGTTCAACAAGCa                                                                                         <  1:3436521/91‑1 (MQ=255)
   tCTGCTGTACACCAATAAACATCATCTTCTTGTAAATCTAATACATATTTTCCAGAAATATAGTGCACTAACATTGCATGTTCAACAAGCa                                                                                         <  2:2343383/91‑1 (MQ=255)
    ctgctgTACACCAATAAACATCATCTTCTTGTAAATCTAATACATATTTTCCAGAAATATAGTGCACTAACATTGCTTGTTGAACATGCaa                                                                                        >  2:858225/1‑91 (MQ=255)
     tgctgTACACCAATAAACATCATCTTCTTGTAAATCTAATACATATTTTCCAGAAATATAGTGCACTAACATTGCTTGTTGAACATGCAAt                                                                                       <  1:1843075/91‑1 (MQ=255)
     tgctgTACACCAATAAACATCATCTTCTTGTAAATCTAATACATATTTTCCAGAAATATAGTGCACTAACATTGCTTGTTGAACATGCAAt                                                                                       <  2:1608636/91‑1 (MQ=255)
      gctgTACACCAATAAACATCATCTTCTTGTAAATCTAATACATATTTTCCAGAAATATAGTGCACTAACATTGCTTGTTGAACATGCAATa                                                                                      <  2:2338057/91‑1 (MQ=255)
       ctgTACACCAATAAACATCATCTTCTTGTAAATCTAATACATATTTTCCAGAAATATAGTGCACTAACATTGCTTGTTGAACATGCAATac                                                                                     >  1:2150922/1‑91 (MQ=255)
        tgTACACCAATAAACATCATCTTCTTGTAAATCTAATACATATTTTCCAGAAATATAGTGCACTAACATTGCTTGTTGAACATGCAATaca                                                                                    >  1:1286788/1‑91 (MQ=255)
        tgTACACCAATAAACATCATCTTCTTGTAAATCTAATACATATTTTCCAGAAATATAGTGCACTAACATTGCTTGTTGAACATGCAATaca                                                                                    <  1:2236064/91‑1 (MQ=255)
            cacCAATAAACATCATCTTCTTGTAAATCTAATACATATTTTCCAGAAATATAGTGCACTAACATTGCTTGTTGAACATGCAATACACCtt                                                                                <  2:3773632/91‑1 (MQ=255)
            cacCAATAAACATCATCTTCTTGTAAATCTAATACATATTTTCCAGAAATATAGTGCACTAACATTGCTTGTTGAACATGCAATACACCtt                                                                                <  1:116283/91‑1 (MQ=255)
             acCAATAAACATCATCTTCTTGTAAATCTAATACATATTTTCCAGAAATATAGTGCACTAACATTGCTTGTTGAACATGCAATACACCttt                                                                               <  1:3740729/91‑1 (MQ=255)
                aaTAAACATCATCTTCTTGTAAATCTAATACATATTTTCCAGAAATATAGTGCACTAACATTGCTTGTTGAACATGCAATACACCTTTAgg                                                                            <  1:2199834/91‑1 (MQ=255)
                aaTAAACATCATCTTCTTGTAAATCTAATACATATTTTCCAGAAATATAGTGCACTAACATTGCTTGTTGAACATGCAATACACCTTTAgg                                                                            >  1:460971/1‑91 (MQ=255)
                aaTAAACATCATCTTCTTGTAAATCTAATACATATTTTCCAGAAATATAGTGCACTAACATTGCTTGTTGAACATGCAATACACCTTTAgg                                                                            >  2:616696/1‑91 (MQ=255)
                aaTAAACATCATCTTCTTGTAAATCTAATACATATTTTCCAGAAATATAGTGCACTAACATTGCTTGTTGAACATGCAATACACCTTTAgg                                                                            <  2:397494/91‑1 (MQ=255)
                   aaaCATCATCTTCTTGTCAATCTAATACATATTTTCCAGAAATATAGTGCACTAACATTGCTTGTTGAACATGCAATACACCTTTAGGTTg                                                                         <  1:3389070/91‑1 (MQ=255)
                   aaaCATCATCTTCTTGTAAATCCAATACCTATTTCCCAGAAATATAGTGCACTAACATTGCTTGTTGCACATGCAATACAACTCTAGGTTg                                                                         >  2:3403790/1‑91 (MQ=255)
                      catcatCTTCTTGTAAATCTAATACATATTTTCCAGAAATATAGTGCACTAACATTGCTTGTTGAACATGCAATACACCTTTAGGTTGccc                                                                      >  1:1942177/1‑91 (MQ=255)
                       atcatcTTCTTGTAAATCTAATACATATTTTCCAGAAATATAGTGCACTAACATTGCTTGTTGAACATGCAATACACCTTTAGGTTGCCCa                                                                     <  2:1324865/91‑1 (MQ=255)
                       atcatcTTCTTGTAAATCTAATACATATTTTCCAGAAATATAGTGCACTAACATTGCTTGTTGAACATGCAATACACCTTTAGGTTGCCCa                                                                     >  1:101638/1‑91 (MQ=255)
                        tcatcTTCTTGTAAATCTAATACATATTTTCCAGAAATATAGTGCACTAACATTGCTTGTTGAACATGCAATACACCTTTAGGTTGCCCAg                                                                    >  1:2272524/1‑91 (MQ=255)
                         catcTTCTTGTAAATCTAATACATATTTTCCAGAAATATAGTGCACTAACATTGCTTGTTGAACATGCAATACACCTTTAGGTTGCCCAGt                                                                   >  1:2600171/1‑91 (MQ=255)
                         catcTTCTTGTAAATCTAATACATATTTTCCAGAAATATAGTGCACTAACATTGCTTGTTGAACATGCAATACACCTTTAGGTTGCCCAGt                                                                   <  1:2501244/91‑1 (MQ=255)
                         catcTTCTTGTAAATCTAATACATATTTTCCAGAAATATAGTGCACTAACATTGCTTGTTGAACATGCAATACACCTTTAGGTTGCCCAGt                                                                   >  1:1151389/1‑91 (MQ=255)
                          atcTTCTTGTAAATCTAATACATATTTTCCAGAAATATAGTGCACTAACATTGCTTGTTGAACATGCAATACACCTTTAGGCTGCCCAGTa                                                                  >  2:3927598/1‑91 (MQ=255)
                             ttcttGTAAATCTAATACATATTTTCCAGAAATATAGTGCACTAACATTGCTTGTTGAACATGCAATACACCTTTAGGTTGCCCAGTAGaa                                                               >  2:1838883/1‑91 (MQ=255)
                              tcttGTAAATCTAATACATATTTTCCAGAAATATAGTGCACTAACATTGCTTGTTGAACATGCAATACACCTTTAGGTTGCCCAGTAGAAc                                                              <  2:573166/91‑1 (MQ=255)
                              tcttGTAAATCTAATACATATTTTCCAGAAATATAGTGCACTAACATTGCTTGTTGAACATGCAATACACCTTTAGGTTGCCCAGTAGAAc                                                              >  2:1512866/1‑91 (MQ=255)
                                ttGTAAATCTAATACATATTTTCCAGAAATATAGTGCACTAACATTGCTTGTTGAACATGCAATACACCTTTAGGTTGCCCAGTAGAACCt                                                            <  2:3853487/91‑1 (MQ=255)
                                ttGTAAATCTAATACATATTTTCCAGAAATATAGTGCACTAACATTGCTTGTTGAACATGCAATACACCTTTAGGTTGCCCAGTAGAACCt                                                            <  2:3117916/91‑1 (MQ=255)
                                   tAAATCTAATACATATTTTCCAGAAATATAGTGCACTAACATTGCTTGTTGAACATGCAATACACCTTTAGGTTGCCCAGTAGAACCTGAt                                                         >  2:1847754/1‑91 (MQ=255)
                                    aaaTCTAATACATATTTTCCAGAAATATAGTGCACTAACATTGCTTGTTGAACATGCAATACACCTTTAGGTTGCCCAGTAGAACCTGATg                                                        <  2:1186776/91‑1 (MQ=255)
                                     aaTCTAATACATATTTTCCAGAAATATAGTGCACTAACATTGCTTGTTGAACATGCAATACACCTTTAGGTTGCCCAGTAGAACCTGATGt                                                       <  2:3085114/91‑1 (MQ=255)
                                     aaTCTAATACATAGTTTCCAGAAATATAGTGCACTAACATTGCTTGTTGAACATGCAATACACCTTTAGGTTGCCCAGTAGAACCTGATGt                                                       <  2:3290727/91‑1 (MQ=255)
                                      aTCTAATACATATTTTCCAGAAATATAGTGCACTAACATTGCTTGTTGAACATGCAATACACCTTTAGGTTGCCCAGTAGAACCTGATGta                                                      <  1:3887602/91‑1 (MQ=255)
                                      aTCTAATACATATTTTCCAGAAATATAGTGCACTAACATTGCTTGTTGAACATGCAATACACCTTTAGGTTGCCCAGTAGAACCTGATGta                                                      >  1:3003250/1‑91 (MQ=255)
                                      aTCTAATACATATATTCCAGAAATATAGTGCACTAACATTGCTTGTTGAACATGCAATACACCTTTAGGTTGCCCAGTAGAACCTGATGta                                                      <  2:1908180/91‑1 (MQ=255)
                                       tCTAATACATATTTTCCAGAAATATAGTGCACTAACATTGCTTGTTGAACATGCAATACACCTTTAGGTTGCCCAGTAGAACCTGATGtat                                                     <  2:1438959/91‑1 (MQ=255)
                                        cTAATACATATTTTCCAGAAATATAGTGCACTAACATTGCTTGTTGAACATGCAATACACCTTTAGGTTGCCCAGTAGAACCTGATGtata                                                    >  1:179318/1‑91 (MQ=255)
                                        cTAATACATATTTTCCAGAAATATAGTGCACTAACATTGCTTGTTGAACATGCAATACACCTTTAGGTTGCCCAGTAGAACCTGATGtata                                                    <  1:3085076/91‑1 (MQ=255)
                                          aaTACATATTTTCCAGAAATATAGTGCACTAACATTGCTTGTTGAACATGCAATACACCTTTAGGTTGCCCAGTAGAACCTGATGTATAAt                                                  >  2:293749/1‑91 (MQ=255)
                                           aTACATATTTTCCAGAAATATAGTGCACTAACATTGCTTGTTGAACATGCAATACACCTTTAGGTTGCCCAGTAGAACCTGATGTATAATg                                                 >  1:3247622/1‑91 (MQ=255)
                                           aTACATATTTTCCAGAAATATAGTGCACTAACATTGCTTGTTGAACATGCAATACACCTTTAGGTTGCCCAGTAGAACCTGATATATAATg                                                 >  1:1963643/1‑91 (MQ=255)
                                            tACATATTTTCCAGAAATATAGTGCACTAACATTGCTTGTTGAACATGCAATACACCTTTAGGTTGCCCAGTAGAACCTGATGTATAATGt                                                >  1:1364243/1‑91 (MQ=255)
                                             aCATATTTTCCAGAAATATAGTGCACTAACATTGCTTGTTGAACATGCAATACACCTTTAGGTTGCCCAGTAGAACCTGATGTATAATGTa                                               <  2:290713/91‑1 (MQ=255)
                                                tatTTTCCAGAAATATAGTGCACTAACATTGCTTGTTGAACATGCAATACACCTTTAGGTTGCCCAGTAGAACCTGATGTATAATGTaaaa                                            >  1:720184/1‑91 (MQ=255)
                                                tatTTTCCAGAAATATAGTGCACTAACATTGCTTGTTGAACATGCAATACACCTTTAGGTTGCCCAGTAGAACCTGATGTATAATGTaaaa                                            <  1:604333/91‑1 (MQ=255)
                                                       cAGAAATATAGTGCACTAACATTGCTTGTTGAACATGCAATACACCTTTAGGTTGCCCAGTAGAACCTGATGTATAATGTAAAATCAAAcc                                     <  2:2404129/91‑1 (MQ=255)
                                                       cAGAAATATAGTGCACTAACATTGCTTGTTGAACATGCAATACACCTTTAGGTTGCCCAGTAGAACCTGATGTATAATGTAAAATCAAAcc                                     <  2:2940680/91‑1 (MQ=255)
                                                        aGAAATATAGTGCACTAACATTGCTTGTTGAACATGCAATACACCTTTAGGTTGCCCAGTAGAACCTGATGTATAATGTAAAATCAAACca                                    >  2:3606485/1‑91 (MQ=255)
                                                        aGAAATATAGTGCACTAACATTGCTTGTTGAACATGCAATACACCTTTAGGTTGCCCAGTAGAACCTGATGTATAATGTAAAATCAAACca                                    >  1:3344542/1‑91 (MQ=255)
                                                          aaaTATAGTGCACTAACATTGCTTGTTGAACATGCAATACACCTTTAGGTTGCCCAGTAGAACCTGATGTATAATGTAAAATCAAACcatc                                  <  1:356000/91‑1 (MQ=255)
                                                          aaaTATAGTGCACTAACATTGCTTGTTGAACATGCAATACACCTTTAGGTTGCCCAGTAGAACCTGATGTATAATGTAAAATCAAACcatc                                  <  2:1100360/91‑1 (MQ=255)
                                                           aaTATAGTGCACTAACATTGCTTGTTGAACATGCAATACACCTTTAGGTTGCCCAGTAGAACCTGATGTATAATGTAAAATCAAACcatca                                 >  1:1918752/1‑91 (MQ=255)
                                                           aaTATAGTGCACTAACATTGCTTGTTGAACATGCAATACACCTTTAGGTTGCCCAGTAGAACCTGATGTATAATGTAAAATCAAACcatca                                 <  2:2770095/91‑1 (MQ=255)
                                                           aaTATAGTGCACTAACATTGCTTGTTGAACATGCAATACACCTTTAGGTTGCCCAGTAGAACCTGATGTATAATGTAAAATCAAACcatca                                 >  2:2176104/1‑91 (MQ=255)
                                                           aaTATAGTGCACTAACATTGCTTGTTGAACATGCAATACACCTTTAGGTTGCCCAGTAGAACCTGATGTATAATGTAAAATCAAACcatca                                 >  2:742615/1‑91 (MQ=255)
                                                             tataGTGCACTAACATTGCTTGTTGAACATGCAATACACCTTTAGGTTGCCCAGTAGAACCTGATGTATAATGTAAAATCAAACCatcatc                               <  2:631313/91‑1 (MQ=255)
                                                              ataGTGCACTAACATTGCTTGTTGAACATGCAATACACCTTTAGGTTGCCCAGTAGAACCTGATGTATAATGTAAAATCAAACCATCATcc                              <  1:3193732/91‑1 (MQ=255)
                                                              ataGTGCACTAACATTGCTTGTTGAACATGCAATACACCTTTAGGTTGCCCAGTAGAACCTGATGTATAATGTAAAATCAAACCATCATcc                              <  2:3414822/91‑1 (MQ=255)
                                                               taGTGCACTAACATTGCTTGTTGAACATGCAATACACCTTTAGGTTGCCCAGTAGAACCTGATGTATAATGTAAAATCAAACCATCATCCg                             >  2:3382691/1‑91 (MQ=255)
                                                                aGTGCACTAACATTGCTTGTTGAACATGCAATACACCTTTAGGTTGCCCAGTAGAACCTGATGTATAATGTAAAATCAAACCATCATCCGa                            <  2:2922523/91‑1 (MQ=255)
                                                                aGTGCACTAACATTGCTTGTTGAACATGCAATACACCTTTAGGTTGCCCAGTAGAACCTGATGTATAATGTAAAATCAAACCATCATCCGa                            <  2:2247162/91‑1 (MQ=255)
                                                                 gTGCACTAACATTGCTTGTTGAACATGCAATACACCTTTAGGTTGCCCAGTAGAACCTGATGTATAATGTAAAATCAAACCCTCATCCGAc                           >  1:3789203/1‑91 (MQ=255)
                                                                 gTGCACTAACATTGCTTGTTGAACATGCAATACACCTTTAGGTTGCCCAGTAGAACCTGATGTATAATGTAAAATCAAACCATCATCCGAc                           >  1:1661515/1‑91 (MQ=255)
                                                                 gTGCACTAACATTGCTTGTTGAACATGCAATACACCTTTAGGTTGCCCAGTAGAACCTGATGTATAATGTAAAATCAAACCATCATCCGAc                           >  2:2633030/1‑91 (MQ=255)
                                                                  tGCACTAACATTGCTTGTTGAACATGCAATACACCTTTAGGTTGCCCAGTAGAACCTGATGTATAATGTAAAATCAAACCATCATCCGACt                          <  1:1566240/91‑1 (MQ=255)
                                                                    cACTAACATTGCTTGTTGAACATGCAATACACCTTTAGGTTGCCCAGTAGAACCTGATGTATAATGTAAAATCAAACCATCATCCGACttt                        >  1:900785/1‑91 (MQ=255)
                                                                    cACTAACATTGCTTGTTGAACATGCAATACACCTTTAGGTTGCCCAGTAGAACCTGATGTATAATGTAAAATCAAACCATCATCCGACttt                        <  2:2435923/91‑1 (MQ=255)
                                                                      cgaaCATTGCTTGTTGAACATGCAATACACCTTTAGGTTGCCCAGTAGAACCTGATGTATAATGTAAAATCAAACCATCATCCGACTTTaa                      <  2:2688289/89‑1 (MQ=255)
                                                                      cTAACATTGCTTGTTGAACATGCAATACACCTTTAGGTTGCCCAGTAGAACCTGATGTATAATGTAAAATCAAACCATCATCCGACTTTaa                      <  1:53023/91‑1 (MQ=255)
                                                                       tAACATTGCTTGTTGAACATGCAATACACCTTTAGGTTGCCCAGTAGAACCTGATGTATAATGTAAAATCAAACCATCATCCGACTTTAAc                     <  2:1545924/91‑1 (MQ=255)
                                                                       tAACATTGCTTGTTGAACATGCAATACACCTTTAGGTTGCCCAGTAGAACCTGATGTATAATGTAAAATCAAACCATCATCCGACTTTAAc                     <  2:1543985/91‑1 (MQ=255)
                                                                        aaCATTGCTTGTTGAACATGCAATACACCTTTAGGTTGCCCAGTAGAACCTGATGTATAATGTAAAATCAAACCATCATCCGACTTTAAcc                    <  1:2401659/91‑1 (MQ=255)
                                                                          cATTGCTTGTTGAACATGCAATACACCTTTAGGTTGCCCAGTAGAACCTGATGTATAATGTAAAATCAAACCATCATCCGACTTTAACCAt                  >  2:2575457/1‑91 (MQ=255)
                                                                             tGCTTGTTGAACATGCAATACACCTTTAGGTTGCCCAGTAGAACCTGATGTATAATGTAAAATCAAACCATCATCCGACTTTAACCATTCa               >  2:764407/1‑91 (MQ=255)
                                                                              gcatgttcAACAAGCAATACACCTTTAGGTTGCCCAGTAGAACCTGATGTATAATGTAAAATCAAACCATCATCCGACTTTAACCATTCaa              >  1:3258311/4‑91 (MQ=255)
                                                                              gCTTGTTGAACATGCAATACACCTTTAGGTTGCCCAGTAGAACCTGATGTATAATGTAAAATCAAACCATCATCCGACTTTAACCATTCaa              >  2:179179/1‑91 (MQ=255)
                                                                               catgttcAACAAGCAATACACCTTTAGGTTGCCCAGTAGAACCTGATGTATAATGTAAAATCAAACCATCATCCGACTTTAACCATTCAAt             >  1:2402816/3‑91 (MQ=255)
                                                                               cTTGTTGAACATGCAATACACCTTTAGGTTGCCCAGTAGAACCTGATGTATAATGTAAAATCAAACCATCATCCGACTTTAACCATTCAAt             <  2:3510280/91‑1 (MQ=255)
                                                                                ttgttgAACATGCAATACACCTTTAGGTTGCCCAGTAGAACCTGATGTATAATGTAAAATCAAACCATCATCCGACTTTAACCATTCAATg            <  1:1056229/91‑1 (MQ=255)
                                                                                ttgttgAACATGCAATACACCTTTAGGTTGCCCAGTAGAACCTGATGTATAATGTAAAATCAAACCATCATCCGACTTTAACCATTCAATg            <  2:1123023/91‑1 (MQ=255)
                                                                                atgttcAACAAGCAATATACCTTTAGGTTGCCCAGCAGAACCTGATGTATAATGTAACATAAAACCATCCTCCGGCTTTAACCATTCCATg            >  2:1073672/2‑91 (MQ=255)
                                                                                atgttcAACAAGCAATACACCTTTAGGTTGCCCAGTAGAACCTGATGTATAATGTAAAATCAAACCATCATCCGACTTTAACCATTCAATg            >  2:2516964/2‑91 (MQ=255)
                                                                                atgttcAACAAGCAATACACCTTTAGGTTGCCCAGTAGAACCTGATGTATAATGTAAAATCAAACCATCATCCGACTTTAACCATTCAATg            >  1:1614034/2‑91 (MQ=255)
                                                                                atgttcAACAAGCAATACACCTTTAGGTTGCCCAGTAGAACCTGATGTATAATGTAAAATCAAACCATCATCCGACTTTAACCATTCAATg            >  2:3432415/2‑91 (MQ=255)
                                                                                atgttcAACAAGCAATACACCTTTAGGTTGCCCAGTAGAACCTGACGTATAATGTAAAATCAAACCATCATCCGACTTTAACCATTCAATg            >  2:217579/2‑91 (MQ=255)
                                                                                    tgAACATGCAATACACCTTTAGGTTGCCCAGTAGAACCTGATGTATAATGTAAAATCAAACCATCATCCGACTTTAACCATTCAATGTCaa        >  2:1240301/1‑91 (MQ=255)
                                                                                     gAACATGCAATACACCTTTAGGTTGCCCAGTAGAACCTGATGTATAATGTAAAATCAAACCATCATCCGACTTTAACCATTCAATGTCaaa       >  2:854625/1‑91 (MQ=255)
                                                                                     gAACATGCAATACACCTTTAGGTTGCCCAGTAGAACCTGATGTATAATGTAAAATCAAACCATCATCCGACTTTAACCATTCAATGTCaaa       <  1:2845756/91‑1 (MQ=255)
                                                                                     gAACATGCAATACACCTTTAGGTTGCCCAGTAGAACCTGATGTATAATGTAAAATCAAACCATCATCCGACTTTAACCATTCAATGTCaaa       >  2:2831701/1‑91 (MQ=255)
                                                                                       aCATGCAATACACCTTTAGGTTGCCCAGTAGAACCTGATGTATAATGTAAAATCAAACCATCATCCGACTTTAACCATTCAATGTCAAAtt     <  1:2007556/91‑1 (MQ=255)
                                                                                        cATGCAATACACCTTTAGGTTGCCCAGTAGAACCTGATGTATAATGTAAAATCAAACCATCATCCGACTTTAACCATTCAATGTCAAATTc    <  1:1021120/91‑1 (MQ=255)
                                                                                        cATGCAATACACCTTTAGGTTGCCCAGTAGAACCTGATGTATAATGTAAAATCAAACCATCATCCGACTTTAACCATTCAATGTCAAATTc    <  1:3141003/91‑1 (MQ=255)
                                                                                         aTGCAATACACCTTTAGGTTGCCCAGTAGAACCTGATGTATAATGTAAAATCAAACCATCATCCGACTTTAACCATTCAATGTCAAATTCa   <  1:8509/91‑1 (MQ=255)
                                                                                          tGCAATACACCTTTAGGTTGCCCAGTAGAACCTGATGTATAATGTAAAATCAAACCATCATCCGACTTTAACCATTCAATGTCAAATTCAt  <  2:902346/91‑1 (MQ=255)
                                                                                          |                                                                                          
GGATCTGCTGTACACCAATAAACATCATCTTCTTGTAAATCTAATACATATTTTCCAGAAATATAGTGCACTAACATTGCTTGTTGAACATGCAATACACCTTTAGGTTGCCCAGTAGAACCTGATGTATAATGTAAAATCAAACCATCATCCGACTTTAACCATTCAATGTCAAATTCAT  >  USA300TCH1516_ALE/1850842‑1851022

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: