| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 2,519,951 | T→G | 8.2% | P227P (CCA→CCC) | narG ← | Respiratory nitrate reductase 1 alpha chain |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 2,519,951 | 0 | T | G | 8.2% | 431.8 / 30.5 | 142 | P227P (CCA→CCC) | narG | Respiratory nitrate reductase 1 alpha chain |
| Reads supporting (aligned to +/- strand): ref base T (55/75); new base G (10/2); total (65/77) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.23e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.42e-01 | |||||||||||
Only 100 of 157 total aligned reads displayed.
TAAAGGTACATTAGAGCCCCACATAATAATGTATGATGCGTTATACCAGTCACTTGATTCAGGCACATCTGTTTGCTCTCCCCAAATTTGTGGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAACTAAGCATTTCACCACCAAGCAAATTGATGAATCGAGCACCTGCTGCATAA > USA300TCH1516_ALE/2519861‑2520041 | aaGGTACATTAGAGCCCCACATAATAATGTATGATGCGTTATACCAGTCACTTGATTCAGGCACATCTGTTTGCTCTCCCCAAATTTGTgg < 1:1696669/91‑1 (MQ=255) aGGTACATTAGAGCCCCACATAATAATGTATGATGCGTTATACCAGTCACTTGATTCAGGCACATCTGTTTGCTCTCCACAAATTTGGGga < 2:1747660/91‑1 (MQ=255) ggTACATTAGAGCCCCACATAATAATGTATGATGCGTTATACCAGTCACTTGATTCAGGCACATCTGTTTGCTCTCCCCAAATTTGTGgag > 1:2468862/1‑91 (MQ=255) gTACATTAGAGCCCCACATAATAATGTATGATGCGTTATACCAGTCACTTGATTCAGGCACATCTGTTTGCTCTCCCCAAATTTGTGgaga < 2:1084312/91‑1 (MQ=255) tACATTAGAGCCCCACATAATAATGTATGATGCGTTATACCAGTCACTTGATTCAGGCACATCTGTTTGCTCTCCCCAAATTTGTGGagag < 2:2799566/91‑1 (MQ=255) tACATTAGAGCCCCACATAATAATGTATGATGCGTTATACCAGTCACTTGATTCAGGCACATCTGTTTGCTCTCCCCAAATTTGTGGagag < 2:2819831/91‑1 (MQ=255) aCATTAGAGCCCCACATAATAATGTATGATGCGTTATACCAGTCACTTGATTCAGGCACATCTGTTTGCTCTCCCCAAATTTGTGGAGAgg > 1:1787332/1‑91 (MQ=255) aCATTAGAGCCCCACATAATAATGTATGATGCGTTATACCAGTCACTTGATTCAGGCACATCTGTTTGCTCTCCCCAAATTTGTGGAGAgg > 1:3254060/1‑91 (MQ=255) cATTAGAGCCCCACATAATAATGTATGATGCGTTATACCAGTCACTTGATTCAGGCACATCTGTTTGCTCTCCCCAAATTTGTGGAGAGGc > 1:3436278/1‑91 (MQ=255) cATTAGAGCCCCACATAATAATGTATGATGCGTGATACCAGTCACGTGATTCAGGCACATCTGTTTGCTCTCCCCAAATTTGTGGAGAGGc < 2:3210685/91‑1 (MQ=255) aTTAGAGCCCCACATAATAATGTATGATGCGTTATACCAGTCACTTGATTCAGGCACATCTGTTTGCTCTCCCCAAATTTGTGGAGAGGCa > 2:2075236/1‑91 (MQ=255) aTTAGAGCCCCACATAATAATGTATGATGCGTTATACCAGTCACTTGATTCAGGCACATCTGTTTGCTCTCCCCAAATTTGTGGAGAGGCa > 2:2075252/1‑91 (MQ=255) ttAGAGCCCCACATAATAATGTATGATGCGTTATACCAGTCACTTGATTCAGGCACATCTGTTTGCTCTCCCCAAATTTGTGGAGAGGCAg < 2:661217/91‑1 (MQ=255) ttAGAGCCCCACATAATAATGTATGATGCGTTATACCAGTCACTTGATTCAGGCACATCTGTTTGCTCTCCCCAAATTTGTGGAGAGGCAg > 1:890547/1‑91 (MQ=255) ttAGAGCCCCACATAATAATGTATGATGCGTTATACCAGTCACTTGATTCAGGCACATCTGTTTGCTCTCCCCAAATTTGTGGAGAGGCAg < 2:661097/91‑1 (MQ=255) ttAGAGCCCCACATAATAATGTATGATGCGTTATACCAGTCACTTGATTCAGGCACATCTGTTTGCTCTCCCCAAATTTGTGGAGAGGCAg > 1:890183/1‑91 (MQ=255) tAGAGCCCCACATAATAATGTATGATGCGTTATACCAGTCACTTGATTCAGGCACATCTGTTTGCTCTCCCCAAATTTGTGGAGAGGCAgg < 1:2282168/91‑1 (MQ=255) agagCCCCACATAATAATGTATGATGCGTTATACCAGTCACTTGATTCAGGCACATCTGTTTGCTCTCCCCAAATTTGTGGAGAGGCAggt < 2:1684095/91‑1 (MQ=255) agCCCCACATAATAATGTATGATGCGTTATACCAGTCACTTGATTCAGGCACATCTGTTTGCTCTCCCCAAATTTGTGGAGAGGCAggtgg < 1:709556/91‑1 (MQ=255) agCCCCACATAATAATGTATGATGCGTTATACCAGTCACTTGATTCAGGCACATCTGTTTGCTCTCCCCAAATTTGTGGAGAGGCAggtgg < 2:1989534/91‑1 (MQ=255) caTAATAATGTATGATGCGTTATACCAGTCACTTGATTCAGGCACATCTGTTTGCTCTCCCCAAATTTGTGGAGAGGCAGGTGGTAAATCt < 2:1910924/91‑1 (MQ=255) ataataATGTATGATGCGTTATACCAGTCACTTGATTCAGGCACATCTGTTTGCTCTCCCCAAATTTGTGGAGAGGCAGGTGGTAAATCTg > 2:369901/1‑91 (MQ=255) taataaTGTATGATGCGTTATACCAGTCACTTGATTCAGGCACATCTGTTTGCTCTCCCCAAATTTGTGGAGAGGCAGGTGGTAAATCTGc > 1:3507989/1‑91 (MQ=255) ataatGTATGATGCGTTATACCAGTCACTTGATTCAGGCACATCTGTTTGCTCTCCCCAAATTTGTGGAGAGGCCGGTGGTAACTCTGCAt > 2:3778225/1‑91 (MQ=255) aatGTATGATGCGTTATACCAGTCACTTGATTCAGGCACATCTGTTTGCTCTCCCCAAATTTGTGGAGAGGCAGGTGGTAAATCTGCATAc > 2:628145/1‑91 (MQ=255) aatGTATGATGCGTTATACCAGTCACTTGATTCAGGCACATCTGTTTGCTCTCCCCAAATTTGTGGAGAGGCAGGTGGTAAATCTGCATAc > 1:1664357/1‑91 (MQ=255) gTATGATGCGTTATACCAGTCACTTGATTCAGGCACATCTGTTTGCTCTCCCCAAATTTGTGGAGAGGCAGGTGGTAAATCTGCATACCAg < 2:219433/91‑1 (MQ=255) tgatgCGTTATACCAGTCACTTGATTCAGGCACATCTGTTTGCTCTCCCCAAATTTGTGGAGAGGCAGGTGGTAAATCTGCATACCAGTCa > 2:3340131/1‑91 (MQ=255) gatgCGTTATACCAGTCACTTGATTCAGGCACATCTGTTTGCTCTCCCCAAATTTGTGGAGAGGCAGGTGGTAAATCTGCATACCAGTCAt > 1:2838275/1‑91 (MQ=255) gatgCGTTATACCAGTCACTTGATTCAGGCACATCTGTTTGCTCTCCCCAAATTTGTGGAGAGGCAGGTGGTAAATCTGCATACCAGTCAt > 2:1812596/1‑91 (MQ=255) gatgCGTTATACCAGTCACTTGATTCAGGCACATCTGTTTGCTCTCCCCAAATTTGTGGAGAGGCAGGTGGTAAATCTGCATACCAGTCAt > 1:3718319/1‑91 (MQ=255) gatgCGTTATACCAGTCACTTGATTCAGGCACATCTGTTTGCTCTCCCCAAATTTGTGGAGAGGCAGGTGGTAAATCTGCATACCAGTCAt < 2:798954/91‑1 (MQ=255) atgCGTTATACCAGTCACTTGATTCAGGCACATCTGTTTGCTCTCCCCAAATTTGTGGAGAGGCAGGTGGTAAATCTGCATACCAGTCATa < 1:2170745/91‑1 (MQ=255) tgCGTTATACCAGTCACTTGATTCAGGCACATCTGTTTGCTCTCCCCAAATTTGTGGAGAGGCAGGTTGTAAATCTGCATACCAGTCATaa > 1:1407250/1‑91 (MQ=255) gCGTTATACCAGTCACTTGATTCAGGCACATCTGTTTGCTCTCCCCAAATTTGTGGAGAGGCAGGTGGTAAATCTGCATACCAGTCATaaa < 1:1141558/91‑1 (MQ=255) ttATACCAGTCACTTGATTCAGGCACATCTGTTTGCTCTCCCCAAATTTGTGGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAAc < 2:1760988/91‑1 (MQ=255) tataCGAGTCACTTGATTCAGGCACATCTGTTTGCTCTCGCCAAATTTGTGGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAACt < 1:3672583/91‑1 (MQ=255) tataCCAGTCACTTGATTCAGGCACATCTGTTTGCTCTCCCCAAATTTGTGGAGAGGCAGGTGGTAAATCTGCATACCAGTCGTAAAAACt > 1:3457298/1‑91 (MQ=255) ataCCAGTCACTTGATTCAGGCACATCTGTTTGCTCTCCCCAAATTTGTGGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAACTa < 1:3154406/91‑1 (MQ=255) taCCAGTCACTTGATTCAGGCACATCTGTTTGCTCTCCCCAAATTTGTGGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAACTaa < 1:111994/91‑1 (MQ=255) taCCAGTCACGTGAGTCGGGCACATCTGTTGGCGCGCCCCAAATTTGTGGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAACTaa < 2:3347311/91‑1 (MQ=255) cAGTCACTTGATTCAGGCACATCTGTTTGCTCTCCCCAAATTTGTGGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAACTAAGCa > 2:3851377/1‑91 (MQ=255) cAGTCACTTGATTCAGGCACATCTGTTTGCTCTCCCCAAATTTGTGGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAACTAAGCa < 1:2966023/91‑1 (MQ=255) aGTCACTTGATTCAGGCACATCTGTTTGCTCTCCCCAAATTTGTGGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAACTAAGCAt < 1:2508250/91‑1 (MQ=255) aGTCACTTGATTCAGGCACATCTGTTTGCTCTCCCCAAATTTGTGGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAACTAAGCAt < 1:151441/91‑1 (MQ=255) aGTCACTTGATTCAGGCACATCTGTTTGCTCTCCCCAAATTTGTGGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAACTAAGCAt < 2:1492012/91‑1 (MQ=255) tCACTTGATTCAGGCACATCTGTTTGCTCTCCCCAAATTTGTGGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAACTAAGCAttt < 1:1267322/91‑1 (MQ=255) ttGATTCAGGCACATCTGTTTGCTCTCCCCAAATTTGTGGAGAGGCAGGTGGTAAATCAGCATACCAGTCATAGAAACTAAGCATTTcacc > 1:3381216/1‑91 (MQ=255) ttCAGGCACATCTGTTTGCTCTCCCCAAATTTGTGGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAACTAAGCATTTCAccacca > 2:1007350/1‑91 (MQ=255) tgaGGCACATCTGTTTGCGCTCCCCAAATTTGTGGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAACTAAGCATTTCACCACCaa < 2:3517667/89‑1 (MQ=255) tCAGGCACATCTGTTTGCTCTCCCCAAATTTGTGGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAACTAAGCATTTCACCACCaa < 1:355087/91‑1 (MQ=255) cAGGCACATCTGTTTGCTCTCCCCAAATTTGTGGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAACTAAGCATTTCACCACCAAg < 2:3933608/91‑1 (MQ=255) cAGGCACATCTGTTTGCTCTCCCCAAATTTGTGGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAACTAAGCATTTCACCACCAAg < 1:2905075/91‑1 (MQ=255) cAGGCACATCTGTTTGCTCTCCCCAAATTTGTGGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAACTAAGCATTTCACCACCAAg < 1:1885953/91‑1 (MQ=255) cAGGCACATCTGTTTGCTCTCCCCAAATTTGTCGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAACTAAACATTTCACCACCAAg < 1:3364849/91‑1 (MQ=255) aGGCACATCTGTTTGCTCTCCCCAAATTTGTGGAGAGGCAGGTGGTAAATCTGCATACCAGTCATCAAAACTAAGCATTTCAGCACCAAGc > 2:199912/1‑91 (MQ=255) aGGCACATCTGTTTGCTCTCCCCAAATTTGTGGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAACTAAGCATTTCACCACCAAGc > 2:1877837/1‑91 (MQ=255) aGGCACATCTGTTTGCTCTCCCCAAATTTGTGGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAACTAAGCATTTCACCACCAAGc < 2:1496544/91‑1 (MQ=255) ggCACATCTGTTTGCTCTCCCCAAATTTGTGGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAACTAAGCATTTCACCACCAAgaa > 1:2702064/1‑89 (MQ=255) ggCACATCTGTTTGCTCTCCCCAAATTTGTGGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAACTAAGCATTTCACCACCAAGCa < 2:3575206/91‑1 (MQ=255) gCACATCTGTTTGCTCTCCCCAAATTTGTGGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAACTAAGCATTTCACCACCAAGCaa < 2:3058005/91‑1 (MQ=255) agagcTGTTTGCTCTCCCCAGATGGGTGGAGAGCCAGGTGGTAAAACTGCATACCAGTCATAAAAACTAAGCATTTCACCACCAAGCAAAt < 2:1807917/87‑1 (MQ=255) acaTCTGTTTGCTCTCCCCAAATTTGTGGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAACTAAGCATTTCACCACCAAGCAAAt > 1:3316001/1‑91 (MQ=255) caTCTGTTTGCTCTCCCCAAATTTGTGGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAACTAAGCATTTCACCACCAAGCAAAtt > 1:2532148/1‑91 (MQ=255) caTCTGTTTGCTCTCCCCAAATTTGTGGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAACTAAGCATTTCACCACCAAGCAAAtt > 2:2479869/1‑91 (MQ=255) aTCTGTTTGCTCTCCCCAAATTTGTGGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAACTAAGCATTTCACCACCAAGCAAATtg < 2:1830606/91‑1 (MQ=255) tCTGTTTGCTCTCCCCAAATTTGTGGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAACTAAGCATTTCACCACCAAGCAAATtga < 2:1240972/91‑1 (MQ=255) tCTGTTTGCTCTCCCCAAATTTGTGGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAACTAAGCATTTCACCACCAAGCAAATtga > 2:2730555/1‑91 (MQ=255) tgattGCTCTCCCCAAATTTGTGGAGAGGCAGGTGGTAAATCTGCACACCAGTCATAAACCCTAAGCATTTCACCACCAAGCCAATcgatg > 2:1240380/4‑91 (MQ=255) tGTTTGCTCTCCCCAAATTTGTGGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAACTAAGCATTTCACCACCAAGCAAATtgatg < 1:2333830/91‑1 (MQ=255) gTTTGCTCTCCCCAAATTTGTGGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAACTAAGCATTTCACCACCAAGCAAATtgatga < 1:2668047/91‑1 (MQ=255) gTTTGCTCTCCCCAAATTTGTGGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAACTAAGCATTTCACCACCAAGCAAATtgatga < 2:2270214/91‑1 (MQ=255) tttGCTCTCCCCAAATTTGTGGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAACTAAGCATTTCACCACCAAGCAAATTGATGaa > 2:475137/1‑91 (MQ=255) ttGCTCTCCCCAAATTTGTGGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAACTAAGCATTTCACCACCAAGCAAATTGATGAAt > 2:962117/1‑91 (MQ=255) tGCTCTCCCCAAATTTGTGGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAACTAAGCATTTCACCACCAAGCAAATTGATGAATc < 1:587833/91‑1 (MQ=255) gCTCTCCCCAAATTTGTGGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAACTAAGCATTTCACCACCAAGCAAATTGATGAATCg < 2:3710217/91‑1 (MQ=255) gCTCTCCCCAAATTTGTGGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAACTAAGCATTTCACCACCAAGCAAATTGATGAATCg < 1:1280853/91‑1 (MQ=255) gCTCTCCCCAAATTTCTGGAGAGGCTTGTGGTAAATCTGCATACCAGTCATAAAAACTAAGCATTTCACCACCAAGCAAATTGATGAATCg < 2:3431200/91‑1 (MQ=255) ctctCCCCAAATTTGTGGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAACTAAGCATTTCACCACCAAGCAAATTGATGAATCGa < 2:3099927/91‑1 (MQ=255) ctctCCCCAAATTTGTGGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAACTAAGCATTTCACCACCAAGCAAATTGATGAATCGa < 2:3441604/91‑1 (MQ=255) tctcCCCAAATTTGTGGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAACTAAGCATTTCACCACCAAGCAAATTGATGAATCGAg < 1:2897422/91‑1 (MQ=255) ctcCCCAAATTTGTGGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAACTAAGCATTTCACCACCAAGCAAATTGATGAATCGAGc < 1:3801146/91‑1 (MQ=255) tcCCCAAATTTGTGGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAACTAAGCATTTCACCACCAAGCAAATTGATGAATCGAGCa > 2:2804732/1‑91 (MQ=255) tcCCCAAATTTGTGGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAACTAAGCATTTCACCACCAAGCAAATTGATGAATCGAGCa > 2:2648949/1‑91 (MQ=255) ccccAAATTTGTGGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAACTAAGCATTTCACCACCAAGCAAATTGATGAATCGAGCAc > 1:161418/1‑91 (MQ=255) ccacAAATTTGGGGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAACTAAGCATTTCACCACCAAGCAAATTGATGAATCGAGCAc > 1:2812133/4‑91 (MQ=255) cAAATTTGTGGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAACTAAGCATTTCACCACCAAGCAAATTGATGAATCGAGCACctg > 1:1764384/1‑91 (MQ=255) cAAATTTGGGGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAACTAAGCATTTCACCACCAAGCAAATTGATGAATCGAGCACctg > 2:23338/1‑91 (MQ=255) cAAATTTGGGGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAACTAAGCATTTCACCACCAAGCAAATTGATGAATCGAGCACctg > 1:1313634/1‑91 (MQ=255) tttGTGGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAACTAAGCATTTCACCACCAAGCAAATTGATGAATCGAGCACCtgctgc < 2:1678098/91‑1 (MQ=255) tttGGGGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAACTAAGCATTTCACCACCAAGCAAATTGATGAATCGAGCACCtgctgc > 2:1022967/1‑91 (MQ=255) ttGTGGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAACTAAGCATTTCACCACCAAGCAAATTGATGAATCGAGCACCTGCTGCa > 1:3431965/1‑91 (MQ=255) ttGTGGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAACTAAGCATTTCACCACCAAGCAAATTGATGAATCGAGCACCTGCTGCa > 1:135342/1‑91 (MQ=255) tgtgGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAACTAAGCATTTCACCACCAAGCAAATTGATGAATCGAGCACCTGCTGCAt < 1:3110407/91‑1 (MQ=255) gtgGAGAGGCAGGTGGTAAATCTGCATACCAGTCCTAAAAACTAAGCATTTCACCACCAAGCAAATTGATGAATCGAGCACCTGCTGCATa > 2:3593517/1‑91 (MQ=255) gtgGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAACTAAGCATTTCACCACCAAGCAAATTGATGAATCGAGCACCTGCTGCATa < 1:1307312/91‑1 (MQ=255) gtgGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAACTAAGCATTTCACCACCAAGCAAATTGATGAATCGAGCACCTGCTGCATa < 2:1346008/91‑1 (MQ=255) gtgGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAACTAAGCATTTCACCACCAAGCAAATTGATGAATCGAGCACCTGCTGCATa > 1:3170401/1‑91 (MQ=255) tgGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAACTAAGCATTTCACCACCAAGCAAATTGATGAATCGAGCACCTGCTGCATaa > 2:771568/1‑91 (MQ=255) tgGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAACTAAGCATTTCACCACCAAGCAAATTGATGAATCGAGCACCTGCTGCATaa > 1:2382229/1‑91 (MQ=255) | TAAAGGTACATTAGAGCCCCACATAATAATGTATGATGCGTTATACCAGTCACTTGATTCAGGCACATCTGTTTGCTCTCCCCAAATTTGTGGAGAGGCAGGTGGTAAATCTGCATACCAGTCATAAAAACTAAGCATTTCACCACCAAGCAAATTGATGAATCGAGCACCTGCTGCATAA > USA300TCH1516_ALE/2519861‑2520041 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |