| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 2,133,490 | A→T | 5.6% | intergenic (+334/+38) | dapE → / ← USA300HOU_RS10885 | putative succinyl‑diaminopimelate desuccinylase/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 2,133,490 | 0 | A | T | 5.6% | 1047.7 / 37.3 | 307 | intergenic (+334/+38) | dapE/USA300HOU_RS10885 | putative succinyl‑diaminopimelate desuccinylase/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (160/129); new base T (6/11); total (166/141) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.34e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.57e-01 | |||||||||||
Only 100 of 322 total aligned reads displayed.
AAAGGAATGGGACATAAATCCCTAGAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACTTTATATTTCATAAGTACTATTTTATTGT > USA300TCH1516_ALE/2133400‑2133580 | aaaGGAATGGGACATAAATCCCTAGAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAaata > 1:3414365/1‑91 (MQ=255)aaaGGAATGGGACATAAATCCCTAGAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAaata > 1:1327507/1‑91 (MQ=255) aGGAACGGGACATAAATCCCTACAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAaataat < 2:3196641/91‑1 (MQ=255) ggAATGGGACATAAATCCCTAGAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAAtt > 1:2112150/1‑91 (MQ=255) ggAATGGGACATAAATCCCTAGAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAAtt < 2:2388160/91‑1 (MQ=255) gAATGGGACATAAATCCCTAGAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAAttt > 1:3133174/1‑91 (MQ=255) gAATGGGACATAAATCCCTAGAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAAttt > 1:2127797/1‑91 (MQ=255) aTGGGACATAAATCCCTAGAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTt‑at > 1:1519022/1‑91 (MQ=255) aTGGGACATAAATCCCTAGAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTt‑at > 2:3625381/1‑91 (MQ=255) aTGGGACATAAATCCCTAGAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTAT‑AAATTAtttgat < 1:3880461/91‑4 (MQ=25) aTGGGACATAAATCCCTAGAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTAT‑AAATTAtttgat < 1:1790172/91‑4 (MQ=25) gggACATAAATCCCTAGAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAg > 2:3456360/1‑91 (MQ=255) ggACATAAATCCCTAGAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGa > 1:551711/1‑91 (MQ=255) ggACATAAATCCCTAGAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTAT‑AAATTATTTGATAGa < 1:3274533/91‑1 (MQ=25) gACATAAATCCCTAGAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGaa < 1:689935/91‑1 (MQ=255) cATAAATCCCTAGAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAAt > 1:1556409/1‑91 (MQ=255) cATAAATCCCTAGAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAAt < 1:2971966/91‑1 (MQ=255) cATAAATCCCTAGAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAAt < 2:2252406/91‑1 (MQ=255) aTAAATCCCTAGAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATAAATTATTTG‑ATAGAAATc < 2:1834359/91‑1 (MQ=21) aTCCCTAGAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCt > 1:3222158/1‑91 (MQ=255) aTCCCTAGAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCt > 1:2198722/1‑91 (MQ=255) tCCCTAGAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCtt > 1:1719401/1‑91 (MQ=255) tCCCTAGAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCtt > 2:2495690/1‑91 (MQ=255) tCCCTAGAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTAT‑AAATTATTTGATAGAAATCAGCtt < 1:1947056/91‑1 (MQ=21) acccTAGAAAACAGCAGCTCAACGTGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCtt < 2:962192/90‑1 (MQ=255) gAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTAc > 1:2931472/1‑91 (MQ=255) gAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTAc > 1:2233744/1‑91 (MQ=255) gAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTAc > 2:3294760/1‑91 (MQ=255) gAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTAc < 2:134270/91‑1 (MQ=255) aaaaCAGCAGCTCAACGCGCTGTAAATTATCAAAGACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACa < 2:2087210/91‑1 (MQ=255) aaaaCAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACa > 2:3341545/1‑91 (MQ=255) aaCAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACAtt < 1:3700426/91‑1 (MQ=255) aCAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTg < 2:1962326/91‑1 (MQ=255) aCAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTg < 2:1999922/91‑1 (MQ=255) cagcagCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGt > 1:1596567/1‑91 (MQ=255) cagcagCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGt > 1:1476033/1‑91 (MQ=255) agcagcTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTc > 1:3801317/1‑91 (MQ=255) gcagcTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCt > 2:1733588/1‑91 (MQ=255) gcagcTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCt > 2:1611096/1‑91 (MQ=255) gcagcTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCt < 2:1060911/91‑1 (MQ=255) gcagcTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCt > 1:3635431/1‑91 (MQ=255) cagcTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTa > 2:2791298/1‑91 (MQ=255) cagcTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTa < 2:2910817/91‑1 (MQ=255) cagcTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTa > 1:2486554/1‑91 (MQ=255) cgttgAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAAc > 1:1839700/5‑91 (MQ=255) cAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAAc < 2:844244/91‑1 (MQ=255) ccGAGCTGTAAATTATCAAAAACATTTGAAAAAAGCTGTTTTCTATCAAATAATTT‑ATAGAAATCAGCTATTTTACATTGTCTAAGAACtt < 2:2711492/90‑1 (MQ=17) aCGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACtt < 1:3084406/91‑1 (MQ=255) aCGAGCTGTAAATTATCAAATACATTGGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCGTTTTTACATTGTCTAAGAACtt < 2:306429/91‑1 (MQ=255) tgAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTa > 2:1064753/2‑91 (MQ=255) gAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTaa < 1:1120310/91‑1 (MQ=255) aGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAAt < 1:226863/91‑1 (MQ=255) gCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAAtg < 2:605935/91‑1 (MQ=255) gCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAAtg > 1:1049093/1‑91 (MQ=255) cTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTGAtgt > 1:3299041/1‑91 (MQ=255) cTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAAtgt > 2:971393/1‑91 (MQ=255) tAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAAtgtctc < 1:1373893/91‑1 (MQ=255) aaTTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAAtgtctctg > 2:1513894/1‑91 (MQ=255) aTTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAAtgtctctgt > 2:3507103/1‑91 (MQ=255) ttATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAAtgtctctgtc < 1:2013882/91‑1 (MQ=255) aTCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAAtgtctctgtctc > 2:1256588/1‑91 (MQ=255) aTCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAAtgtctctgtctc < 2:3767843/91‑1 (MQ=255) aTCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAAtgtctctgtctc < 1:3764487/91‑1 (MQ=255) tCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATgtctctgtctct > 2:2144220/1‑91 (MQ=255) aaaTACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCttt > 1:61150/1‑91 (MQ=255) aaaTACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCttt > 2:2969114/1‑91 (MQ=255) aaaTACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCttt > 2:1488310/1‑91 (MQ=255) aaTACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTg > 1:2323483/1‑91 (MQ=255) aaTACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTCTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTg > 2:3904821/1‑91 (MQ=255) tACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGa < 1:2622998/91‑1 (MQ=255) aTTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACt > 1:2754370/1‑91 (MQ=255) tttGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACtt > 1:3471762/1‑91 (MQ=255) tttGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATCGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACtt > 2:3573269/1‑91 (MQ=255) ttGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACttt > 2:348777/1‑91 (MQ=255) tGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACTTta > 1:334619/1‑91 (MQ=255) gAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACTTtat < 1:753110/91‑1 (MQ=255) gAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACTTtat > 1:3528345/1‑91 (MQ=255) gAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACTTtat > 2:714766/1‑91 (MQ=255) aaaaaaGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACTTtata > 1:3634684/1‑91 (MQ=255) aaaaaGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACTTTatat > 2:1890422/1‑91 (MQ=255) aaaaGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACTTTATAtt < 1:1991404/91‑1 (MQ=255) aaGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACTTTATATTTc > 2:3937115/1‑91 (MQ=255) aaGCTGATTTCTAT‑AAATTATTTGATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACTTTATATTTc > 1:1264383/1‑91 (MQ=21) gATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTACGAACTTAATGTCTCTGTCTCTTTGGAACTATATATTTCATAAg > 1:3954696/1‑91 (MQ=255) aTTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACTTTATATTTCATAAGt < 1:477969/91‑1 (MQ=255) tttCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACTTTATATTTCATAAGTa > 1:389632/1‑91 (MQ=255) ttCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACTTTATATTTCATAAGTAc < 2:529879/91‑1 (MQ=255) ttCGATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGATCTTAATGTCTCTGTCTCTTTGGATCTTTATATTTCATAAGTAc < 1:1429200/91‑1 (MQ=255) tCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACTTTATATTTCATAAGTACt < 1:969087/91‑1 (MQ=255) cTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACTTTATATTTCATAAGTACTa < 1:2448606/91‑1 (MQ=255) tATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACTTTATATTTCATAAGTACTAt < 2:3160512/91‑1 (MQ=255) tataaaTTATTTGATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACTTTATCTTTCATAAGTACTAt > 2:417710/4‑91 (MQ=25) tCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACTTTATATTTCATAAGTACTAttt > 2:3253905/1‑91 (MQ=255) tCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACTTTATATTTCATAAGTACTAttt < 2:2565390/91‑1 (MQ=255) cAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACTTTATATTTCATAAGTACTAtttt > 2:3408277/1‑91 (MQ=255) aaaTAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACTTTATATTTCATAAGTACTATTTTa > 2:3838575/1‑91 (MQ=255) aaaTAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACTTTATATTTCATAAGTACTATTTTa > 2:819239/1‑91 (MQ=255) aataatTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACTTTATATTTCATAAGTACTATTTTAt > 1:101144/1‑91 (MQ=255) ataatTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGCCTCTTTGGAACTTTATATTTCATAAGTACTATTTTAtt > 2:457520/1‑91 (MQ=255) taatTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACTTTATATTTCATAAGTACTATTTTATTg > 1:1168860/1‑91 (MQ=255) | AAAGGAATGGGACATAAATCCCTAGAAAACAGCAGCTCAACGAGCTGTAAATTATCAAATACATTTGAAAAAAGCTGATTTCTATCAAATAATTT‑ATAGAAATCAGCTTTTTTACATTGTCTAAGAACTTAATGTCTCTGTCTCTTTGGAACTTTATATTTCATAAGTACTATTTTATTGT > USA300TCH1516_ALE/2133400‑2133580 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |