| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 2,211,673 | T→G | 8.2% | intergenic (+666/+147) | USA300HOU_RS11275 → / ← yidC | hypothetical protein/Membrane protein insertase YidC |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 2,211,673 | 0 | T | G | 8.2% | 640.5 / 38.3 | 194 | intergenic (+666/+147) | USA300HOU_RS11275/yidC | hypothetical protein/Membrane protein insertase YidC |
| Reads supporting (aligned to +/- strand): ref base T (96/80); new base G (9/7); total (106/88) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 205 total aligned reads displayed.
AATGACAACTCTGTTATTAACCACTTTTTACATACTGAAAACTCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGAAGCGAAAAATAATGTGCGCCCT > USA300TCH1516_ALE/2211583‑2211763 | aaTGACAACTCTGTTATTAACCACTTTTTACATACTGAAAACTCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACAtt < 1:1573574/91‑1 (MQ=255)aaTGACAACTCTGTTATTAACCACTTTTTACATACTGAAAACTCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACAtt > 2:2861185/1‑91 (MQ=255) aTGACAACTCTGTTATTAACCACTTTTTACATACTGAAAACTCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACAttt < 2:2392137/91‑1 (MQ=255) aTGACAACTCTGTTATTAACCACTTTTTACATACTGAAAACTCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACAttt < 2:2618816/91‑1 (MQ=255) aTGACAACTCTGTTATTAACCACTTTTTACATACTGAAAACTCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACAttt < 1:1990339/91‑1 (MQ=255) tGACAACTCTGTTATTAACCACTTTTTACATACTGAAAACTCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTg > 2:1921324/1‑91 (MQ=255) gACAACTCTGTTATTAACCACTTTTTACATACTGAAAACTCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGa > 2:3355236/1‑91 (MQ=255) gACAACTCTGTTATTAACCACTTTTACCCTACTGAAAACGCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGa > 1:1791217/1‑91 (MQ=255) aCAACTCTGTTATTAACCACTTTTTACATACTGAAAACTCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGaa < 1:2779262/91‑1 (MQ=255) aCAACTCTGTTATTAACCACTTTTTACATACTGAAAACTCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGaa < 2:1786425/91‑1 (MQ=255) cAACTCTGTTATTAACCACTTTTTACATACTGAAAACTCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGaaa > 1:3491724/1‑91 (MQ=255) cAACTCTGTTATTAACCACTTTTTACATACTGAAAACTCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGaaa > 1:3491773/1‑91 (MQ=255) ctctGTTATTAACCACTTTTTACATACTGAAAACTCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAa‑tca > 2:1519977/1‑91 (MQ=255) ctctGTTATTAACCACTTTTTACATACTGAAAACTCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAa‑tca > 2:531041/1‑91 (MQ=255) tctGTTATTAACCACTTTTTACATACTGAAAACTCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAa‑tcat < 2:1691108/91‑1 (MQ=255) ctGTTATTAACCACTTTTTACATACTGAAAACTCGTTAATATTATTTCAAATAAAAACAGCAGTAAGATGA‑TTTCAAATGTGAAAGtcatc < 2:2332198/91‑1 (MQ=21) tGTTATTAACCACTTTTTACATACTGAAAACTCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCt > 1:996754/1‑91 (MQ=255) tGTTATTAACCACTTTTTACATACTGAAAACTCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCt > 1:762118/1‑91 (MQ=255) tGTTATTAACCACTTTTTACATACTGAAAACTCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCt > 1:676353/1‑91 (MQ=255) tGTTATTAACCACTTTTTACATACTGAAAACTCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCt < 2:1384482/91‑1 (MQ=255) taACCACTTTTTACATACTGAAAACTCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTActgc < 2:2782057/91‑1 (MQ=255) taACCACTTTTTACATACTGAAAACTCGTTAATATTATTTCAAATAAAAACAGCAGTAAGATGA‑TTTCAAATGTGAAAGTCATCCTActgc < 1:3071617/91‑1 (MQ=17) aaCCACTTTTTACATACTGAAATCTCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTActgct < 2:2084770/91‑1 (MQ=255) aCCACTTTTTACATACTGAAAACTCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTActgctg < 2:3758978/91‑1 (MQ=255) ccACTTTTTACATACTGAAAACTCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGt > 1:1720526/1‑91 (MQ=255) ccACTTTTTACATACTGAAAACTCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGt > 2:1211834/1‑91 (MQ=255) ccACTTTTTACATACTGAAAACTCGTTAATATTACTTCAAATAAAAACAGCAGTAGGATGACTTTCACCTTTGAAA‑TCATCCTCCTGCTGt > 2:1072612/1‑91 (MQ=255) cACTTTTTACATACTGAAAACTCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGtt < 2:683022/91‑1 (MQ=255) aCTTTTTACATACTGAAAACTCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGttt < 1:337939/91‑1 (MQ=255) cTTTTTACATACTGAAAACTCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGttta < 2:501737/91‑2 (MQ=255) cTTTTTACATACTGAAAACTCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTc > 2:1998699/1‑91 (MQ=255) cTTTTTACATACTGAAAACTCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTc < 1:316110/91‑1 (MQ=255) cTTTTTACATACTGAAAACTCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTc < 2:1189645/91‑1 (MQ=255) ttACATACTGAAAACTCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTAtt > 2:1679845/1‑91 (MQ=255) ttACATACTGAAAACTCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTAtt > 2:1858365/1‑91 (MQ=255) tACATACTGAAAACTCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTAttt > 2:1845697/1‑91 (MQ=255) aCATACTGAAAACTCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTa < 1:2166019/91‑1 (MQ=255) cATACTGAAAACTCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTAt > 1:1690566/1‑91 (MQ=255) aTACTGAAAACTCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATc < 2:2407825/91‑1 (MQ=255) aTACTGAAAACTCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATc < 2:708263/91‑1 (MQ=255) tACTGAAAACTCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATCTGAAA‑TCATCTTACTGCTGTTTCTATTTATca > 1:3364436/1‑91 (MQ=255) aCTGAAAACTCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATcac > 2:3029883/1‑91 (MQ=255) cTGAAAACTCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATcaca < 2:2563653/91‑1 (MQ=255) aaCTCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGGCTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATATATCACATATTg < 2:3462046/91‑1 (MQ=255) aaCTCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTg < 2:2730562/91‑1 (MQ=255) aCTCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGt < 1:544812/91‑1 (MQ=255) aCTCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGt < 1:370999/91‑1 (MQ=255) cTCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGta < 1:1604078/91‑1 (MQ=255) tCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGtat > 1:2888759/1‑91 (MQ=255) gTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATaa > 2:146981/1‑91 (MQ=255) gTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATaa > 2:3490508/1‑91 (MQ=255) ttAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAAt > 1:1866684/1‑91 (MQ=255) aaTATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAAtgt < 2:864767/91‑1 (MQ=255) aaTATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAAtgt < 1:3259578/91‑1 (MQ=255) atatTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAAtgtg < 1:3907303/91‑1 (MQ=255) tattatTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGa < 1:959374/91‑1 (MQ=255) tattatTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGa < 2:2533879/91‑1 (MQ=255) ttattTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGaca > 1:1053891/1‑91 (MQ=255) attTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACt > 1:3580974/1‑91 (MQ=255) tttCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTa < 2:3922191/91‑1 (MQ=255) tttCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTa < 2:2354220/91‑1 (MQ=255) ttCAGATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTaa < 2:2689392/91‑1 (MQ=255) ttCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTaa < 1:1597155/91‑1 (MQ=255) cAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGt < 2:3211635/91‑1 (MQ=255) cAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGt > 1:568899/1‑91 (MQ=255) aaaTAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGtt > 2:127028/1‑91 (MQ=255) aaTAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGttt < 2:60826/91‑1 (MQ=255) aaTAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGttt > 2:1179118/1‑91 (MQ=255) aaTAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGttt > 2:802669/1‑91 (MQ=255) tAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCg > 1:2465573/1‑91 (MQ=255) agaaaCAGCAGTAAGATGA‑TTTCAAATGTGAAAGTCATCCTACTGCTGTTTTTATTTATCACATATTGTATAATGTGACACTAAGTTTCGc > 1:2339208/3‑91 (MQ=11) aaaaaCAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGc > 1:2245449/1‑91 (MQ=255) gaaaCAGCAGTAAGATGA‑TTTCAAATGTGAAAGTCATCCTACTGCTGTTTTTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCt > 1:1158714/2‑91 (MQ=11) aaaaCAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCt > 1:73409/1‑91 (MQ=255) aaaCAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTa > 1:2633553/1‑91 (MQ=255) aaCAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCGCATATTGTATAATGTGACACTAAGTTTCGCTAt > 1:432940/1‑91 (MQ=255) aCAGCAGTAAGATGA‑TTTCAAATGTGAAAGTCATCCTACTGCTGTTTTTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTAtt > 2:2914965/1‑91 (MQ=14) agcagTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGa > 1:1849712/1‑91 (MQ=255) agcagTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGa > 1:2074786/1‑91 (MQ=255) agcagTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGa > 1:2558705/1‑91 (MQ=255) gcagTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGaa < 2:1613635/91‑1 (MQ=255) gcagTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGaa > 1:2894558/1‑91 (MQ=255) cagTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGAAg > 1:1237846/1‑91 (MQ=255) cagTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGAAg > 2:2149894/1‑91 (MQ=255) agTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGAAGc < 1:1040281/91‑1 (MQ=255) agTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGAAGc > 1:3006682/1‑91 (MQ=255) gTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGAAGCg < 2:329944/91‑1 (MQ=255) gTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGAAGCg < 1:3572804/91‑1 (MQ=255) atgatttCAAATGTGAAAGTCATCCTACTGCTGTCTGTATTTATCACATACTGTCTAATGTGACACTAAGTTTCGCTCTTTAAGCGcaaaa > 2:2496526/5‑91 (MQ=12) gACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGAAGCGAAAaata > 1:1351728/1‑91 (MQ=255) atttCAAATGTGAAAGTCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGAAGCGAAAaataa > 2:1430027/2‑91 (MQ=37) ttCACATTGGGAA‑TCATCGTACTGCTGTTTCTATTTATCACATATTCTATAATGTGACACTAAGTTTCGCTATTGAAGCGAAAAATAAtgt < 1:1305044/91‑1 (MQ=255) tCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACAGTAAGTTTCGCTATTGAAGCGAAAAATAAtgtg < 2:3886122/91‑1 (MQ=255) cacaTTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATACTGTGACACTAAGTTTCGCTATTGAAGCGAAAAATAATGTgc < 1:3428194/91‑1 (MQ=255) cacaTTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGAAGCGAAAAATAATGTgc > 1:1909017/1‑91 (MQ=255) acaTTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGAAGCGAAAAATAATGTgcg < 2:3791553/91‑1 (MQ=255) acaTTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGAAGCGAAAAATAATGTgcg > 2:165089/1‑91 (MQ=255) caTTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGAAGCGAAAAATAATGTgcgc > 1:1248007/1‑91 (MQ=255) caTTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGAAGCGAAAAATAATGTgcgc < 1:3837903/91‑1 (MQ=255) ttGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGAAGCGAAAAATAATGTGCGCCCt > 2:2243891/1‑91 (MQ=255) | AATGACAACTCTGTTATTAACCACTTTTTACATACTGAAAACTCGTTAATATTATTTCAAATAAAAACAGCAGTAGGATGACTTTCACATTTGAAA‑TCATCTTACTGCTGTTTCTATTTATCACATATTGTATAATGTGACACTAAGTTTCGCTATTGAAGCGAAAAATAATGTGCGCCCT > USA300TCH1516_ALE/2211583‑2211763 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |