| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 2,424,608 | A→G | 6.2% | intergenic (‑166/+62) | USA300HOU_RS12490 ← / ← USA300HOU_RS12495 | hypothetical protein/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 2,424,608 | 0 | A | G | 6.2% | 728.4 / 23.2 | 242 | intergenic (‑166/+62) | USA300HOU_RS12490/USA300HOU_RS12495 | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (84/137); new base G (7/8); total (97/145) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.87e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.10e-01 | |||||||||||
Only 100 of 246 total aligned reads displayed.
CCTGTCGATGATTGATTCACAATAGCACGTGATTTTTTTGTTTTTCAATATTATTCATTTATTCCATCAAAAACACCCTTTTTAATTTTTACAAAAATT‑AAAAAAAGTGCTCCTACACTGCTTGCATGTAGAAACACTTTTTCATTGTAATGTTATTCTTCTCGAGACATACCTTTTAGCA > USA300TCH1516_ALE/2424518‑2424698 | cTGTCGATGATTGATTCACAATAGCACGTGATTTTTTTTTTTTTCTATATTTTTCATTTATTCCATCAAAAACACCCTTTTTAATTTTTAc > 2:880078/1‑91 (MQ=255) tGTCGATGATTGATTCACAATAGCACGTGATTTTTTTGTTTTTCAATATTATTCATTTATTCCATCAAAAACACCCTTTTTAATTTTTACa < 2:605825/91‑1 (MQ=255) tGTCGATGATTGATTCACAATAGCACGTGATTTTTTTGTTTTTCAATATTATTCATTTATTCCATCAAAAACACCCTTTTTAATTTTTACa > 1:283711/1‑91 (MQ=255) gTCGATGATTGATTCACAATAGCACGTGATTTTTTTGTTTTTCAATATTATTCATTTATTCCATCAAAAACACCCTTTTTAATTTTTACaa < 1:3455683/91‑1 (MQ=255) tCGATGATTGATTCACAATAGCACGTGATTTTTTTGTTTTTCAATATTATTCATTTATTCCATCAAAAACACCCTTTTTAATTTTTACaaa < 1:317285/91‑1 (MQ=255) tCGATGATTGATTCACAATAGCACGTGATTTTTTTGTTTTTCAATATTATTCATTTATTCCATCAAAAACACCCTTTTTAATTTTTACaaa > 1:1912643/1‑91 (MQ=255) tCGATGATTGATTCACAATAGCACGTGATTTTTTTGTTTTTCAATATTATTCATTTATTCCATCAAAAACACCCTTTTTAATTTTTACaaa > 1:2654619/1‑91 (MQ=255) gatgatTGATTCACAATAGCACGTGATTTTTTTGTTTTTCAATATTATTCATTTATTCCATCAAAAACACCCTTTTTAATTTTTACaaaaa < 1:3798695/91‑1 (MQ=255) gatgatTGATTCACAATAGCACGTGATTTTTTTGTTTTTCAATATTATTCATTTATTCCATCAAAAACACCCTTTTTAATTTTTACaaaaa < 2:1765843/91‑1 (MQ=255) atgatTGATTCACAATAGCACGTGATTTTTTTGTTTTTCAATATTATTCATTTATTCCATCAAAAACACCCTTTTTAATTTTTACAAAAAt < 1:1579969/91‑1 (MQ=255) atgatTGATTCACAATAGCACGTGATTTTTTTGTTTTTCAATATTATTCATTTATTCCATCAAAAACACCCTTTTTAATTTTTACAAAAAt > 1:1829841/1‑91 (MQ=255) tgattgatTCACAATAGCACGTGATTTTTTTGTTTTTCAATATTATTCATTTATTCCATCTAAAACACCCTTTTTAATTTTTACAAAAAtt > 2:123943/1‑91 (MQ=255) tgattgatTCACAATAGCACGTGATTTTTTTGTTTTTCAATATTATTCATTTATTCCATCAAAAACACCCTTTTTCATTTTTACAGAAAtt > 2:3651516/1‑91 (MQ=255) tgattgatTCACAATAGCACGTGATTTTTTTGTTTTTCAATATTATTCATTTATTCCATCAAAAACACCCTTTTTAATTTTTACAAAAAtt < 1:3625611/91‑1 (MQ=255) tgattgatTCACAATAGCACGTGATTTTTTTGTTTTTCAATATTATTCATTTATTCCATCAAAAACACCCTTTTTAATTTTTACAAAAAtt > 2:2534053/1‑91 (MQ=255) tgattgatTCACAATAGCACGTGATTTTTTTGTTTTTCAATATTATTCATTTATTCCATCAAAAACACCCTTTTTAATTTTTACAAAAAtt < 2:2159978/91‑1 (MQ=255) tgattgatTCACAATAGCACGTGATTTTTTTGTTTTTCAATATTATTCATTTATTCCATCAAAAACACCCTTTTTAATTTTTACAAAAAtt > 2:1992892/1‑91 (MQ=255) tgattgagTCACAGTAGCACGTGATTTGTTTGTTTTTCAATATTATTCATTTAGTCCATCAAAGACACCCTTTTTAATTTTTAAAAAAAtt < 2:1529319/91‑1 (MQ=255) gattgattCACAATAGCACGTGATTTTTTTGTTTTTCAATATTATTCATTTATTCCATCAAAAACACCCTTTTTAATTTTTACAAAAATT‑a < 1:3899268/91‑1 (MQ=255) attgattCACAATAGCTCGTGATTTTTTTGTTTTTCAATATTATTCAGTTATTCCATCAAAAACACCCTTTTTAATTTTTGTAAAAATT‑aa < 2:174445/91‑1 (MQ=255) attgattCACAATAGCACGTGATTTTTTTGTTTTTCTTTTTTTTTCATTTATTCCATCAAAAACACTCTTTTTATTTTTTACAAAAATT‑aa > 2:3554028/1‑91 (MQ=255) ttgattCACAATAGCACGTGATTTTTTTGTTTTTCAATATTATTCATTTATTCCATCAAAAACACCCTTTTTAATTTTTACAAAAATT‑aaa < 1:1326208/91‑1 (MQ=255) gattCGCAATAGCACGTGATTTTTTTGTTTTTCAATATTCTTCATTTATTCCATCAAAAACACCCTTTTTAATTTTTACAAAAATT‑aaaaa < 1:3672534/91‑1 (MQ=255) ttCACAATAGCACGTGATTTTTTTGTTTTTCAATATTATTCATTTATTCCATCAAAAACACCCTTTTTAATTTTTGTAAAAATT‑aaaaagg < 2:730235/91‑3 (MQ=38) ttCACAATAGCACGTGATTTTTTTGTTTTTCAATATTATTCATTTATTCCATCAAAAACACCCTTTTTAATTTTTACAAAAATT‑aaaaaaa > 1:802072/1‑91 (MQ=255) tCACAATAGCACGTGATTTTTTTGTTTTTCAATATTATTCATTTATTCCATCAAAAACACCCTTTTTAATTTTTACAAAAATT‑AAAAAAAg > 1:409756/1‑91 (MQ=255) cacaATAGCACGTGATTTTTTTGTTTTTCAATATTATTCATTTATTCCATCAAAAACACCCTTTTTAATTTTTACAAAAATT‑AAAAAAAGt > 1:2423659/1‑91 (MQ=255) cacaATAGCACGTGATTTTATTGTTTTTCAATATTATTCATTTATTCCATCAAAAACACCCTTTTTAATTTTTACAAAAATT‑AAAAAAAGt < 2:1452256/91‑1 (MQ=255) acaATAGCACGTGATTTTTTTGTTTTTCAATATTATTCATTTATTCCATCAAAAACACCCTCTTTACTTTTTACAAAAATT‑AAAACAAGTg > 1:3814604/1‑91 (MQ=255) caATAGCACGTGATTTTTTTTTTTTTTTTTATTATTCATTTATTCCATCAAAAACACCCTTTTTATTTTTTTCAAAAATT‑AAAAAAAGTGc > 2:1366174/1‑91 (MQ=255) caATAGCACGTGATTTTTTTGTTTTTCAATATTATTCATTTATTCCATCAAAAACACCCTTTTTAATTTTTACAAAAATT‑AAAAAAAGTGc < 1:2057545/91‑1 (MQ=255) aaTAGCACGTGATTTTTTTGTTTTTCTATATTATTCATTTATTCCATCAAAAACACCCTTTTTAATTTTTACAAAAATT‑AAAAAAAGTGCt > 2:1718015/1‑91 (MQ=255) aGCACGTGATTTTTTTGTTTTTCAATATTATTCATTTATTCCATCAAAAACACCCTTTTTAATTTTTACAAAAATT‑AAAAAAAGTGCTCCt < 1:83150/91‑1 (MQ=255) gCACTTTATTTTTTTTCTTATCAATATTATTCAATTATTCCATCAAAAACACCCTTTTTAATTTTTACAAAAATT‑AAAAAAAGTGCTCCTa < 2:523898/91‑1 (MQ=255) gCACGTGATTTTTTTGTTTTTCAATATTATTCATTTATTCCATCAAAAACACCCTTTTTAATTTTTACAAAAATT‑AAAAAAAGTGCTCCTa > 2:2988199/1‑91 (MQ=255) cACGTGATTTTTTTGTTTTTCTATATTATTCATTTATTCCATCAAAAACACCCTTTTTAATTTTTACAAAAATT‑AAAAAAAGTGCTCCTac > 2:1143780/1‑91 (MQ=255) cACGTGATTTTTTTGTTTTTCAATATTATTCATTTATTCCATCAAAAACACCCTTTTTAATTTTAAAAAAAAAA‑AAAAAAAGTGCTCCTac < 2:389119/91‑1 (MQ=255) cGTGATTTTTTTGTTTTTCAATATTATTCATTTATTCCATCAAAAACACCCTTTTTAATTTTTACAAAAATT‑AAAAAAAGTGCTCCTacac > 2:2791403/1‑91 (MQ=255) cGTGATTTTTTTGTTTTTCAATATTATTCATTTATTCCATCAAAAACACCCTTTTTAATTTTTACAAAAATT‑AAAAAAAGTGCTCCTacac > 1:1544422/1‑91 (MQ=255) gTGATTTTTTTGTTTTTCAATATTATTCATTTATTCCATCAAAAACACCCTTTTTAATTTTTACAAAAATT‑AAAAAAAGTGCTCCTACACt < 2:3154623/91‑1 (MQ=255) tGATTTTTTTGTTTTTCAATATTATTCATTTATTCCATCAAAAACACCCTTTTTAATTTTTACAAAAATT‑AAAAAAAGTGCTCCTACACTg < 2:3213788/91‑1 (MQ=255) tGATTTTTTTGTTTTTCAATATTATTCATTTATTCCATCAAAAACACCCTTTTTAATTTTTACAAAAATT‑AAAAAAAGTGCTCCTACACTg < 1:2998238/91‑1 (MQ=255) gATTTTTTTGTTTTTCAATATTATTCATTTATTCCATCAAAAACACCCTTTTTAATTTTGACAAAAATT‑AAAAAAAGTGCTCCTACACTGc < 1:3738518/91‑1 (MQ=255) tttttGTTTTTCAATATTATTCATTTATTCCATCAAAAACACCCTTTTTAATTTTTACAAAAATT‑AAAAAAAGTGCTCCTACACTGCTTGc > 1:880341/1‑91 (MQ=255) tttGTTTTTCAATATTATTCATTTATTCCATCAAAAACACCCTTTTTAATTTTTACAAAAATT‑AAAAAAAGTGCTCCTACACTGCTTGCAt > 1:2832693/1‑91 (MQ=255) ttGTTTTTCAATATTATTCATTTATTCCATCAAAAACACCCTTTTTAATTTTTACAAAAATT‑AAAAAAAGTGCTCCTACACTGCTTGCATg > 1:3481787/1‑91 (MQ=255) tGTTTTTCAATATTATTCATTTATTCCATCAAAAACACCCTTTTTAATTTTTACAAAAATT‑AAAAAAAGTGCTCCTACACTGCTTGCATGt < 2:1512691/91‑1 (MQ=255) gTTTTTCAATATTATTCATTTATTCCATCAAAAACACCCTTTTTAATTTTTACAAAAATT‑AAAAAAAGTGCTCCTACACTGCTTGCATGTa < 2:3452775/91‑1 (MQ=255) ttttCAATATTATTCATTTATTCCATCAAAAACACCCTTTTTAATTTTTACAAAAATT‑AAAAAAAGTGCTCCTACACTGCTTGCATGTAGa < 1:23355/91‑1 (MQ=255) ttttCAATATTATTCATTTATTCCATCAAAAACACCCTTTTTAATTTTTACAAAAATT‑AAAAAAAGTGCTCCTACACTGCTTGCATGTAGa < 1:1360238/91‑1 (MQ=255) tttCAATATTATTCATTTATTCCATCAAAAACACCCTTTTTAATTTTTACAAAAATT‑AAAAAAAGTGCTCCTACACTGCTTGCATGTAGaa < 1:2912233/91‑1 (MQ=255) ttCAATATTATTCATTTATTCCATCAAAAACACCCTTTTTAATTTTTACAAAAATT‑AAAAAAAGTGCTCCTACACTGCTTGCATGTAGaaa > 2:3351776/1‑91 (MQ=255) tCAATATTATTCATTTATTCCATCAAAAACACCCTTTTTAATTTTTACAAAAATT‑AAAAAAAGTGCTCCTACACTGCTTGCATGTAGAAac < 1:1048676/91‑1 (MQ=255) aaTATTATTCATTTATTCCATCAAAAACACCCTTTTTAATTTTTACAAAAATT‑AAAAAAAGTGCTCCTACACTGCTTGCATGTAGAAacac < 2:1819603/91‑1 (MQ=255) aaTATTATTCATTTATTCCATCAAAAACACCCTTTTTAATTTTTACAAAAATT‑AAAAAAAGTGCTCCTACACTGCTTGCATGTAGAAacac < 2:2394023/91‑1 (MQ=255) aaTATTATTCATTTATTCCATCAAAAACACCCTTTTTAATTTTTACAAAAATT‑AAAAAAAGTGCTCCTACACTGCTTGCATGTAGAAacac > 1:3126458/1‑91 (MQ=255) attattCATTTATTCCATCAAAAACACCCTTTTTAATTTTTACAAAAATT‑AAAAAAAGTGCTCCTACACTGCTTGCATGTAGAAACACttt < 2:15615/91‑1 (MQ=255) tattCATTTATTCCATCAAAAACACCCTTTTTAATTTTTACAAAAATT‑AAAAAAAGTGCTCCTACACTGCTTGCATGTAGAAACACttttt < 1:1253617/91‑1 (MQ=255) ttCATTTATTCCATCAAAAACACCCTTTTTAATTTTTACAAAAATT‑AAAAAAAGTGCTCCTACACTGCTTGCATGTAGAAACACTTTTTCa < 1:488276/91‑1 (MQ=255) ttCATTTATTCCATCAAAAACACCCTTGTTAATTTTTACAAAAATT‑AAAAAAAGTGCTCCTACACTGCTTGCATGTAGAAACACTTTTTCa < 2:3714811/91‑1 (MQ=255) tCATTTATTCCATATAAAACACCCTTTTTAATTTTTACAAAAATT‑AAAAAAAGTGCTCCATCACTGCTTGCATGTAGAAACACTTTTTCAt < 1:3566114/91‑1 (MQ=255) aTTTATTCCATCAAAAACACCCTTTTTAATTTTTACAAAAATT‑AAAAAAAGTGCTCCTACACTGCTTGCATGTAGAAACACTTTTTCATTg > 1:2158504/1‑91 (MQ=255) ttATTCCATCAAAAACACCCTTTTTAATTTTTACAAAAATT‑AAAAAAAGTGCTCCTACACTGCTTGCATGTAGAAACACTTTTTCATTGTa < 1:911015/91‑1 (MQ=255) tATTCCATCAAAAACACCCTTTTTAATTTTTACAAAAATT‑AAAAAAAGTGCTCCTACACTGCTTGCATGTAGAAACACTTTTTCATTGTaa > 2:2763598/1‑91 (MQ=255) ttCCATCAAAAACACCCTTTTTAATTTTTACAAAAATT‑AAAAAAAGTGCTCCTACACTGCTTGCATGTAGAAACACTTTTTCATTGTAATg > 2:3849067/1‑91 (MQ=255) tCCATCAAAAACACCCTTTTTAATTTTTACAAAAATT‑AAAAAAAGTGCTCCTACACTGCTTGCATGTAGAAACACTTTTTCATTGTAATGt < 2:701127/91‑1 (MQ=255) tCCATCAAAAACACCCTTTTTAATTTTTACAAAAATT‑AAAAAAAGTGCTCCTACACTGCTTGCATGTAGAAACACTTTTTCATTGTAATGt < 1:3581457/91‑1 (MQ=255) tCCATCAAAAACACCCTTTTTAATTTTTACAAAAATT‑AAAAAAAGTGCTCCTACACTGCTTGCATGTAGAAACACTTTTTCATTGTAATGt < 1:658066/91‑1 (MQ=255) ccATCAAAAACACCCTTTTTAATTTTTACAAAAATT‑AAAAAAAGTGCTCCTACACTGCTTGCATGTAGAAACACTTTTTCATTGTAATGtt < 1:1616647/91‑1 (MQ=255) cATCAAAAACACCCTTTTTAATTTTTACAAAAATT‑AAAAAAAGTGCTCCTACACTGCTTGCATGTAGAAACACTTTTTCATTGTAATGTTa > 2:1870809/1‑91 (MQ=255) cATCAAAAACACCCTTTTTAATTTTTACAAAAATT‑AAAAAAAGTGCTCCTACACTGCTTGCATGTAGAAACACTTTTTCATTGTAATGTTa > 1:2011073/1‑91 (MQ=255) aTCAAAAACACCCTTTTTAATTTTTACAAAAATT‑AAAAAAAGTGCTCCTACACTGCTTGCATGTAGAAACACTTTTTCATTGTAATGTTAt < 2:41854/91‑1 (MQ=255) aTCAAAAACACCCTTTTTAATTTTTACAAAAATT‑AAAAAAAGTGCTCCTACACTGCTTGCATGTAGAAACACTTTTTCATTGTAATGTTAt < 2:2424512/91‑1 (MQ=255) aTCAAAAACACCCTTTTTAATTTTTACAAAAATT‑AAAAAAAGTGCTCCTACACTGCTTGCATGTAGAAACACTTTTTCATTGTAATGTTAt < 1:1654003/91‑1 (MQ=255) aTCAAAAACACCCTTTTTAATTTTTACAAAAATT‑AAAAAAAGTGCTCCTACACTGCTTGCATGTAGAAACACTTTTTCATTGTAATGTTAt < 1:2591445/91‑1 (MQ=255) cAAAAACACCCTTTTTAATTTTTACAAAAATT‑AAAAAAAGTGCTCCTACACTGCTTGCATGTAGAAACACTTTTTCATTGTAATGTTAttc < 2:1632603/91‑1 (MQ=255) cAAAAACACCCTTTTTAATTTTTACAAAAATT‑AAAAAAAGTGCTCCTACACTGCTTGCATGTAGAAACACTTTTTCATTGTAATGTTAttc > 1:2310187/1‑91 (MQ=255) aaaCACCCTTTTTAATTTTTACAAAAATT‑AAAAAAAGTGCTCCTACACTGCTTGCATGTAGAAACACTTTTTCATTGTAATGTTAttcttc < 2:1995384/91‑1 (MQ=255) aaaCACCCTTTTTAATTTTTACAAAAATT‑AAAAAAAGTGCTCCTACACTGCTTGCATGTAGAAACACTTTTTCATTGTAATGTTAttcttc > 1:2107779/1‑91 (MQ=255) aaCACCCTTTTTAATTTTTACAAAAATT‑AAAATAAGTGCTCCTACACTGCTTGCATGTAGAAACACTTTTTCATTCTAATGTTATtcttct < 1:3366666/91‑1 (MQ=255) acCCTTTTTAATTTTTACAAAAATT‑AAAAAAAGTGCTCCTACACTGCTTGCATGTAGAAACACTTTTTCATTGTAATGTTATTCTTCTCga > 1:324148/1‑91 (MQ=255) ctttttttAATTTTTGTAAAAATT‑AAAAAGGGTGCTCCTACACTGCTTGCATGTAGAAACACTTTTTCATTGTAATGTTATTCTTCTCgag > 1:2966162/4‑91 (MQ=25) tttttAATTTTTGTAAAAATT‑AAAAAGGGTGCTCCTACACTGCTTGCATGTAGAAACACTTTTTCATTGTAATGTTATTCTTCTCGAGACa > 1:3923106/1‑91 (MQ=37) tttttAATTTTTACAAAAATT‑AAAAAAAGTGCTCCTACACTGCTTGCATGTAGAAACACTTTTTCATTGTAATGTTATTCTTCTCGAGACa < 2:3103851/91‑1 (MQ=255) tttttAATTTTTACAAAAATT‑AAAAAAAGTGCTCCTACACTGCTTGCATGTAGAAACACTTTTTCATTGTAATGTTATTCTTCTCGAGACa < 2:2610925/91‑1 (MQ=255) tttttAATTTTTACAAAAATT‑AAAAAAAGTGCTCCTACACTGCTTGCATGTAGAAACACTTTTTCATTGTAATGTTATTCTTCTCGAGACa > 1:3759096/1‑91 (MQ=255) ttttAATTTTTACAAAAATT‑AAAAAAAGTGCTCCTACACTGCTTGCATGTAGAAACACTTTTTCATTGTAATGTTATTCTTCTCGAGACAt < 2:605477/91‑1 (MQ=255) ttttAATTTTTACAAAAATT‑AAAAAAAGTGCTCCTACACTGCTTGCATGTAGAAACACTTTTTCATTGTAATGTTATTCTTCTCGAGACAt < 1:2439981/91‑1 (MQ=255) tttAATTTTTACAAAAATTAAAAAAAAGTGCTCCTACACTGCTTGCATGTAGAAACACTTTTTCATTGTAATGTTATTCTTCTCGAGACAt > 2:3398061/1‑91 (MQ=255) ttAATTTTTACAAAAATT‑AAAAAAAGTGCTCCTACACTGCTTGCATGTAGAAACACTTTTTCATTGTAATGTTATTCTTCTCGAGACATAc < 1:725986/91‑1 (MQ=255) tAATTTTTACAAAAATT‑AAAAAAAGTGCTCCTACACCGCTTGCATGTAGCAACACTTTTACATTGTAATGTTATTCTTCTCGAGACCTAcc > 1:785541/1‑91 (MQ=255) ttttttttTAAATATT‑AAAAAAATTGCTCCTACACTGCTTTCATGTTGATATACTTTTTCTTTGTACTGTTATTCTTCTCGTGACATACCt > 2:2916976/3‑91 (MQ=255) aaTTTTTGTAAAAATT‑AAAAAAAGTGCTCCTACACTGCTTGCATGTAGAAACACTTTTTCATTGTAATGTTATTCTTTTTGAGACATACCt > 2:3312298/1‑91 (MQ=255) aaTTTTTGTAAAAATT‑AAAAAAAGTGCTCCTACACTGCTTGCATGTAGAAACACTTTTTCATTGTAATGTTATTCTTCTCGAGACATACCt > 1:1727493/1‑91 (MQ=255) aaTTTTTACAAACATT‑AAAAAAAGTGCTCCTACACTGCTTGCATGTAGAAACACTTTTTCATTGTAATGTTATTCTTCTCGAGACATACCt > 2:2871406/1‑91 (MQ=255) aaTTTTTACAAAAATT‑AAAAAAAGTGCTCCTACACTGCTTGCATGTAGAAACACTTTTTCATTGTAATGTTATTCTTCTCGAGACATACCt > 2:1966745/1‑91 (MQ=255) aaTTTTTACAAAAATT‑AAAAAAAGTGCTCCTACACTGCTTGCATGTAGAAACACTTTTTCATTGTAATGTTATTCTTCTCGAGACATACCt < 1:365025/91‑1 (MQ=255) aTTTTTACAAAAATT‑AAAAAAAGTGCTCCTACACTGCTTGCATGTAGAAACACTTTTTCATTGTAATGTTATTCTTCTCGAGACATACCtt < 2:830405/91‑1 (MQ=255) ttttACAAAAATT‑AAAAAAAGTGCTCCTACACTGCTTGCATGTAGAAACACTTTTTCATTGTAATGTTATTCTTCTCGAGACATACCtttt > 2:3014933/1‑91 (MQ=255) tACAAAAATT‑AAAAAAAGTGCTCCTACACTGCTTGCATGTAGAAACACTTTTTCATTGTAATGTTATTCTTCTCGAGACATACCTTTTAGc > 1:1929527/1‑91 (MQ=255) | CCTGTCGATGATTGATTCACAATAGCACGTGATTTTTTTGTTTTTCAATATTATTCATTTATTCCATCAAAAACACCCTTTTTAATTTTTACAAAAATT‑AAAAAAAGTGCTCCTACACTGCTTGCATGTAGAAACACTTTTTCATTGTAATGTTATTCTTCTCGAGACATACCTTTTAGCA > USA300TCH1516_ALE/2424518‑2424698 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |