| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 2,780,409 | A→C | 5.2% | Y106* (TAT→TAG) | arcD_2 ← | Arginine/ornithine antiporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 2,780,409 | 0 | A | C | 5.2% | 791.8 / 28.0 | 229 | Y106* (TAT→TAG) | arcD_2 | Arginine/ornithine antiporter |
| Reads supporting (aligned to +/- strand): ref base A (117/100); new base C (3/9); total (120/109) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 7.32e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.97e-01 | |||||||||||
Only 100 of 232 total aligned reads displayed.
AGTAACGAGGCGACAATAACACTTGGTAATGTGTTGCCTCCTTTAAAAATCGGGAAAAAGTTACCTACTGCTGACATCAATAGTGTTGCATAGGCAACATTGCCTAAAAACGCTGAGAACCAATATCCCCAAGCACTGATAAATCCTACAAAATCGCCAAATCCTGCTTGAGCATAACTA > USA300TCH1516_ALE/2780320‑2780499 | agtaACGAGGCGACAATAACACTTGGTAATGTGTTGCCTCCTTTAAAAATCGGGAAAAAGTTACCTACTGCTGACATCAATAGTGTTGCAt < 1:3225544/91‑1 (MQ=255)agtaACGAGGCGAAAATAACACTTGGTAATGTGTTGCCTCCTTTAAAAATCGGGAAAATGTTACCTACTGCTGACATCAATAGTGTTGCAt < 2:3887337/91‑1 (MQ=255) gtaACGAGGCGACAATAACCCTTGGTGATGCCTTGCCTCCTGTAAAAAGCGCGAAAAAGTTACCTACTGCTCCCAGCAACAGTGTTGCATa > 2:2547480/1‑91 (MQ=255) gtaACGAGGCGACAATAACACTTGGTAATGTGTTGCCTCCTTTAAAAATCGGGAAAAAGTTACCTTCTGCTGACATCAATAGTGTTGCATa > 2:609552/1‑91 (MQ=255) gtaACGAGGCGACAATAACACTTGGTAATGTGTTGCCTCCTTTAAAAATCGGGAAAAAGTTACCTACTGCTGACATCAATAGTGTTGCATa > 1:3545059/1‑91 (MQ=255) gtaACGAGGCGACAATAACACTTGGTAATGTGTTGCCTCCTTTAAAAATCGGGAAAAAGTTACCTACTGCTGACATCAATAGTGTTGCATa > 1:370361/1‑91 (MQ=255) gtaACGAGGCGACAATAACACTTGGTAATGTGTTGCCTCCTTTAAAAATCGGGAAAAAGTTACCTACTGCTGACATCAATAGTGTTGCATa > 1:1669890/1‑91 (MQ=255) gtaACGAGGCGACAATAACACTTGGTAATGTGTTGCCTCCTTTAAAAATCGGGAAAAAGTTACCTACTGCTGACATCAATAGTGTTGCATa > 1:581353/1‑91 (MQ=255) gtaACGAGGCGACAATAACACTTGGTAATGTGTTGCCTCCTTTAAAAATCGGGAAAAAGTTACCTACTGCTGACATCAATAGTGTTGCATa > 1:1465489/1‑91 (MQ=255) taACGAGGCGACAATAACACTTGGTAATGTGTTGCCTCCTTTAAAAATCGGGAAAAAGTTACCTACTGCTGACATCAATAGTGTTGCATAg > 2:832701/1‑91 (MQ=255) aaCGAGGCGACAATAACACTTGGTAATGTGTTGCCTCCTTTAAAAATCGGGAAAAAGTTACCTACTGCTGACATCAATAGTGTTGCATAgg > 1:1151921/1‑91 (MQ=255) aaCGAGGCGACAATAACACTTGGTAATGTGTTGCCTCCTTTAAAAATCGGGAAAAAGTTACCTACTGCTGACATCAATAGTGTTGCATAgg > 1:1151395/1‑91 (MQ=255) aaCGAGGCGACAATAACACTTGGTAATGTGTTGCCTCCTTTAAAAATCGGGAAAAAGTTACCTACTGCTGACATCAATAGTGTTGCATAgg < 1:2432652/91‑1 (MQ=255) aCGAGGCGACAATAACACTTGGTAATGTGTTGCCTCCTTTAAAAATCGGGAAAAAGTTACCTACTGCTGACATCAATAGTGTTGCATAGGc < 1:1191113/91‑1 (MQ=255) aCGAGGCGACAATAACACTTGGTAATGTGTTGCCTCCTTTAAAAATCGGGAAAAAGTTACCTACTGCTGACATCAATAGTGTTGCATAGGc < 1:3919330/91‑1 (MQ=255) aGGCGACAATAACACTTGGTAATGTGTTGCCTCCTTTAAAAATCGGGAAAAAGTTACCTACTGCTGACATCAATAGTGTTGCCTATGCAAc < 1:1100254/91‑1 (MQ=255) aGGCGACAATAACACTTGGTAATGTGTTGCCTCCTTTAAAAATCGGGAAAAAGTTACCTACTGCTGACATCAATAGTGTTGCATAGGCaat < 2:2238518/91‑2 (MQ=255) aGGCGACAATAACACTTGGTAATGTGTTGCCTCCTTTAAAAATCGGGAAAAAGTTACCTACTGCTGACATCAATAGTGTTGCATAGGCAAc < 1:455618/91‑1 (MQ=255) aGGCGACAATAACACTTGGTAATGTGTTGCCTCCTTTAAAAATCGGGAAAAAGTTACCTACTGCTGACATCAATAATGTTGCCTATGCAAc < 2:2385848/91‑1 (MQ=38) gCGACAATAACACTTGGTAATGTGTTGCCTCCTTTAAAAATCGGGAAAAAGTTACCTACTGCTGACATCAATAGTGTTGCATAGGCAACAt < 1:2066642/91‑1 (MQ=255) gACAATAACACTTGGTAATGTGTTGCCTCCTTTAAAAATCGGGAAAAAGTTACCTACTGCTGACATCAATAGTGTTGCATAGGCAACATTg > 1:3377256/1‑91 (MQ=255) aCAATAACACTTGGTAATGTGTTGCCTCCTTTAAAAATCGGGAAAAAGTTACCTACTGCTGACATCAATAGTGTTGCATAGGCAACATTGc < 1:457680/91‑1 (MQ=255) cAATAACACTTGGTAATGTGTTGCCTCCTTTAAAAATCGGGAAAAAGTTACCTACTGCTGACATCAATAGTGTTGCATAGGCAACATTGcc < 1:482269/91‑1 (MQ=255) aaTAACACTTGGTAATGTGTTGCCTCCTTTAAAAATCGGGAAAAAGTTACCTACTGCTGACATCAATAGTGTTGCATAGGCAACATTGCCt > 1:3073094/1‑91 (MQ=255) aaTAACACTTGGTAATGTGTTGCCTCCTTTAAAAATCGGGAAAAAGTTACCTACTGCTGACATCAATAGTGTTGCATAGGCAACATTGCCt < 1:2473558/91‑1 (MQ=255) aTAACACTTGGTAATGTGTTGCCTCCTTTAAAAATCGGGAAAAAGTTACCTACTGCTGACATCAATAGTGTTGCATAGGCAACATTGCCTa > 1:1993686/1‑91 (MQ=255) cacTTGGTAATGTGTTGCCTCCTTTAAAAATCGGGAAAAAGTTACCTACTGCTGACATCAATAGTGTTGCATAGGCAACATTGCCTaaaaa < 1:1614189/91‑1 (MQ=255) acTTGGTAATGTGTTGCCTCCTTTAAAAATCGGGAAAAAGTTACCTACTGCTGACATCAATAGTGTTGCATAGGCAACATTGCCTAAAAAc < 1:3480025/91‑1 (MQ=255) acTTGGTAATGTGTTGCCTCCTTTAAAAATCGGGAAAAAGTTACCTACTGCTGACATCAATAGTGTTGCATAGGCAACATTGCCTAAAAAc > 1:1013382/1‑91 (MQ=255) acTTGGTAATGTGTTGCCTCCTTTAAAAATCGGGAAAAAGTTACCTACTGCTGACATCAATAGTGTTGCATAGGCAACATTGCCTAAAAAc < 2:2681567/91‑1 (MQ=255) acTTGGTAATGTGTTGCCTCCTTTAAAAATCGGGAAAAAGTTACCTACTGCTGACATCAATAGTGTTGCATAGGCAACATTGCCTAAAAAc > 1:1766732/1‑91 (MQ=255) ttGGTAATGTGTTGCCTCCTTTAAAAATCGGGAAAAAGTTACCTACTGCTGACATCAATAGTGTTGCATAGGCAACATTGCCTAAAAACGc < 1:3314197/91‑1 (MQ=255) tGGTAATGTGTTGCCTCCTTTAAAAATCGGGAAAAAGTTACCTACTGCTGACATCAATAGTGTTGCATAGGCAACATTGCCTAAAAACGCt > 1:2577291/1‑91 (MQ=255) tGGTAATGTGTTGCCTCCTTTAAAAATCGGGAAAAAGTTACCTACTGCTGACATCAATAGTGTTGCATAGGCAACATTGCCTAAAAACGCt < 1:2529575/91‑1 (MQ=255) tGGTAATGTGTTGCCTCCTTTAAAAATCGGGAAAAAGTTACCTACTGCTGACATCAATAGTGTTGCATAGGCAACATTGCCTAAAAACGCt < 1:1380069/91‑1 (MQ=255) ggTAATGTGTTGCCTCCTTTAAAAATCGGGAAAAAGTTACCTACTGCTGACATCAATAGTGTTGCATAGGCAACATTGCCTAAAAACGCTg > 1:3740889/1‑91 (MQ=255) gTAATGTGTTGCCTCCTTTAAAAATCGGGAAAAAGTTACCTACTGCTGACATCAATAGTGTTGCATAGGCAACATTGCCTAAAAACGCTga > 1:941388/1‑91 (MQ=255) aTGTGTTGCCTCCTTTAAAAATCGGGAAAAAGTTACCTACTGCTGACATCAATAGTGTTGCATAGGCAACATTGCCTAAAAACGCTGAGaa > 1:1471745/1‑91 (MQ=255) aTGTGTTGCCTCCTTTAAAAATCGGGAAAAAGTTACCTACTGCTGACATCAATAGTGTTGCATAGGCAACATTGCCTAAAAACGCTGAGaa < 1:3198917/91‑1 (MQ=255) tgtgTTGCCTCCTTTAAAAATCGGGAAAACGTTACCTACTGCTGACATCAATAGTGTTGCATAGGCAACATTGCCTAAAAACGCTGAGAAc > 2:3448993/1‑91 (MQ=255) tgtgTTGCCTCCTTTAAAAATCGGGAAAAAGTTACCTACTGCTGACATCAATAGTGTTGCATAGGCACCATTGCCTAAAAACGCTGAGAAc > 1:1306918/1‑91 (MQ=255) tgtgTTGCCTCCTTTAAAAATCGGGAAAAAGTTACCTACTGCTGACATCAATAGTGTTGCATAGGCAACATTGCCTAAAAACGCTGAGAAc > 2:2261538/1‑91 (MQ=255) tgtgTTGCCTCCTTTAAAAATCGGGAAAAAGTTACCTACTGCTGACATCAATAGTGTTGCATAGGCAACATTGCCTAAAAACGCTGAGAAc > 2:3791126/1‑91 (MQ=255) gtgtTGCCTCCTTTAAAAATCGGGAAAAAGTTACCTACTGCTGACATCAATAGTGTTGCATAGGCAACATTGCCTAAAAACGCTGAGAAcc < 1:254796/91‑1 (MQ=255) tGCCTCCTTTAAAAATCGGGAAAAAGTTACCTACTGCTGACATCAATAGTGTTGCATAGGCAACATTGCCTAAAAACGCTGAGAACCAata > 1:263715/1‑91 (MQ=255) gCCTCCTTTAAAAATCGGGAAAAAGTTACCTACTGCTGACATCAATAGTGTTGCATAGGCAACATTGCCTAAAAACGCTGAGAACCAatag > 2:3911272/1‑90 (MQ=255) cctcctTTAAAAATCGGGAAAAAGTTACCTACTGCTGACATCAATAGTGTTGCATAGGCAACATTGCCTAAAAACGCTGAGAACCAATATc > 1:1683861/1‑91 (MQ=255) ctcctTTAAAAATCGGGAAAAAGTTACCTACTGCTGACATCAATAGTGTTGCATAGGCAACATTGCCTAAAAACGCTGAGAACCAATATcc < 1:567571/91‑1 (MQ=255) tcctTTAAAAATCGGGAAAAAGTTACCTACTGCTGACATCAATAGTGTTGCATAGGCAACATTGCCTAAAAACGCTGAGAACCAATATccc < 2:692863/91‑1 (MQ=255) cctTTAAAAATCGGGAAAAAGTTACCTACTGCTGACATCAATAGTGTTGCATAGGCAACATTGCCTAAAAACGCTGAGAACCAATATcccc < 2:184820/91‑1 (MQ=255) tttAAAAATCGGGAAAAAGTTACCTACTGCTGACATCAATAGTGTTGCATAGGCAACATTGCCTAAAAACGCTGAGAACCAATATCCCCaa > 1:1825357/1‑91 (MQ=255) tttAAAAATCGGGAAAAAGTTACCTACTGCTGACATCAATAGTGTTGCATAGGCAACATTGCCTAAAAACGCTGAGAACCAATATCCCCaa > 1:1707149/1‑91 (MQ=255) ttAAAAATCGGGAAAAAGTTACCTACTGCTGACATCAATAGTGTTGCATAGGCAACATTGCCTAAAAACGCTGAGAACCAATATCCCCAAg > 2:1550686/1‑91 (MQ=255) ttAAAAATCGGGAAAAAGTTACCTACTGCTGACATCAATAGTGTTGCATAGGCAACATTGCCTAAAAACGCTGAGAACCAATATCCCCAAg < 1:3050090/91‑1 (MQ=255) aaaaTCGGGAAAAAGTTACCTACTGCTGACATCAATAGTGTTGCATAGGCAACATTGCCTAAAAACGCTGAGAACCAATATCCCCAAGCAc < 1:753077/91‑1 (MQ=255) aaaTCGGGAAAAAGTTACCTACTGCTGACATCAATAGTGTTGCATAGGCAACATTGCCTAAAAACGCTGAGAACCAATATCCCCAAGCACt > 2:2825351/1‑91 (MQ=255) aaaTCGGGAAAAAGTTACCTACTGCTGACATCAATAGTGTTGCATAGGCAACATTGCCTAAAAACGCTGAGAACCAATATCCCCAAGCACt > 1:2782234/1‑91 (MQ=255) aaaTCGGGAAAAAGTTACCTACTGCTGACATCAATAGTGTTGCATAGGCAACATTGCCTAAAAACGCTGAGAACCAATATCCCCAAGCACt > 2:1682647/1‑91 (MQ=255) aaTCGGGAAAAAGTTACCTACTGCTGACATCAATAGTGTTGCATAGGCAACATTGCCTAAAAACGCTGAGAACCAATATCCCCAAGCACTg < 2:1060050/91‑1 (MQ=255) aaTCGGGAAAAAGTTACCTACTGCTGACATCAATAGTGTTGCATAGGCAACATTGCCTAAAAACGCTGAGAACCAATATCCCCAAGCACTg > 2:1727979/1‑91 (MQ=255) aTCGGGAAAAAGTTACCTACTGCTGACATCAATAGTGTTGCATAGGCAACATTGCCTAAAAACGCTGAGAACCAATATCCCCAAGCACTGa < 1:1803819/91‑1 (MQ=255) aTCGGGAAAAAGTTACCTACTGCTGACATCAATAGTGTTGCATAGGCAACATTGCCTAAAAACGCTGAGAACCAATATCCCCAAGCACTGa < 1:3414593/91‑1 (MQ=255) aTCGGGAAAAAGTTACCTACTGCTGACATCAATAGTGTTGCATAGGCAACATTGCCTAAAAACGCTGAGAACCAATATCCCCAAGCACTGa < 1:1039074/91‑1 (MQ=255) tCGGGAAAAAGTTACCTACTGCTGACATCAATAGTGTTGCATAGGCAACATTGCCTAAAAACGCTGAGAACCAATATCCCCAAGCACTGAt > 1:691288/1‑91 (MQ=255) cGGGAAAAAGTTACCTACTGCTGACATCAATAGTGTTGCATAGGCAACATTGCCTAAAAACGCTGAGAACCAATATCCCCAAGCACTGATa > 1:290829/1‑91 (MQ=255) gggAAAAAGTTACCTACTGCTGACATCAATAGTGTTGCATAGGCAACATTGCCTAAAAACGCTGAGAACCAATATCCCCAAGCACTGATaa < 1:2714906/91‑1 (MQ=255) aaaaGTTACCTACTGCTGACATCAATAGTGTTGCATAGGCAACATTGCCTAAAAACGCTGAGAACCAATATCCCCAAGCACTGATAAATcc > 2:2000803/1‑91 (MQ=255) aaaaGTTACCTACTGCTGACATCAATAGTGTTGCATAGGCAACATTGCCTAAAAACGCTGAGAACCAATATCCCCAAGCACTGATAAATcc > 1:626627/1‑91 (MQ=255) aaaaGTTACCTACTGCTGACATCAATAGTGTTGCATAGGCAACATTGCCTAAAAACGCTGAGAACCAATATCCCCAAGCACTGATAAATcc < 2:651654/91‑1 (MQ=255) aaaGTTACCTACTGCTGACATCAATAGTGTTGCATAGGCAACATTGCCTAAAAACGCTGAGAACCAATATCCCCAAGCACTGATAAATCCt < 2:885653/91‑1 (MQ=255) aGTTACCTACTGCTGACATCAATAGTGTTGCATAGGCAACATTGCCTAAAAACGCTGAGAACCAATATCCCCAAGCACTGATAAATCCTAc < 2:2045709/91‑1 (MQ=255) aCCTACTGCTGACATCAATAGTGTTGCATAGGCAACATTGCCTAAAAACGCTGAGAACCAATATCCCCAAGCACTGATAAATCCTACaaaa > 2:969336/1‑91 (MQ=255) ccTACTGCTGACATCAATAGTGTTGCATAGGCAACATTGCCTAAAAACGCTGAGAACCAATATCCCCAAGCACTGATAAATCCTACAAAAt > 2:3183246/1‑91 (MQ=255) ccTACTGCTGACATCAATAGTGTTGCATAGGCAACATTGCCTAAAAACGCTGAGAACCAATATCCCCAAGCACTGATAAATCCTACAAAAt > 2:2287160/1‑91 (MQ=255) cTACTGCTGACATCAATAGTGTTGCATAGGCAACATTGCCTAAAAACGCTGAGAACCAACATCCCCAAGCACTGATAAATCCCACACAATc > 2:39312/1‑91 (MQ=255) tACTGCTGACATCAATAGTGTTGCATAGGCAACATTGCCTAAAAACGCTGAGAACCAATATCCCCACGCACTGATAAATCCTACACAATcc > 2:1498165/1‑90 (MQ=255) tACTGCTGACATCAATAGTGTTGCATAGGCAACATTGCCTAAAAACGCTGAGAACCAATATCCCCAAGCACTGATAAATCCTACAAAATCg < 1:2931269/91‑1 (MQ=255) aCTGCTGACATCAATAGTGTTGCATAGGCAACATTGCCTAAAAACGCTGAGAACCAATATCCCCAAGCACTGATAAATCCTACAAAATCGc > 2:440876/1‑91 (MQ=255) gctgACATCAATAGTGTTGCATAGGCAACATTGCCTAAAAACGCTGAGAACCAATATCCCCAAGCACTGATAAATCCTACAAAATCGCCaa < 2:2732625/91‑1 (MQ=255) gctgACAACAATAGTGTTGCATAGGCAACATTGCCTAAAAACGCTGAGAACCAATATCCCCAAGCACTGATAAATCCTACAAAATCGCCaa < 2:1251676/91‑1 (MQ=255) ctgACATCAATAGTGTTGCATAGGCAACATTGCCTAAAAACGCTGAGAACCAATATCCCCAAGCACTGATAAATCCTACAAAATCGCCaaa > 1:2169046/1‑91 (MQ=255) tgACATCAATAGTGTTGCATAGGCAACATTGCCTAAAAACGCTGAGAACCAATATCCCCAAGCACTGATAAATCCTACAAAATCGCCAAAt < 2:1436476/91‑1 (MQ=255) tgACATCAATAGTGTTGCATAGGCAACATTGCCTAAAAACGCTGAGAACCAATATCCCCAAGCACTGATAAATCCTACAAAATCGCCAAAt < 2:3559732/91‑1 (MQ=255) gACATCAATAGTGTTGCATAGGCAACATTGCCTAAAAACGCTGAGAACCAATATCCCCAAGCACTGATAAATCCTACAAAATCGCCAAATc < 1:710178/91‑1 (MQ=255) aCATCAATAGTGTTGCATAGGCAACATTGCCTAAAAACGCTGAGAACCAATATCCCCAAGCACTGATAAATCCTACAAAATCGCCAAATcc < 2:3663510/91‑1 (MQ=255) aCATCAATAGTGTTGCATAGGCAACATTGCCTAAAAACGCTGAGAACCAATATCCCCAAGCACTGATAAATCCTACAAAATCGCCAAATcc > 1:160856/1‑91 (MQ=255) aTCAATAGTGTTGCATAGGCAACATTGCCTAAAAACGCTGAGAACCAATATCCCCAAGCACTGATAAATCCTACAAAATCGCCAAATCCTg < 2:335618/91‑1 (MQ=255) aTCAATAGTGTTGCATAGGCAACATTGCCTAAAAACGCTGAGAACCAATATCCCCAAGCACTGATAAATCCTACAAAATCGCCAAATCCTg > 1:3276485/1‑91 (MQ=255) aTCAATAGTGTTGCATAGGCAACATTGCCTAAAAACGCTGAGAACCAATATCCCCAAGCACTGATAAATCCTACAAAATCGCCAAATCCTg > 1:1303582/1‑91 (MQ=255) aTCAATAGTGTTGCATAGGCAACATTGCCTAAAAACGCTGAGAACCAATATCCCCAAGCACTGATAAATCCTACAAAATCGCCAAATCCTg < 1:3836072/91‑1 (MQ=255) aTCAATAGTGTTGCATAGGCAACATTGCCTAAAAACGCTGAGAACCAATATCCCCAAGCACTGATAAATCCTACAAAATCGCCAAATCCTg > 1:3751740/1‑91 (MQ=255) cAATAGTGTTGCATAGGCAACAATACATAAAAACGCTGAGAACCAATATCCCCAAGCACTGATAAATCCTACAAAATCGCCAAATCCTGCt < 2:420341/91‑1 (MQ=255) aTAGTGTTGCATAGGCAACATTGCCTAAAAACGCTGAGAACCAATATCCCCAAGCACTGATAAATCCTACAAAATCGCCAAATCCTGCTTg > 1:142977/1‑91 (MQ=255) aTAGTGTTGCATAGGCAACATTGCCTAAAAACGCTGAGAACCAATATCCCCAAGCACTGATAAATCCTACAAAATCGCCAAATCCTGCTTg > 2:2034112/1‑91 (MQ=255) gtgtTGCATAGGCAACATTGCCTAAAAACGCTGAGAACCAATATCCCCAAGCACTGATAAATCCTACAAAATCGCCAAATCCTGCTCGAGc > 2:546055/1‑91 (MQ=255) atgtTGCCTATGCAACATTGCCTAAAAACGCTGAGAACCAATATCCCCAAGCACTGATAAATCCTACAAAATCGCCAAATCCTGCTTGAGc > 1:3783525/2‑91 (MQ=255) atgtTGCCTATGCAACATTGCCTAAAAACGCTGAGAACCAATATCCCCAAGCACTGATAAATCCTACAAAATCGCCAAATCCTGCTTGAGc > 1:100432/2‑91 (MQ=255) tGCATAGGCAACATTGCCTACAAACGCTGAGAACCAATATCCCCAAGCACTGATAAATCCTACAAAATCGCCAAATCCTGCTTGAGCATaa > 2:369764/1‑91 (MQ=255) tGCATAGGCAACATTGCCTAAAAACGCTGAGAACCAATATCCCCAAGCACTGATAAATCCTACAAAATCGCCAAATCCTGCTTGAGCATaa > 2:2366632/1‑91 (MQ=255) aTAGGCAACATTGCCTAAAAACGCTGAGAACCAATATCCCCAAGCACTGATAAATCCTACAAAATCGCCAAATCCTGCTTGAGCATAACta < 1:2099481/91‑1 (MQ=255) | AGTAACGAGGCGACAATAACACTTGGTAATGTGTTGCCTCCTTTAAAAATCGGGAAAAAGTTACCTACTGCTGACATCAATAGTGTTGCATAGGCAACATTGCCTAAAAACGCTGAGAACCAATATCCCCAAGCACTGATAAATCCTACAAAATCGCCAAATCCTGCTTGAGCATAACTA > USA300TCH1516_ALE/2780320‑2780499 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |