| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 2,424,609 | C→T | 7.9% | intergenic (‑167/+61) | USA300HOU_RS12490 ← / ← USA300HOU_RS12495 | hypothetical protein/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 2,424,609 | 0 | C | T | 7.9% | 721.4 / 28.3 | 241 | intergenic (‑167/+61) | USA300HOU_RS12490/USA300HOU_RS12495 | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base C (84/135); new base T (12/8); total (96/145) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 9.30e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 244 total aligned reads displayed.
CTGTCGATGATTGATTCACAATAGCACGTGATTTTTTTGTTTTTCAATATTATTCATTTATTCCATCAAAAACACCCTTTTTAATTTTTACAAAAATT‑AAAAAAAGTGCTCCTACACTGCTTGCATGTAGAAACACTTTTTCATTGTAATGTTATTCTTCTCGAGACATACCTTTTAGCA > USA300TCH1516_ALE/2424519‑2424698 | cTGTCGATGATTGATTCACAATAGCACGTGATTTTTTTTTTTTTCTATATTTTTCATTTATTCCATCAAAAACACCCTTTTTAATTTTTAc > 2:880078/1‑91 (MQ=255) tGTCGATGATTGATTCACAATAGCACGTGATTTTTTTGTTTTTCAATATTATTCATTTATTCCATCAAAAACACCCTTTTTAATTTTTACa > 1:283711/1‑91 (MQ=255) tGTCGATGATTGATTCACAATAGCACGTGATTTTTTTGTTTTTCAATATTATTCATTTATTCCATCAAAAACACCCTTTTTAATTTTTACa < 2:605825/91‑1 (MQ=255) tCGATGATTGATTCACAATAGCACGTGATTTTTTTGTTTTTCAATATTATTCATTTATTCCATCAAAAACACCCTTTTTAATTTTTACaaa < 1:317285/91‑1 (MQ=255) tCGATGATTGATTCACAATAGCACGTGATTTTTTTGTTTTTCAATATTATTCATTTATTCCATCAAAAACACCCTTTTTAATTTTTACaaa > 1:2654619/1‑91 (MQ=255) tCGATGATTGATTCACAATAGCACGTGATTTTTTTGTTTTTCAATATTATTCATTTATTCCATCAAAAACACCCTTTTTAATTTTTACaaa > 1:1912643/1‑91 (MQ=255) cGATGATTGATTCACAATAGCACGTGATTTTTTTGTTTTTAAATATTATTCATTTATTCCATCAAAAACACCCTTTTTAATTTTTACaaaa > 2:3254742/1‑91 (MQ=255) gatgatTGATTCACAATAGCACGTGATTTTTTTGTTTTTCAATATTATTCATTTATTCCATCAAAAACACCCTTTTTAATTTTTACaaaaa < 2:1765843/91‑1 (MQ=255) gatgatTGATTCACAATAGCACGTGATTTTTTTGTTTTTCAATATTATTCATTTATTCCATCAAAAACACCCTTTTTAATTTTTACaaaaa < 2:1554926/91‑1 (MQ=255) gatgatTGATTCACAATAGCACGTGATTTTTTTGTTTTTCAATATTATTCATTTATTCCATCAAAAACACCCTTTTTAATTTTTACaaaaa < 1:2418033/91‑1 (MQ=255) atgatTGATTCACAATAGCACGTGATTTTTTTGTTTTTCAATATTATTCATTTATTCCATCAAAAACACCCTTTTTAATTTTTACAAAAAt < 1:1579969/91‑1 (MQ=255) atgatTGATTCACAATAGCACGTGATTTTTTTGTTTTTCAATATTATTCATTTATTCCATCAAAAACACCCTTTTTAATTTTTACAAAAAt < 1:896247/91‑1 (MQ=255) tgattgatTCACAATAGCACGTGATTTTTTTGTTTTTCAATATTATTCATTTATTCCATCAAAAACACCCTTTTTCATTTTTACAGAAAtt > 2:3651516/1‑91 (MQ=255) tgattgatTCACAATAGCACGTGATTTTTTTGTTTTTCAATATTATTCATTTATTCCATCAAAAACACCCTTTTTAATTTTTGTAAAAAtt < 1:48079/91‑1 (MQ=255) tgattgatTCACAATAGCACGTGATTTTTTTGTTTTTCAATATTATTCATTTATTCCATCAAAAACACCCTTTTTAATTTTTACAAAAAtt > 2:2534053/1‑91 (MQ=255) tgattgatTCACAATAGCACGTGATTTTTTTGTTTTTCAATATTATTCATTTATTCCATCAAAAACACCCTTTTTAATTTTTACAAAAAtt > 2:1992892/1‑91 (MQ=255) tgattgagTCACAGTAGCACGTGATTTGTTTGTTTTTCAATATTATTCATTTAGTCCATCAAAGACACCCTTTTTAATTTTTAAAAAAAtt < 2:1529319/91‑1 (MQ=255) gattgattCACAATAGCACGTGATTTTTTTGTTTTTCAATATTATTCATTTATTCCATCAAAAACACCCTTTTTAATTTTTACAAAAATT‑a > 1:3450879/1‑91 (MQ=255) attgattCACAATAGCTCGTGATTTTTTTGTTTTTCAATATTATTCAGTTATTCCATCAAAAACACCCTTTTTAATTTTTGTAAAAATT‑aa < 2:174445/91‑1 (MQ=255) attgattCACAATAGCACGTGATTTTTTTGTTTTTCTTTTTTTTTCATTTATTCCATCAAAAACACTCTTTTTATTTTTTACAAAAATT‑aa > 2:3554028/1‑91 (MQ=255) ttgattCACAATAGCACGTGATTTTTTTGTTTTTCAATATTATTCATTTATTCCATCAAAAACACCCTTTTTAATTTTTACAAAAATT‑aaa < 1:1326208/91‑1 (MQ=255) tgattCACAATAGCACGTGATTTTTTTGTTTTTCAATATTATTCATTTATTCCATCAAAAACACCCTTTTTAATTTTTACAAAAATT‑aaaa < 1:3641045/91‑1 (MQ=255) ttCACAATAGCACGTGATTTTTTTGTTTTTCAATATTATTCATTTATTCCATCAAAAACACCCTTTTTAATTTTTGTAAAAATT‑aaaaagg < 2:730235/91‑3 (MQ=38) ttCACAATAGCACGTGATTTTTTTGTTTTTCAATATTATTCATTTATTCCATCAAAAACACCCTTTTTAATTTTTACAAAAATT‑aaaaaaa > 1:802018/1‑91 (MQ=255) acaATAGCACGTGATTTTTTTGTTTTTCAATATTATTCATTTATTCCATCAAAAACACCCTCTTTACTTTTTACAAAAATT‑AAAACAAGTg > 1:3814604/1‑91 (MQ=255) caATAGCACGTGATTTTTTTGTTTTTCAATATTATTCATTTATTCCATCAAAAACACCCTTTTTAATTTTTACAAAAATT‑AAAAAAAGTGc < 1:2057545/91‑1 (MQ=255) tAGCACGTGATTTTTTTGTTTTTCAATATTATTCATTTATTCCATCAAAAACACCCTTTTTAATTTTTACAAAAATT‑AAAAAAAGTGCTcc < 1:805720/91‑1 (MQ=255) gCACTTTATTTTTTTTCTTATCAATATTATTCAATTATTCCATCAAAAACACCCTTTTTAATTTTTACAAAAATT‑AAAAAAAGTGCTCCTa < 2:523898/91‑1 (MQ=255) cGTGATTTTTTTGTTTTTCAATATTATTCATTTATTCCATCAAAAACACCCTTTTTAATTTTTACAAAAATT‑TAAAAAAGTGCTCCTacac > 2:1124023/1‑91 (MQ=255) cGTGATTTTTTTGTTTTTCAATATTATTCATTTATTCCATCAAAAACACCCTTTTTAATTTTTACAAAAATT‑AAAAAAAGTGCTCCTacac > 1:1544422/1‑91 (MQ=255) gTGATTTTTTTGTTTTTCAATATTATTCATTTATTCCATCAAAAACACCCTTTTTAATTTTTACAAAAATT‑AAAAAAAGTGCTCCTACACt < 2:3154623/91‑1 (MQ=255) tGATTTTTTTGTTTTTCAATATTATTCATTTATTCCATCAAAAACACCCTTTTTAATTTTTACAAAAATT‑AAAAAAAGTGCTCCTACACTg < 1:2998238/91‑1 (MQ=255) tGATTTTTTTGTTTTTCAATATTATTCATTTATTCCATCAAAAACACCCTTTTTAATTTTTACAAAAATT‑AAAAAAAGTGCTCCTACACTg < 1:588365/91‑1 (MQ=255) taTTTTTTTGTTTTTCAATATTATTCATTTATTCTATCAAAAACACCCTTTTTAATTTTTACAAAAATT‑AAAAAAAGTGCTCCTACACTGc < 2:1292967/90‑1 (MQ=255) taTTTGTTTGTTTTACAAATTTATAAAGACATTCGAACATAAACCCCTATGTTCATTTTTACAGAAACG‑AAAAAAAGTGCTCCTACACTGc < 2:1509392/90‑1 (MQ=255) tttttttGTTTTTCAATATTATTCATTTATTCCATCAAAAACACCCTTTTTAATTTTTACAAAAATT‑AAAAAAAGTGCTCCTACACTGCtt < 1:3567962/91‑1 (MQ=255) ttttttGTTTTTCAATATTATTCATTTATTCCATCAAAAACACCCTTTTTAATTTTTACAAAAATT‑AAAAAAAGTGCTCCTACACTGCTTg > 1:3798602/1‑91 (MQ=255) ttGTTTTTCAATATTATTCATTTATTCCATCAAAAACACCCTTTTTAATTTTTACAAAAATT‑AAAAAAAGTGCTCCTACACTGCTTGCATg > 1:3481787/1‑91 (MQ=255) gTTTTTCAATATTATTCATTTATTCCATCAAAAACACCCTTTTTAATTTTTACAAAAATT‑AAAAAAAGTGCTCCTACACTGCTTGCATGTa < 2:3452775/91‑1 (MQ=255) ttttCAATATTATTCATTTATTCCATCAAAAACACCCTTTTTAATTTTTACAAAAATT‑AAAAAAAGTGCTCCTACACTGCTTGCATGTAGa < 1:1360238/91‑1 (MQ=255) ttttCAATATTATTCATTTATTCCATCAAAAACACCCTTTTTAATTTTTACAAAAATT‑AAAAAAAGTGCTCCTACACTGCTTGCATGTAGa < 1:23355/91‑1 (MQ=255) ttttCAATATTATTCATTTATTCCATCAAAAACACCCTTTTTAATTTTTACAAAAATT‑AAAAAAAGTGCTCCTACACTGCTTGCATGTAGa < 1:3083816/91‑1 (MQ=255) tttCAATATTATTCATTTATTCCATCAAAAACACCCTTTTTAATTTTTACAAAAATT‑AAAAAAAGTGCTCCTACACTGCTTGCATGTAGaa < 1:2911445/91‑1 (MQ=255) ttCAATATTATTCATTTATTCCATCAAAAACACCCTTTTTAATTTTTACAAAAATT‑AAAAAAAGTGCTCCTACACTGCTTGCATGTAGaaa > 2:3351776/1‑91 (MQ=255) ttCAATATTATTCATTTATTCCATCAAAAACACCCTTTTTAATTTTTACAAAAATT‑AAAAAAAGTGCTCCTACACTGCTTGCATGTAGaaa < 1:875633/91‑1 (MQ=255) tCAATATTATTCATTTATTCCATCAAAAACACCCTTTTTAATTTTTACAAAAATT‑AAAAAAAGTGCTCCTACACTGCTTGCATGTAGAAac < 1:1048676/91‑1 (MQ=255) aaTATTATTCATTTATTCCATCAAAAACACCCTTTTTAATTTTTACAAAAATT‑AAAAAAAGTGCTCCTACACTGCTTGCATGTAGAAacac < 2:1819603/91‑1 (MQ=255) aaTATTATTCATTTATTCCATCAAAAACACCCTTTTTAATTTTTACAAAAATT‑AAAAAAAGTGCTCCTACACTGCTTGCATGTAGAAacac < 2:2394023/91‑1 (MQ=255) attattCATTTATTCCATCAAAAACACCCTTTTTAATTTTTACAAAAATT‑AAAAAAAGTGCTCCTACACTGCTTGCATGTAGAAACACttt < 1:727327/91‑1 (MQ=255) attattCATTTATTCCATCAAAAACACCCTTTTTAATTTTTACAAAAATT‑AAAAAAAGTGCTCCTACACTGCTTGCATGTAGAAACACttt > 1:367196/1‑91 (MQ=255) tattCATTTATTCCATCAAAAACACCCTTTTTAATTTTTACAAAAATT‑AAAAAAAGTGCTCCTACACTGCTTGCATGTAGAAACACttttt < 1:1253617/91‑1 (MQ=255) attCATTTATTCCATCAAAAACACCCTTTTTAATTTTTACAAAAATT‑AAAAAAAGTGCTCCTACACTGCTTGCATGTAGAAACACTTTTTc > 1:701698/1‑91 (MQ=255) aTTTATTCCATCAAAAACACCCTTTTTAATTTTTACAAAAATT‑AAAAAAAGTGCTCCTACACTGCTTGCATGTAGAAACACTTTTTCATTg > 1:2158504/1‑91 (MQ=255) tATTCCATCAAAAACACCCTTTTTAATTTTTACAAAAATT‑AAAAAAAGTGCTCCTACACTGCTTGCATGTAGAAACACTTTTTCATTGTaa > 2:2763598/1‑91 (MQ=255) aTTCCATCAAAAACACCCTTTTCAATTTTTACAAAAATT‑AAAAAAAGTGCTCCTACACTGCTTGCATGTAGACACACTTTTTCATTGTAAt < 2:1175069/91‑1 (MQ=255) ttCCATCAAAAACGCCCTTTTTAATTTTTACAAAAATT‑AAAAAGAGTGCTCCTACACTGCTTGCATGTAGAAACACTTTTTCATTGTAATg < 1:3958734/91‑1 (MQ=255) ttCCATCAAAAACACCCTTTTTAATTTTTACAAAAATT‑AAAAAAAGTGCTCCTACACTGCTTGCATGTAGAAACACTTTTTCATTGTAATg > 2:3849067/1‑91 (MQ=255) tCCATCAAAAACACCCTTTTTAATTTTTACAAAAATT‑AAAAAAAGTGCTCCTACACTGCTTGCATGTAGAAACACTTTTTCATTGTAATGt < 2:701127/91‑1 (MQ=255) tCCATCAAAAACACCCTTTTTAATTTTTACAAAAATT‑AAAAAAAGTGCTCCTACACTGCTTGCATGTAGAAACACTTTTTCATTGTAATGt < 2:2998557/91‑1 (MQ=255) ccATCAAAAACACCCTTTTTAATTTTTACAAAAGTT‑AAAAAAAGTGCTCCTACACTGCTTGCATGTAGAAACACTTTTTCATTGTAATGtt < 1:3240183/91‑1 (MQ=255) ccATCAAAAACACCCTTTTTAATTTTTACAAAAATT‑AAAAAAAGTGCTCCTACACTGCTTGCATGTAGAAACACTTTTTCATTGTAATGtt < 1:1616647/91‑1 (MQ=255) cATCAAAAACACCCTTTTTAATTTTTACAAAAATT‑AAAAAAAGTGCTCCTACACTGCTTGCATGTAGAAACACTTTTTCATTGTAATGTTa < 2:2895505/91‑1 (MQ=255) cATCAAAAACACCCTTTTTAATTTTTACAAAAATT‑AAAAAAAGTGCTCCTACACTGCTTGCATGTAGAAACACTTTTTCATTGTAATGTTa > 1:2011073/1‑91 (MQ=255) cATCAAAAACACCCTTTTTAATTTTTACAAAAATT‑AAAAAAAGTGCTCCTACACTGCTTGCATGTAGAAACACTTTTTCATTGTAATGTTa > 2:1870809/1‑91 (MQ=255) aTCAAAAACACCCTTTTTAATTTTTACAAAAATT‑AAAAAAAGTGCTCCTACACTGCTTGCATGTAGAAACACTTTTTCATTGTAATGTTAt < 2:41854/91‑1 (MQ=255) aTCAAAAACACCCTTTTTAATTTTTACAAAAATT‑AAAAAAAGTGCTCCTACACTGCTTGCATGTAGAAACACTTTTTCATTGTAATGTTAt < 2:3750830/91‑1 (MQ=255) aTCAAAAACACCCTTTTTAATTTTTACAAAAATT‑AAAAAAAGTGCTCCTACACTGCTTGCATGTAGAAACACTTTTTCATTGTAATGTTAt < 1:2591444/91‑1 (MQ=255) aTCAAAAACACCCTTTTTAATTTTTACAAAAATT‑AAAAAAAGTGCTCCTACACTGCTTGCATGTAGAAACACTTTTTCATTGTAATGTTAt < 1:1929233/91‑1 (MQ=255) aTCAAAAACACCCTTTTTAATTTTTACAAAAATT‑AAAAAAAGTGCTCCTACACTGCTTGCATGTAGAAACACTTTTTCATTGTAATGTTAt < 1:1654003/91‑1 (MQ=255) cAAAAACACCCTTTTTAATTTTTACAAAAATT‑AAAAAAAGTGCTCCTACACTGCTTGCATGTAGAAACACTTTTTCATTGTAATGTTAttc < 2:1632603/91‑1 (MQ=255) cAAAAACACCCTTTTTAATTTTTACAAAAATT‑AAAAAAAGTGCTCCTACACTGCTTGCATGTAGAAACACTTTTTCATTGTAATGTTAttc > 1:2310187/1‑91 (MQ=255) cAAAAACACCCTTTTTAATTTTTACAAAAATT‑AAAAAAAGTGCTCCTACACTGCTTGCATGTAGAAACACTTTTTCATTGTAATGTTAttc < 2:3892335/91‑1 (MQ=255) aaaaaCACCCTTTTTAATTTTTACAAAAATT‑AAAAAAAGTGCTCCTACACTGCTTGCATGTAGAAACACTTTTTCATTGTAATGTTAttct < 1:3874368/91‑1 (MQ=255) aaaCACCCTTTTTAATTTTTACAAAAATT‑AAAAAAAGTGCTCCTACACTGCTTGCATGTAGAAACACTTTTTCATTGTAATGTTAttcttc > 1:2107779/1‑91 (MQ=255) aaaCACCCTTTGTAATTTTTACAAAAATT‑AAAAAAAGTGCTCCTACACTGCTTGCATGTAGAAACACTTTTTCATTGTAATGTTAttcttc < 2:1995370/91‑1 (MQ=255) aaCACCCTTTTTAATTTTTACAAAAATT‑AAAATAAGTGCTCCTACACTGCTTGCATGTAGAAACACTTTTTCATTCTAATGTTATtcttct < 1:3366666/91‑1 (MQ=255) ctttttttAATTTTTGTAAAAATT‑AAAAAGGGTGCTCCTACACTGCTTGCATGTAGAAACACTTTTTCATTGTAATGTTATTCTTCTCgag > 1:2966162/4‑91 (MQ=25) cTTTTTTTTTTTTTTTAAAATT‑AAAAAAAGTGCTCCTACACTGCTTGCATGTAGAAACACTTTTTCGTTGTAATGTTATTCTTCTATAGAc > 2:1670582/1‑91 (MQ=255) cTTTTTAATTTTTACAAAAATTAAAAAAAAGTGCTCCTACACTGCTTGCATGTAGAAACACTTTTTCATTGTAATGTTATTCTTCTCgaga < 1:3701749/91‑1 (MQ=255) cTTTTTAATTTTTACAAAAATT‑AAAAAAAGTGCTCCTACACTGCTTGCATGTAGAAACACTTTTTCATTGTAATGTTATTCTTCTCGAGAc > 1:3535372/1‑91 (MQ=255) tttttAATTTTTGTAAAAATT‑AAAAAGGGTGCTCCTACACTGCTTGCATGTAGAAACACTTTTTCATTGTAATGTTATTCTTCTCGAGACa > 1:3923079/1‑91 (MQ=38) tttttAATTTTTACAAAAATT‑AAAAAAAGTGCTCCTACACTGCTTGCATGTAGAAACACTTTTTCATTGTAATGTTATTCTTCTCGAGACa > 1:3759096/1‑91 (MQ=255) tttttAATTTTTACAAAAATT‑AAAAAAAGTGCTCCTACACTGCTTGCATGTAGAAACACTTTTTCATCGTAATGTTATTCTTCTCGAGACa > 2:2332445/1‑91 (MQ=255) tttttAATTTTTACAAAAATT‑AAAAAAAGTGCTCCTACACGGCTTGCATGTAGAAACACTTTTTCATTGTAATGTTATTCTTCTCGAGACa < 2:2610966/91‑1 (MQ=255) ttttAATTTTTACAAAAATT‑AAAAAAAGTGCTCCTACACTGCTTGCATGTAGAAACACTTTTTCATTGTAATGTTATTCTTCTCGAGACAt < 2:605477/91‑1 (MQ=255) ttttAATTTTTACAAAAATT‑AAAAAAAGTGCTCCTACACTGCTTGCATGTAGAAACACTTTTTCATTGTAATGTTATTCTTCTCGAGACAt < 1:2439981/91‑1 (MQ=255) tttAATTTTTACAAAAATTAAAAAAAAGTGCTCCTACACTGCTTGCATGTAGAAACACTTTTTCATTGTAATGTTATTCTTCTCGAGACAt > 2:3398061/1‑91 (MQ=255) ttttttttTAAATATT‑AAAAAAATTGCTCCTACACTGCTTTCATGTTGATATACTTTTTCTTTGTACTGTTATTCTTCTCGTGACATACCt > 2:2916976/3‑91 (MQ=255) aaTTTTTGTAAAAATT‑AAAAAGGGTGCTCCTACACTGCTTGCATGTAGAAACACTTTTTCATTGTAATGTTATTCTTCTCGAGACATACCt > 2:1370037/1‑91 (MQ=38) aaTTTTTGTAAAAATT‑AAAAAAAGTGCTCCTACACTGCTTGCATGTAGAAACACTTTTTCATTGTAATGTTATTCTTTTTGAGACATACCt > 2:3312298/1‑91 (MQ=255) aaTTTTTGTAAAAATT‑AAAAAAAGTGCTCCTACACTGCTTGCATGTAGAAACACTTTTTCATTGTAATGTTATTCTTCTCGAGACATACCt > 1:1727493/1‑91 (MQ=255) aaTTTTTACAAAAATT‑AAAAAAAGTGCTCCTACACTGCTTGCATGTAGAAACACTTTTTCATTGTAATGTTATTCTTCTCGAGACATACCt > 2:2866140/1‑91 (MQ=255) aaTTTTTACAAAAATT‑AAAAAAAGTGCTCCTACACTGCTTGCATGTAGAAACACTTTTTCATTGTAATGTTATTCTTCTCGAGACATACCt > 2:1966745/1‑91 (MQ=255) aTTTTTACAAAAATT‑AAAAAAAGTGCTCCTACACTGCTTGCATGTAGAAACACTTTTTCATTGTAATGTTATTCTTCTCGAGACATACCtt < 2:830405/91‑1 (MQ=255) tttttACAAAAATT‑AAAAAAAGTGCTCCTACACTGCTTGCATGTAGAAACACTTTTTCATTGTAATGTTATTCTTCTCGAGACATACCttt > 1:1811596/1‑91 (MQ=255) ttttACAAAAATT‑AAAAAAAGTGCTCCTACACTGCTTGCATGTAGAAACACTTTTTCATTGTAATGTTATTCTTCTCGAGACATACCtttt > 2:3014933/1‑91 (MQ=255) ttACAAAAATT‑AAAAAAAGTGCTCCTACACTGCTTGCATGTAGAAACACTTTTTCATTGTAATGTTATTCTTCTCGAGACATACCTTTTAg < 1:282604/91‑1 (MQ=255) tACAAAAATT‑AAAAAAAGTGCTCCTACACTGCTTGCATGTAGAAACACTTTTTCATTGTAATGTTATTCTTCTCGAGACATACCTTTTAGc > 1:3598868/1‑91 (MQ=255) tACAAAAATT‑AAAAAAAGTGCTCCTACACTGCTTGCATGTAGAAACACTTTTTCATTGTAATGTTATTCTTCTCGAGACATACCTTTTAGc < 2:3132142/91‑1 (MQ=255) aCAAAAATT‑AAAAAAAGTGCTCCTACACTGCTTGCATGTAGAAACACTTTTTCATTGTAATGTTATTCTTCTCGAGACATACCTTTTAGCa > 2:2426935/1‑91 (MQ=255) | CTGTCGATGATTGATTCACAATAGCACGTGATTTTTTTGTTTTTCAATATTATTCATTTATTCCATCAAAAACACCCTTTTTAATTTTTACAAAAATT‑AAAAAAAGTGCTCCTACACTGCTTGCATGTAGAAACACTTTTTCATTGTAATGTTATTCTTCTCGAGACATACCTTTTAGCA > USA300TCH1516_ALE/2424519‑2424698 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |