| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 228,312 | T→C | 12.3% | intergenic (+158/+36) | ybbH_1 → / ← USA300TCH1516_00200 | putative HTH‑type transcriptional regulator YbbH/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 228,312 | 0 | T | C | 12.3% | 558.3 / 55.8 | 210 | intergenic (+158/+36) | ybbH_1/USA300TCH1516_00200 | putative HTH‑type transcriptional regulator YbbH/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (94/90); new base C (12/14); total (106/104) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 6.79e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 217 total aligned reads displayed.
TTGCTTGATGAAAAATTGTTGCTACAAGTTTGTAAAACTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGAATAATTTTAATGCTAAATGAACTAATACGAAGGTGCTAA > USA300TCH1516_ALE/228222‑228400 | ttGCTTGATGAAAAATTGTTGCTACAAGTTTGTAAAACTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGt > 2:893567/1‑91 (MQ=255) tGCTTGATGAAAAATTGTTGCTACAAGTTTGTAAAACTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGtt > 2:2052063/1‑91 (MQ=255) gCTTGATGAAAAATTGTTGCTACAAGTTTGTAAAACTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTc > 1:2577662/1‑91 (MQ=255) gCTTGATGAAAAATTGTTGCTACAAGTTTGTAAAACTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTc > 2:3760124/1‑91 (MQ=255) tgatgaAAAATTGTTGCTACAAGTTTGTAAAACTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGa < 1:2020201/91‑1 (MQ=255) atgaAAAATTGTTGCTACAAGTTTGTAAAACTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGCTCaaatc < 1:906821/91‑5 (MQ=255) atgaAAAATTGTTGCTACAAGTTTGTAAAACTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGCTCaaacc < 2:3464033/91‑5 (MQ=255) tgaAAAATTGTTGCTACAAGTTTGTAAAACTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGAttt < 1:1510219/91‑1 (MQ=255) aaaaaTTGTTGCTACAAGTTTGTAAAACTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGa < 2:2623760/91‑1 (MQ=255) aaaaaTTGTTGCTACAAGTTTGTAAAACTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGCTCAAATCTGa < 2:3174209/91‑1 (MQ=255) aaTTGTTGCTACAAGTTTGTAAAACTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAgct > 1:871221/1‑91 (MQ=255) aaTTGTTGCTACAAGCTTGTAAAACTTGCATAGAGGCTATTTTGAAAATTATAAAGGCGTGACAAATTAAAGCAACGTTCAGATTTGAgct > 2:3469563/1‑91 (MQ=255) aTTGTTGCTACAAGTTTGTAAAACTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAgctt < 2:2703232/91‑1 (MQ=255) aTTGTTGCTACAAGTTGGTAAAACTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGCTCAAATCTGAactt < 2:2294880/91‑1 (MQ=38) ttgttgCTACAAGTTTGTAAAACTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAgcttt < 1:1003991/91‑1 (MQ=255) tgttgCTACAAGTTTGTAAAACTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAgctttg > 1:1411439/1‑91 (MQ=255) tgttgCTACAAGTTTGTAAAACTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAgctttg < 2:3659894/91‑1 (MQ=255) tgttgCTACAAGTTTGTAAAACTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGCTCAAATCTGAactttg < 2:226184/91‑1 (MQ=38) tgttgCTACAAGTTTGTAAAACTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAAGTAAAGCAAAGCTCAAATCTGAactttg < 1:2775857/91‑1 (MQ=38) gttgCTACAAGTTTGTAAAACTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAgctttgc > 2:1738066/1‑91 (MQ=255) gttgCTACAAGTTTGTAAAACTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAgctttgc < 2:1588283/91‑1 (MQ=255) gttgCTACAAGTTTGTAAAACTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAgctttgc < 1:584602/91‑1 (MQ=255) gttgCTACAAGTTTGTAAAACTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAgctttgc > 2:3320724/1‑91 (MQ=255) ttgCTACAAGTTTGTAAAACTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAgctttgct > 2:820620/1‑91 (MQ=255) ttgCTACAAGTTTGTAAAACTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAgctttgct > 2:820387/1‑91 (MQ=255) tgCTACAAGTTTGTAAAACTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAgctttgctt > 1:2392126/1‑91 (MQ=255) tgCTACAAGTTTGTAAAACTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAgctttgctt > 2:1182062/1‑91 (MQ=255) gCTACAAGTTTGTAAAACTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAgctttgcttt > 1:601900/1‑91 (MQ=255) gCTACAAGTTTGTAAAACTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAgctttgcttt > 1:3810957/1‑91 (MQ=255) cTACAAGTTTGTAAAACTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCtttt > 1:1796489/1‑91 (MQ=255) tACAAGTTTGTAAAACTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCttttt < 2:2317010/91‑1 (MQ=255) cAAGTTTGTAAAACTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTc < 1:2614108/91‑1 (MQ=255) aGTTTGTAAAACTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCAt > 1:2089036/1‑91 (MQ=255) gTTTGTAAAACTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATa > 1:2408186/1‑91 (MQ=255) gTTTGTAAAACTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATa > 2:3388848/1‑91 (MQ=255) tttGTAAAACTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAg > 2:2927408/1‑91 (MQ=255) ttGTAAAACTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGa > 2:1944951/1‑91 (MQ=255) tGTAAAACTGACATAGAGGCTATTCTGAAAATGTGAAAGGCGTGACAAATTAAAGCAGAGTACAGATATGAGCTTTGCTTTTTTCATAggt > 2:3143194/1‑89 (MQ=255) gTAAAACTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATg > 1:35227/1‑91 (MQ=255) tAAAACTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATgg > 2:2728368/1‑91 (MQ=255) tAAAACTGGCATAGAGGCTATTTTG‑AAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGa > 1:3112240/1‑91 (MQ=255) aaaaCTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGa < 2:239595/91‑1 (MQ=255) aaaaCTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGa > 2:1520411/1‑91 (MQ=255) aaaaCTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGa > 2:2141611/1‑91 (MQ=255) aaCTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGaaa < 1:2728560/91‑1 (MQ=255) aCTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAAt < 1:3844955/91‑1 (MQ=255) aCTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAAt > 2:2073630/1‑91 (MQ=255) aCTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAAt < 2:182255/91‑1 (MQ=255) aCTGGCATAGAGGCTATTTTGAAAATGATAAACGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAAt > 2:3879803/1‑91 (MQ=255) cTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATGAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAAtt < 1:3949151/91‑1 (MQ=255) ggCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTaa < 1:3433214/91‑1 (MQ=255) gCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTaaa > 2:219599/1‑91 (MQ=255) gCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTAAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTaaa > 2:735361/1‑91 (MQ=255) tAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGc > 1:1880348/1‑91 (MQ=255) agagGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCt < 1:3598602/91‑1 (MQ=255) gCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTgaag < 2:1841492/91‑1 (MQ=255) cTATTTTGAAGATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTCTTTTCATAGATGGAAATTAAATGCTgaaga > 2:3532347/1‑91 (MQ=255) cTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTgaaga < 2:3110368/91‑1 (MQ=255) tATTTTGCAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTgaagaa < 2:3516496/91‑1 (MQ=255) aTTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGaat > 1:897710/1‑91 (MQ=255) aTTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGaat > 2:1134185/1‑91 (MQ=255) ttttGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGaata < 1:2208545/91‑1 (MQ=255) tttGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGaataa < 1:511954/91‑1 (MQ=255) ttGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGaataat > 1:2484987/1‑91 (MQ=255) gAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGAATAAttt > 1:876014/1‑91 (MQ=255) gAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGAATAAttt > 1:876304/1‑91 (MQ=255) aaaaTGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGAATAAtttt < 2:469478/91‑1 (MQ=255) aaaTGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGAATAATTTTa < 2:1047170/91‑1 (MQ=255) tAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGAATAATTTTAATGCTa > 1:959620/1‑91 (MQ=255) aaGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGCATAATTTTAATGCTaaa > 1:3381231/1‑91 (MQ=255) aaGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGAATAATTTTAATGCTaaa > 2:2587204/1‑91 (MQ=255) aGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGAATAATTTTAATGCTAAAt > 1:1243698/1‑91 (MQ=255) ggCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGAATAATTTTAATGCTAAATg < 1:3224443/91‑1 (MQ=255) gCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGAATAATTTTAATGCTAAATGa < 2:3578514/91‑1 (MQ=255) gTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGAATAATTTTAATGCTAAATGAAc > 2:49779/1‑91 (MQ=255) tGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGAATAATTTTAATGCTAAATGAACt < 2:2556204/91‑1 (MQ=255) aCAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGAATAATTTTAATGCTAAATGAACTaa < 2:1639523/91‑1 (MQ=255) cAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGAATAATTTTAATGCTAAATGAACTAAt < 2:2482179/91‑1 (MQ=255) cAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGAATAATTTTAATGCTAAATGAACTAAt < 1:1051019/91‑1 (MQ=255) aaaTTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGAATAATTTTAATGCTAAATGAACTAATa < 1:666967/91‑1 (MQ=255) aaaTTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGAATAATTTTAATGCTAAATGAACTAATa < 1:3765010/91‑1 (MQ=255) aaTTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGAATAATTTTAATGCTAAATGAACTAATAc < 2:642986/91‑1 (MQ=255) aTTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGAATAATTTTAATGCTAAATGAACTAATACg > 2:2136092/1‑91 (MQ=255) aTTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGAATAATTTTAATGCTAAATGAACTAATACg > 1:3067733/1‑91 (MQ=255) ttAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGAATAATTTTAATGCTAAATGAACTAATACGa < 1:317037/91‑1 (MQ=255) aaGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGAATAATTTTAATGCTAAATGAACTAATACGAAgg < 1:1120378/91‑1 (MQ=255) aaGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGAATAATTTTAATGCTAAATGAACTAATACGAAgg < 1:1299604/91‑1 (MQ=255) aaGCAAAGCTCAAATCTGAACTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGAATAATTTTAATGCTAAATGAACTAATACGAAgg > 2:1441126/1‑91 (MQ=37) aaGCAAAGCTCAAATCTGAACTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGAATAATTTTAATGCTAAATGAACTAATACGAAgg > 1:703156/1‑91 (MQ=37) aaGCAAAGCTCAAATCTGAACTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGAATAATTTTAATGCTAAATGAACTAATACGAAgg > 2:1607943/1‑91 (MQ=37) aGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGAATAATTTTAATGCTAAATGAACTAATACGAAGGt < 1:1799349/91‑1 (MQ=255) aGCAAAGCTCAAATCTGAACTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGAATAATTTTAATGCTAAATGAACTAATACGAAGGt > 2:417299/1‑91 (MQ=38) gCAAAGCTCAAATCTGAACTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGAATAATTTTAATGCTAAATGAACTAATACGAAGGTg > 2:100296/1‑91 (MQ=38) cAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGAATAATTTTAATGCTAAATGAACTAATACGAAGGTGc < 1:2433816/91‑1 (MQ=255) cAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGAATAATTTTAATGCTAAATGAACTAATACGAAGGTGc > 1:2880693/1‑91 (MQ=255) cAAAGCTCAAATCTGAACTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGAATAATTTTAATGCTAAATGAACTAATACGAAGGTGc > 1:187074/1‑91 (MQ=38) cAAAGCTCAAATCTGAACTTCGCTTTTTTCATAGATGGAAATAAAATGATGATGAATAATTTTAATGCTAAATGAACTAATACGAAGGAGc > 2:2526971/1‑91 (MQ=255) aaaGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGAATAATTTTAATGCTAAATGAACTAATACGAAGGTGCt > 1:933806/1‑91 (MQ=255) aaGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGAATAATTTTAATGCTAAATGAACTAATACGAAGGTGCTa > 1:3686696/1‑91 (MQ=255) aGTGCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGAATAATTTTAATGCTAAATGAACTAATACGAAGGTGCTaa < 1:164459/91‑1 (MQ=255) | TTGCTTGATGAAAAATTGTTGCTACAAGTTTGTAAAACTGGCATAGAGGCTATTTTGAAAATGATAAAGGCGTGACAAATTAAAGCAAAGTTCAGATTTGAGCTTTGCTTTTTTCATAGATGGAAATTAAATGCTGAAGAATAATTTTAATGCTAAATGAACTAATACGAAGGTGCTAA > USA300TCH1516_ALE/228222‑228400 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |