| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 2,126,293 | A→C | 5.1% | intergenic (+26/‑52) | USA300HOU_RS10850 → / → USA300HOU_RS10855 | hypothetical protein/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 2,126,293 | 0 | A | C | 5.1% | 914.4 / 29.5 | 276 | intergenic (+26/‑52) | USA300HOU_RS10850/USA300HOU_RS10855 | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (111/149); new base C (2/12); total (113/163) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.88e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.45e-01 | |||||||||||
Only 100 of 284 total aligned reads displayed.
AATACTTGGAATTTATTTCACAAAAAATAGATGGCGATAAGTTAACCAAAGAAGATTCATTATGATTTTACTAATCAAAAAACGTCTACAAGTGTAGACGTTGAATGGTGGTGAGAGTGTGAGCGAGAATAAAGGAGAAATGATGACGCATAATATAGAAAAACGCATTAATAAATTAAA > USA300TCH1516_ALE/2126203‑2126382 | aaTACTTGGAATTTATTTCACAAAAAATAGATGGCGATAAGTTAACCAAAGAAGATTCATTATGATTTTACTAATCAAAAAACGTCTACaa > 2:3007418/1‑91 (MQ=255)aaTACTTGGAATTTATTTCACAAAAAATAGATGGCGATAAGTTAACCAAAGAAGATTCATTATGATTTTACTAATCAAAAAACGTCTACaa < 1:1545126/91‑1 (MQ=255) aTACTTGGAATTTATTTCACAAAAAATAGATGGCGATAAGTTAACCAAAGAAGATTCATTATGATTTTACTAATCAAAAAACGTCTACAAg < 2:172372/91‑1 (MQ=255) tACTTGGAATTTATTTCACAAAAAATAGATGGCGATAAGTTAACCAAAGAAGATTCATTATGATTTTACTAATCAAAAAACGTCTACAAgt < 2:1896726/91‑1 (MQ=255) tACTTGGAATTTATTTCACAAAAAATAGATGGCGATAAGTTAACCAAAGAAGATTCATTATGATTTTACTAATCAAAAAACGTCTACAAgt < 2:33681/91‑1 (MQ=255) cTTGGAATTTATTTCACAAAAAATAGATGGCGATAAGTTAACCAAAGAAGATTCATTATGATTTTACTAATCAAACAACGTCTACAAgtgt > 2:3730334/1‑91 (MQ=255) cTTGGAATTTATTTCACAAAAAATAGATGGCGATAAGTTAACCAAAGAAGATTCATTATGATTTTACTAATCAAAAAACGTCTACAAgtgt < 2:872030/91‑1 (MQ=255) cTTGGAATTTATTTCACAAAAAATAGATGGCGATAAGTTAACCAAAGAAGATTCATTATGATTTTACTAATCAAAAAACGTCTACAAgtgt > 1:3568084/1‑91 (MQ=255) tGGAATTTATTTCACAAAAAATAGATGGCGATAAGTTAACCAAAGAAGATTCATTATGATTTTACTAATCAAAAAACGTCTACACTTGTAg < 1:269604/91‑1 (MQ=255) ggAATTTATTTCACAAAAAATAGATGGCGATAAGTTAACCAAAGAAGATTCATTATGATTTTACTAATCAAAAAACGTCTACACTTGTAGa < 1:3636590/91‑1 (MQ=255) ggAATTTATTTCACAAAAAATAGATGGCGATAAGTTAACCAAAGAAGATTCATTATGATTTTACTAATCAAAAAACGTCTACAAGTGTAGa < 1:2645429/91‑1 (MQ=255) gAATTTATTTCACAAAAAATAGATGGCGATAAGTTAACCAAAGAAGATTCATTATGATTTTACTAATCAAAAAACGTCTACACTTGTAGAc < 1:891157/91‑1 (MQ=255) gAATTTATTTCACAAAAAATAGATGGCGATAAGTTAACCAAAGAAGATTCATTATGATTTTACTAATCAAAAAACGTCTACAAGTGTAGAc > 2:473878/1‑91 (MQ=255) aagttatttCACAAAAAAGAGATGGCGATAAGTTAACCAAAGGTGATGCATTATGATTTTACTAATCAAAAAACGTCTACACTTGTAGACg < 2:3423184/88‑1 (MQ=255) aaTTTATTTCACAAAAAATAGATGGCGATAAGTTAACCAAAGAAGATTCATTATGATTTTACTAATCAAAAAACGTCTACAAGTGTAGACg > 2:585545/1‑91 (MQ=255) aaTTTATTTCACAAAAAATAGATGGCGATAAGTTAACCAAAGAAGATTCAGTATGATTTTACTAATCAAAAAACGTCTACAAGTGTAGACg < 2:2394855/91‑1 (MQ=255) atttatttCACAAAAAATAGATGGCGATAAGTTAACCAAAGAAGATTCATTATGATTTTACTAATCAAAAAACGTCTACAAGTGTAGACGt < 1:530231/91‑1 (MQ=255) ttatttCACAAAAAATAGATGGCGATAAGTTAACCAAAGAAGATTCATTATGATTTTACTAATCAAAAAACGTCTACAAGTGTAGACGTTg < 2:3297810/91‑1 (MQ=255) ttatttCACAAAAAATAGATGGCGATAAGTTAACCAAAGAAGATTCATTATGATTTTACTAATCAAAAAACGTCTACAAGTGTAGACGTTg < 2:510183/91‑1 (MQ=255) ttatttCACAAAAAATAGATGGCGATAAGTTAACCAAAGAAGATTCATTATGATTATAATAATAAAAAAACGTCTACAAGTGTAGACGTTg < 2:382123/91‑1 (MQ=255) tatttCACAAAAAATAGATGGCGATAAGTTAACCAAAGAAGATTCATTATGATTTTACTAATCAAAAAACGTCTACAAGTGTAGACGTTGa < 2:2309564/91‑1 (MQ=255) atttCACAAAAAATAGATGGCGATAAGTTAACCAAAGAAGATTCATTATGATTTTACTAATCAAAAAACGTCTACAAGTGTAGACGTTGaa < 1:785602/91‑1 (MQ=255) ttCACAAAAAATAGATGGCGATAAGTTAACCAAAGAAGATTCATTATGATTTTACTAATCAAAAAACGTCTACAAGTGTAGACGTTGAAtg < 1:3031496/91‑1 (MQ=255) ttCAAAAAAAATAGATGGCGATAAGTTAACCAAAGAAGATTCATTATGATTTTACTAATCAAAAGACGTCTACAAGTGTAGACGTTGAAtg < 2:1562896/91‑1 (MQ=255) tgcacaAAAAATAGATGGCGATAAGTTAACCAAAGAATATACATTATGATATTACTAATAAAAAAACGTCTACAAGTGTAGACGTTGAAtg < 2:2329003/89‑1 (MQ=38) cacaAAAAATAGATGGCGATAAGTTAACCAAAGAAGATTCATTATGATTTTACTAATCAAAAAACGTCTACAAGTGTAGACGTTGAAtggt < 1:1125365/91‑1 (MQ=255) cacaAAAAATAGATGGCGATAAGTTAACCAAAGAAGATTCATTATGATTTTAATAAAAAAAAAACGTCTACAAGTGTAGACGTTGAAtggt < 2:150084/91‑1 (MQ=255) aaaaTAGATGGCGATAAGTTAACCAAAGAAGATTCATTATGATTTTACTAATCAAAAAACGTCTACAAGTGTAGACGTTGAATGGTGGTga < 2:1259234/91‑1 (MQ=255) aaaTAGATGGCGATAAGTTAACCAAAGAAGATTCATTATGATTTTACTAATCAAAAAACGTCTACAAGTGTAGACGTTGAATGGTGGTgag < 1:3442409/91‑1 (MQ=255) aaaTAGATGGCGATAAGTTAACCAAAGAAGATTCATTATGATTTTACTAATCAAAAAACGTCTACAAGTGTAGACGTTGAATGGTGGTgag < 2:671114/91‑1 (MQ=255) caTAGATGGCGATAAGTTAGCCGAAGAAGGTTCGTTATGCTTTTACTAATCAAAAAACGTCTACAAGTGTAGACGTTGAATGGTGGTgaga < 1:252062/90‑1 (MQ=25) aGATGGCGATAAGTTAACCAAAGAAGATTCATTATGATTTTACTAATCAAAAAACGTCTACAAGTGTAGACGTTGAATGGTGGTGAGAgtg > 1:656831/1‑91 (MQ=255) gATGGCGATAAGTTAACTAAAGAAGATTCATTATGATTTTACTAATCAAAAAACGTCTACAAGTGTAGACGTTGAATGGTGGTGAGAgtgt > 2:1928197/1‑91 (MQ=255) gATGGCGATAAGTTAACCAAAGAAGATTCATTATGATTTTACTAATCAAAAAACGTCTACAAGTGTAGACGTTGAATGGTGGTGAGAgtgt < 1:2887140/91‑1 (MQ=255) gATGGCGATAAGTTAACCAAAGAAGATTCATTATGATTTTACTAATCAAAAAACGTCTACAAGTGTAGACGTTGAATGGTGGTGAGAgtgt > 1:2203450/1‑91 (MQ=255) gATGGCGATAAGTTAACCAAAGAAGATTCATTATGATTTTACTAATCAAAAAACGTCTACAAGTGTAGACGTTGAATGGTGGTGAGAgtgt > 2:1929900/1‑91 (MQ=255) aTGGCGATAAGTTAACCAAAGAAGATTCATTATGATTTTACTAATCAAAAAACGTCTACAAGTGTAGACGTTGAATGGTGGTGAGAGtgtg > 2:217295/1‑91 (MQ=255) tGGCGATAAGTTAACCAAAGAAGATTCATTATGATTTTACTAATCAAAAAACGTCTACAAGTGTAGACGTTGAATGGTGGTGAGAGTGTGa > 1:1035043/1‑91 (MQ=255) ggCGATAAGTTAACCAAAGAAGATTCATTATGATTTTACTAATCAAAAAACGTCTACAAGTGTAGACGTTGAATGGTGGTGAGAGTGTGAg > 2:1006722/1‑91 (MQ=255) gCGATAAGTTAACCAAAGGAGATTCATTATGATTTTACGAATCAAAAAACGTCTACAAGTGTAGACGTTGAGTGGTGGTGAGAGTGTGAGc < 2:415863/91‑1 (MQ=255) gCGATAAGTTAACCAAAGAAGATTCATTATGATTTTACTAATCAAAAAACGTCTACAAGTGTAGACGTTGAATGGTGGTGAGAGTGTGAGc < 2:917032/91‑1 (MQ=255) gCGATAAGTTAACCAAAGAAGATTCATTATGATTTTACTAATCAAAAAACGTCTACAAGTGTAGACGTTGAATGGTGGTGAGAGTGTGAGc < 1:2105817/91‑1 (MQ=255) gCGATAAGTTAACCAAAGAAGATTCATTATGATTTTACTAATCAAAAAACGTCTACAAGTGTAGACGTTGAATGGTGGTGAGAGTGTGAGc > 1:3279473/1‑91 (MQ=255) cGATAAGTTAACCAAAGAAGATTCATTATGATTTTACTAATCAAAAAACGTCTACAAGTGTAGACGTTGAATGGTGGTGAGAGTGTGAGCg < 1:2961052/91‑1 (MQ=255) gATAAGTTAACCAAAGAAGATTCATTATGATTTTACTAATCAAAAAACGTCTACAAGTGTAGACGTTGAATGGTGGTGAGAGTGTGAGCga > 1:1809052/1‑91 (MQ=255) aTAAGTTAACCAAAGAAGATTCATTATGATTTTACTAATCAAAAAACGTCTACAAGTGTAGACGTTGAATGGTGGTGAGAGTGTGAGCgag < 1:3842257/91‑1 (MQ=255) tAAGTTAACCAAAGAAGATTCATTATGATTTTACTAATCAAAAAACGTCTACAAGTGTAGACGTTGAATGGTGGTGAGAGTGTGAGCgaga > 2:2885089/1‑91 (MQ=255) aaGTTAACCAAAGAAGATTCATTATGATTTTACTAATCAAAAAACGTCTACAAGTGTAGACGTTGAATGGTGGTGAGAGTGTGAGCGAGaa < 1:1584016/91‑1 (MQ=255) aGTTAACCAAAGAAGATTCATTATGATTTTACTAATCAAAAAACGTCTACAAGTGTAGACGTTGAATGGTGGTGAGAGTGTGAGCGAGAAt > 1:2562723/1‑91 (MQ=255) gTTAACCAAAGAAGATTCATTATGATTTTACGAATCAAAAAACGGCTACAAGTGTAGACGTTGAATGGTGGTGAGAGTGTGAGCGAGAATa < 1:3154933/91‑1 (MQ=255) ttAACCAAAGAAGATTCATTATGATTTTACTAATCAAAAAACGTCTACAAGTGTAGACGTTGAATGGTGGTGAGAGTGTGAGCGAGAATaa < 1:2372364/91‑1 (MQ=255) ttAACCAAAGAAGATTCATTATGATTTTACTAATCAAAAAACGTCTACAAGTGTAGACGTTGAATGGTGGTGAGAGTGTGAGCGAGAATaa > 1:2757865/1‑91 (MQ=255) gaaCCAAAGAAGATTCATTATGATTTTACTAATCAAAAAACGTCTACAAGTGTAGACGTTGAATGGTGGTGAGAGTGTGAGCGAGAATaaa > 1:1356574/2‑91 (MQ=255) aaCCAAAGAAGATTCA‑TATGATTTTACTAATCAAAAAACGTCTACAAGTGTAGACGTTGAATGGTGGTGAGAGTGTGAGCGAGAATAAAgg < 2:2752283/91‑1 (MQ=255) aaaGAAGATTCATTATGATTTTACTAATCAAAAAACGTCTACAATTGTAGACGTTGAATGGTGGTGAGAGTGTGAGCGAGAATAAAGgaga < 2:3544724/91‑1 (MQ=255) aagaagATTCATTATGATTTTACTAATCAAAAAACGTCTACAAGTGTAGACGTTGAATGGTGGTGAGAGTGTGAGCGAGAATAAAGGAGaa < 1:203338/91‑1 (MQ=255) agaagaTTCATTATGATTTTACTAATCAACAAACGTCTACAAGTGTAGACGTTGAATGGTGGTGAGAGTGTGAGCGAGAATAAAGGAGaaa > 2:1106284/1‑91 (MQ=255) agaagaTTCATTATGATTTTACTAATCAAAAAACGTCTACAAGTGTAGACGTTGAATGGTGGTGAGAGTGTGAGCGAGAATAAAGGAGaaa > 2:3073552/1‑91 (MQ=255) gaagaTTCATTATGATTTTACTAATCAAAAAACGTCTACAAGTGTAGACGTTGAATGGTGGTGAGAGTGTGAGCGAGAATAAAGGAGAAat > 2:3555475/1‑91 (MQ=255) aagaTTCATTATGATTTTACTAATCAAAAAACGTCTACAAGTGTAGACGTTGAATGGTGGTGAGAGTGTGAGCGAGAATAAAGGAGAAatg > 2:2530013/1‑91 (MQ=255) agaTTCATTATGATTTTACTAATCAAAAAACGTCTACAAGTGTAGACGTTGAATGGTGGTGAGAGTGTGAGCGAGAATAAAGGAGAAatga > 2:3219211/1‑91 (MQ=255) agaTTCATTATGATTTTACTAATCAAAAAACGTCTACAAGTGTAGACGTTGAATGGTGGTGAGAGTGTGAGCGAGAATAAAGGAGAAatga < 1:2414899/91‑1 (MQ=255) gaTTCATTATGATTTTACTAATCAAAAAACGTCTACAAGTGTAGACGTTGAATGGTGGTGAGAGTGTGAGCGAGAATAAAGGAGAAatgat < 1:1390034/91‑1 (MQ=255) gaTTCATTATGATTTTACTAATCAAAAAACGTCTACAAGTGTAGACGTTGAATGGTGGTGAGAGTGTGAGCGAGAATAAAGGAGAAatgat < 1:1866978/91‑1 (MQ=255) ttCATTATGATTTTACTAATCAAAAAACGTCTACAAGTGTAGACGTTGAATGGTGGTGAGAGTGTGAGCGAGAATAAAGGAGAAAtgatga > 2:1208312/1‑91 (MQ=255) ttCATTATGATTTTACTAATCAAAAAACGTCTACAAGTGTAGACGTTGAATGGTGGTGAGAGTGTGAGCGAGAATAAAGGAGAAAtgatga < 1:3353049/91‑1 (MQ=255) tCATTATGATTTTACTAATCAAAAAACGTCTACAAGTGTAGACGTTGAATGGTGGTGAGAGTGTGAGCGAGAATAAAGGAGAAATGATGAc < 1:95017/91‑1 (MQ=255) cATTATGATTTTACTAATCAAAAAACGTCTATAAGTGTAGACGTTGAATGGTGGTGAGAGTGTGAGCGAGAATAAAGGAGAAATGATGACg > 2:1372391/1‑91 (MQ=255) cATTATGATTTTACTAATCAAAAAACGTCTACAAGTGTAGACGTTGAATGGTGGTGAGAGTGTGAGCGAGAATAAAGGAGAAATGATGACg > 1:3696076/1‑91 (MQ=255) aTTATGATTTTACTAATCAAAAAACGTCTACAAGTGTAGACGTTGAATGGTGGTGAGAGTGTGAGCGAGAATAAAGGAGAAATGATGACGc > 1:14366/1‑91 (MQ=255) ttATGATTTTACTAATCAAAAAACGTCTACAAGTGTAGACGTTGAATGGTGGTGAGAGTGTGAGCGAGAATAAAGGAGAAATGATGACGCa < 1:1267691/91‑1 (MQ=255) gATTTTACTAATCAAAAAACGTCTACAAGTGTAGACGTTGAATGGTGGTGAGAGTGTGAGCGAGAATAAAGGAGAAATGATGACGCataat > 1:3761289/1‑91 (MQ=255) ttttCCTAATCAAAAAACGTCTACAAGTGTAGACGTTGAATGGTGGTGAGAGTGTGAGCGAGAATAAAGGAGAAATGATGACGCATAatat > 1:3125429/1‑91 (MQ=255) tttACTAATCAAAAAACGTCTACAAGTGTAGACGTTGAATGGTGGTGAGAGTGTGAGCGAGAATAAAGGAGAAATGATGACGCATAAtata < 2:1856772/91‑1 (MQ=255) ttACTAATCAAAAAACGTCTACAAGTGTAGACGTTGAATGGTGGTGAGAGTGTGAGCGAGAATAAAGGAGAAATGATGACGCATAATATAg < 2:960565/91‑1 (MQ=255) cTAATCAAAAAACGTCTACAAGTGTAGACGTTGAATGGTGGTGAGAGTGTGAGCGAGAATAAAGGAGAAATGATGACGCATAATATAGaaa < 1:2719651/91‑1 (MQ=255) aaTCAAAAAACGTCTACAAGTGTAGACGTTGAATGGTGGTGAGAGTGTGAGCGAGAATAAAGGAGAAATGATGACGCATAATATAGaaaaa > 2:1405187/1‑91 (MQ=255) aaaaaaCGTCTACAAGTGTAGACGTTGAATGGTGGTGAGAGTGTGAGCGAGAATAAAGGAGAAATGATGACGCATAATATAGAAAAACGCa > 1:3560695/1‑91 (MQ=255) aaaaaCGTCTACAAGTGTAGACGTTGAATGGTGGTGAGAGTGTGAGCGAGAATAAAGGAGAAATGATGACGCATAATATAGAAAAACGCAt > 1:3507043/1‑91 (MQ=255) aaCGTCTACAAGTGTAGACGTTGAATGGTGGTGAGAGTGTGAGCGAGAATAAAGGAGAAATGATGACGCATAATATAGAAAAACGCATtaa < 1:922872/91‑1 (MQ=255) cGTCTACAAGTGTAGACGTTGAATGGTGGTGAGAGTGTGAGCGAGAATAAAGGAGAAATGATGACGCATAATATAGAAAAACGCATtaata < 1:3894599/91‑1 (MQ=255) cGTCTACAAGTGTAGACGTTGAATGGTGGTGAGAGTGTGAGCGAGAATAAAGGAGAAATGATGACGCATAATATAGAAAAACGCATtaata > 1:1477157/1‑91 (MQ=255) cGTCTACAAGTCTAGACGTTGAATGGTGGTGAGAGTGTGAGCGAGAATAAAGGAGAAATGATGACGCATAATATAGAAAAACGCATtaata < 1:3590444/91‑1 (MQ=255) gTCTACAAGTGTAGACGTTGAATGGTGGTGAGAGTGTGAGCGAGAATAAAGGAGAAATGATGACGCATAATATAGAAAAACGCATtaataa < 2:3690912/91‑1 (MQ=255) tCTACAAGTGTAGACGTTGAATGGTGGTGAGAGTGTGAGCGAGAATAAAGGAGAAATGATGACGCATAATATAGAAAAACGCATTAATaaa < 1:1503820/91‑1 (MQ=255) tCTACAAGTGTAGACGTTGAATGGTGGTGAGAGTGTGAGCGAGAATAAAGGAGAAATGATGACGCATAATATAGAAAAACGCATTAATaaa > 1:1229476/1‑91 (MQ=255) cTACAAGTGTAGACGTTGAATGGTGGTGAGAGTGTGAGCGAGAATAAAGGAGAAATGATGACGCATAATATAGAAAAACGCATTAATAAAt > 2:2082644/1‑91 (MQ=255) cTACAAGTGTAGACGTTGAATGGTGGTGAGAGTGTGAGCGAGAATAAAGGAGAAATGATGACGCATAATATAGAAAAACGCATTAATAAAt > 1:730910/1‑91 (MQ=255) cTACAAGTGTAGACGTTGAATGGTGGTGAGAGTGTGAGCGAGAATAAAGGAGAAATGATGACGCATAATATAGAAAAACGCATTAATAAAt > 1:1066996/1‑91 (MQ=255) cTACAAGTGTAGACGTTGAATGGTGGTGAGAGTGTGAGCGAGAATAAAGGAGAAATGATGACGCATAATATAGAAAAACGCATTAATAAAt > 1:1003143/1‑91 (MQ=255) cTACAAGTGTAGACGTTGAATGGTGGTGAGAGTGTGAGCGAGAATAAAGGAGAAATGATGACGCATAATATAGAAAAACGCATTAATAAAt > 1:3480834/1‑91 (MQ=255) tACAAGTGTAGACGTTGAATGGTGGTGAGAGTGTGAGCGAGCATAAAGGAGAAATGATGACGCATAATATAGAAAAACGCATTAATAAAtt > 2:2423272/1‑91 (MQ=255) tACAAGTGTAGACGTTGAATGGTGGTGAGAGTGTGAGCGAGAATAAAGGAGAAATGATGACGCATAATATAGAAAAACGCATTAATAAAtt > 1:681593/1‑91 (MQ=255) tACAAGTGTAGACGTTGAATGGTGGTGAGAGTGTGAGCGAGAATAAAGGAGAAATGATGACGCATAATATAGAAAAACGCATTAATAAAtt > 1:1704615/1‑91 (MQ=255) aCAAGTGTAGACGTTGAATGGTGGTGAGAGTGTGAGCGAGAATAAAGGAGAAATGATGACGCATAATATAGAAAAACGCATTAATAAATTa < 1:2176914/91‑1 (MQ=255) aCAAGTGTAGACGTTGAATGGTGGTGAGAGTGTGAGCGAGAATAAAGGAGAAATGATGACGCATAATATAGAAAAACGCATTAATAAATTa > 2:2060697/1‑91 (MQ=255) aCAAGTGTAGACGTTGAATGGTGGTGAGAGTGTGAGCGAGAATAAAGGAGAAATGATGACGCATAATATAGAAAAACGCATTAATAAATTa < 2:1671761/91‑1 (MQ=255) aCAAGTGTAGACGTTGAATGGTGGTGAGAGTGTGAGCGAGAATAAAGGAGAAATGATGACGCATAATATAGAAAAACGCATTAATAAATTa < 1:871133/91‑1 (MQ=255) cAAGTGTAGACGTTGAATGGTGGTGAGAGTGTGAGCGAGAATAAAGGAGAAATGATGACGCATAATATAGAAAAACGCATTAATAAATTaa > 2:2828845/1‑91 (MQ=255) aaGTGTAGACGTTGAATGGTGGTGAGAGTGTGAGCGAGAATAAAGGAGAAATGATGACGCATAATATAGAAAAACGCATTAATAAATTaaa < 2:1290000/91‑1 (MQ=255) | AATACTTGGAATTTATTTCACAAAAAATAGATGGCGATAAGTTAACCAAAGAAGATTCATTATGATTTTACTAATCAAAAAACGTCTACAAGTGTAGACGTTGAATGGTGGTGAGAGTGTGAGCGAGAATAAAGGAGAAATGATGACGCATAATATAGAAAAACGCATTAATAAATTAAA > USA300TCH1516_ALE/2126203‑2126382 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |