| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 419,965 | A→T | 7.1% | intergenic (+183/+83) | rpsR → / ← USA300HOU_RS01950 | 30S ribosomal protein S18/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 419,965 | 0 | A | T | 7.1% | 695.4 / 29.2 | 211 | intergenic (+183/+83) | rpsR/USA300HOU_RS01950 | 30S ribosomal protein S18/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (110/85); new base T (14/2); total (124/87) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.66e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 233 total aligned reads displayed.
GTTTTGTGTTCGGAATTTGCACAAAGATATGTTTATATTGCAAAAATAATATGAATTTAGATGCATAAAAAAAGAA‑‑‑CTACGCATTTTAAATAAAATGCATAGCTCTTCTTTTTCTTGCATACGAATTAAAATAACTCGCGAGACCTATAAGTCTCTTTCCTCACTAGATAGTTTATACTT > USA300TCH1516_ALE/419876‑420055 | gTTTTGTGTTCGGAATTTGCACAAAGATATGTTTATATTGCAAAAATAATATGAATTTAGATGCATAAAAAAAGAA‑‑‑CTACGCATTTtaaat < 1:3749567/91‑1 (MQ=255) ttGTGTTCGGAATTTGCACAAAGATATGTTTATATTGCAAAAATAATATGAATTTAGATGCATAAAAAAAGAA‑‑‑CTACGCATTTtaaataaa > 1:2904354/1‑91 (MQ=255) gtgtTCGGAATTTGCACAAAGATATGTTTATATTGCAAAAATAATATGAATTTAGATGCATAAAAAAAGAA‑‑‑CTACGCATTTTAAATAGAAt > 1:3061164/1‑91 (MQ=255) gtgtTCGGAATTTGCACAAAGATATGTTTATATTGCAAAAATAATATGAATTTAGATGCATAAAAAAAGAA‑‑‑CTACGCATTTTAAATAAAAt > 1:790825/1‑91 (MQ=255) tgtTCGGAATTTGCACAAAGATATGTTTATATTGCAAAAATAATATGAATTTAGATGCATAAAAAAAGAA‑‑‑CTACGCATTTTAAATAAAATg > 1:181044/1‑91 (MQ=255) tgtTCGGAATTTGCACAAAGATATGTTTATATTGCAAAAATAATATGAATTTAGATGCATAAAAAAAGAA‑‑‑CTACGCATTTTAAATAAAATg > 1:2405310/1‑91 (MQ=255) gtTCGGAATTTGCACAAAGATATGTTTATATTGCAAAAATAATATGAATTTAGATGCATAAAAAAAGAA‑‑‑CTACGCATTTTAAATAAAATGc < 1:332599/91‑1 (MQ=255) ttCGGAATTTGCACAAAGATATGTTTATATTGCAAAAATAATATGAATTTAGATGCATAAAAAAAGAA‑‑‑CTACGCATTTTAAATAAAATGCa < 1:1796057/91‑1 (MQ=255) cGGAATTTGCACAAAGATATGTTTATATTGCAAAAATAATATGAATTTAGATGCATAAAAAAAGAA‑‑‑CTACGCATTTTAAATAAAATGCATa > 1:292013/1‑91 (MQ=255) aaTTTGCACAAAGATATGTTTATATTGCAAAAATAATATGAATTTAGATGCATAAAAAAAGAA‑‑‑CTACGCATTTTAAATAAAATGCATAGct < 2:3278753/91‑1 (MQ=255) aaTTTGCACAAAGATATGTTTATATTGCAAAAATAATATGAATTTAGATGCATAAAAAAAGAA‑‑‑CTACGCATTTTAAATAAAATGCATAGct > 2:1027476/1‑91 (MQ=255) aTTTGCACAAAGATATGTTTATATTGCAAAAATAATATGAATTTAGATGCATAAAAAAAGAA‑‑‑CTACGCATTTTAAATAAAATGCATAGctc > 2:3725215/1‑91 (MQ=255) aTTTGCACAAAGATATGTTTATATTGCAAAAATAATATGAATTTAGATGCATAAAAAAAGAA‑‑‑CTACGCATTTTAAATAAAATGCATAGctc < 1:2050880/91‑1 (MQ=255) tttGCACAAAGATATGTTTATATTGCAAAAATAATATGAATTTAGATGCATAAAAAAAGAA‑‑‑CTACGCATTTTAAATAAAATGCATAGctct < 1:3633276/91‑1 (MQ=255) tttGCACAAAGATATGTTTATATTGCAAAAATAATATGAATTTAGATGCATAAAAAAAGAA‑‑‑CTACGCATTTTAAATAAAATGCATAGctct < 2:2965783/91‑1 (MQ=255) ttGCACAAAGATATGTTTATATTGCAAAAATAATATGAATTTAGATGCATAAAAAAAGAA‑‑‑CTACGCATTTTAAATAAAATGCATAGCtctt < 2:3855291/91‑1 (MQ=255) tGCACAAAGATATGTTTATATTGCAAAAATAATATGAATTTAGATGCATAAAAAAAGAT‑‑‑CTACGCATTTTACATAAAATGCATAGCtcttc < 2:165628/91‑1 (MQ=255) tGCACAAAGATATGTTTATATTGCAAAAATAATATGAATTTAGATGCATAAAAAAAGAA‑‑‑CTACGCATTTTAAATAAAATGCATAGCtcttc < 1:2181529/91‑1 (MQ=255) tGCACAAAGATATGTTTATATTGCAAAAATAATATGAATTTAGATGCATAAAAAAAGAA‑‑‑CTACGCATTTTAAATAAAATGCATAGCtcttc > 2:816457/1‑91 (MQ=255) tGCACAAAGATATGTTTATATTGCAAAAATAATATGAATTTAGATGCATAAAAAAAGAA‑‑‑CTACGCATTTTAAATAAAATGCATAGCtcttc < 2:1756169/91‑1 (MQ=255) gCACAAAGATATGTTTATATTGCAAAAATAATATGAATTTAGATGCATAAAAAAAGAA‑‑‑CTACGCATTTTAAATAAAATGCATAGCtcttct > 1:3816375/1‑91 (MQ=255) caAAGATATGTTTATATTGCAAAAATAATATGAATTTAGATGCATAAAAAAAGAA‑‑‑CTACGCATTTTAAATAAAATGCATAGCTCTTCtttt > 2:827392/1‑91 (MQ=255) aaaaGATATGTATATATAGAAAAAATAATATGAATTTAGATGCATAAAAAAAGAA‑‑‑CTACGCATTTTAAATAAAATGCATAGCTCTTCtttt < 2:3633960/90‑1 (MQ=255) aaGATATGTTTATATTGCAAAAATAATATGAATTTAGATGCATAAAAAAAGAG‑‑‑CTACGCAGTTTAAATAAAATGCATAGCTCTTCTTTTTc < 2:1426013/91‑1 (MQ=255) aaGATATGTTTATATTGCAAAAATAATATGAATTTAGATGCATAAAAAAAGAAGAGCTATGCATTTTATTTAAAATGCGTAGTTCtttttt < 1:2486327/91‑1 (MQ=9) aaGATATGTTTATATTGCAAAAATAATATGAATTTAGATGCATAAAAAAAGAA‑‑‑CTACGCATTTTAAATAAAATGCATAGCTCTTCTTTTTc > 1:3850476/1‑91 (MQ=255) aGATATGTTTATATTGCAAAAATAATATGAATTGAGATGCATAAAAAAAGAA‑‑‑CTACGCATTTTAAATAAAATGCATAGCTCTTCTTTTTCt < 2:2464044/91‑1 (MQ=255) tatGTTTATATTGCAAAAATAATATGAATTTAGATGCATAAAAAAAGAA‑‑‑CTACGCATTTTAAATAAAATGCATAGCTCTTCTTTTTCTTGc > 1:872520/1‑91 (MQ=255) tGTTTATATTGCAAACCTAATATGAATTTAGATGCATCAAAAAAGAA‑‑‑CTACGCATTTTAAATAAAATGCATAGCTCTTCATTTTCTTGCac > 2:2579798/1‑90 (MQ=255) tGTTTATATTGCAAAAATAATATGAATTTAGATGCATCAAAAAAGAA‑‑‑CTACGCATTTTAAATAAAATGCATAGCTCTTCTTTTTCTTGCAt > 1:3344687/1‑91 (MQ=255) tttATATTGCAAAAATAATATGAATTTAGATGCATAAAAAAAGAA‑‑‑CTACGCATTTTAAATAAAATGCATAGCTCTTCTTTTTCTTGCATAc > 2:1202217/1‑91 (MQ=255) tttATATTGCAAAAATAATATGAATTTAGATGCATAAAAAAAGAA‑‑‑CTACGCATTTTAAATAAAATGCATAGCTCTTCTTTTTCTTGCATAc < 1:3128305/91‑1 (MQ=255) tttATATTGCAAAAATAATATGAATTTAGATGCATAAAAAAAGAA‑‑‑CTACGCATTTTAAATAAAATGCATAGCTCTTCTTTTTCTTGCATAc > 1:414949/1‑91 (MQ=255) ttATATTGCAAAAATAATATGGATTTAGATGCATAAAAAAAGAA‑‑‑CTACGCATGTTAATTAAAATGCATAGCTCTTCTTTTTCTTGCATACg < 1:3304664/91‑1 (MQ=255) ttATATTGCAAAAATAATATGAATTTAGATGCATAAAAAAAGAA‑‑‑CTACGCATTTTAAATAAAATGCATAGCTCTTCTTTTTCTTGCATACg > 1:2459104/1‑91 (MQ=255) tataTTGCAAAAATAATATGAATTTAGATGCATAAAAAAAGAA‑‑‑CTACGCACTTTAAATAAAATGCCTAGCTCTTCTTTTTCCTGCATACGa > 2:772883/1‑91 (MQ=255) tGCAAAAATAATATGAATTTAGATGCAT‑AAAAAAGAA‑‑‑CTACGCATTTTAAATAAAATGCATAGCTCTTCTTTTTCTTGCATACGAATTaaa < 1:528888/91‑1 (MQ=255) cAAAAATAATATGAATTTAGATGCATAAAAAAAGAA‑‑‑CTGCGCATTTTAAATAAAATGCATAGCTCTTCTTTTTCTTGCATACGAATTaaaa < 2:1118904/91‑1 (MQ=255) cAAAAATAATATGAATTTAGATGCATAAAAAAAGAA‑‑‑CTACGCATTTTAAATAAAATGCATAGCTCTTCTTTTTCTTGCATACGAATTaaaa > 1:1996871/1‑91 (MQ=255) aaaaaTAATATGAATTTAGATGCAT‑AAAAAAGAA‑‑‑CTACGCATTTTAAATAAAATGCATAGCTCTTCTTTTTCTTGCATACGAATTAAAATa > 1:2898571/1‑91 (MQ=255) taataTGAATTTAGATGCATAAAAAAAGAA‑‑‑CTACGCATTTTAAATAAAATGCATAGCTCTTCTTTTTCTTGCATACGAATTAAAATAACTc > 2:2364687/1‑91 (MQ=255) taataTGAATTTAGATGCATAAAAAAAGAA‑‑‑CTACGCATTTTAAATAAAATGCATAGCTCTTCTTTTTCTTGCATACGAATTAAAATAACTc > 1:265782/1‑91 (MQ=255) atatGAATTTAGATGCATAAAAAAAGAA‑‑‑CTACGCATTTTAAATAAAATGCATAGCTCTTCTTTTTCTTGCATACGAATTAAAATAAATcgc > 2:2403891/1‑91 (MQ=255) tatGAATTTAGATGCATAAAAAAAGAA‑‑‑CTACGCATTTTAAATAAAATGCATAGCTCTTCTTTTTCTTGCATACGAATTAAAATAACTcgcg > 2:2224091/1‑91 (MQ=255) tatGAATTTAGATGCATAAAAAAAGAA‑‑‑CTACGCATTTTAAATAAAATGCATAGCTCTTCTTTTTCTTGCATACGAATTAAAATAACTcgcg < 2:1471278/91‑1 (MQ=255) tatGAATTTAGATGCATAAAAAAAGAA‑‑‑CTACGCATTTTAAATAAAATGCATAGCTCTTCTTTTTCTTGCATACGAATTAAAATAACTcgcg > 1:142364/1‑91 (MQ=255) tatGAATTTAGATGCATAAAAAAAGAA‑‑‑CTACGCATTTTAAATAAAATGCATAGCTCTTCTTTTTCTTGCATACGAATTAAAATAACTcgcg > 1:826849/1‑91 (MQ=255) atGAATTTAGATGCATAAAAAAAGAA‑‑‑CTACGCATTTTAAATAAAATGCATAGCTCTTCTTTTTCTTGCATACGAATTAAAATAACTCGCga > 1:2239243/1‑91 (MQ=255) atGAATTTAGATGCATAAAAAAAGAA‑‑‑CTACGCATTTTAAATAAAATGCATAGCTCTTCTTTTTCTTGCATACGAATTAAAATAACTCGCga > 2:3357128/1‑91 (MQ=255) atGAATTTAGATGCATAAAAAAAGAA‑‑‑CTACGCATTTTAAATAAAATGCATAGCTCTTCTTTTTCTTGCATACGAATTAAAATAACTCGCga > 1:497085/1‑91 (MQ=255) gAATTTAGATGCATAAAAAAAGAA‑‑‑CTACGCATTTTAAATAAAATGCATAGCTCTTCTTTTTCTTGCATACGAATTAAAATAACTCGCgaga < 2:1943623/91‑1 (MQ=255) gAATTTAGATGCATAAAAAAAGAA‑‑‑CTACGCATTTTAAATAAAATGCATAGCTCTTCTTTTTCTTGCATACGAATTAAAATAACTCGCgaga < 2:678018/91‑1 (MQ=255) gAATTTAGATGCATAAAAAAAGAA‑‑‑CTACGCATTTTAAATAAAATGCATAGCTCTTCTTTTTCTTGCATACGAATTAAAATAACTCGCgaga > 1:2752946/1‑91 (MQ=255) aTTTAGATGCATAACAAAAGAA‑‑‑CGTCGCATTTTAAATAAAATGGATAGCTGTTCCTTTTCTTGCATACGAATTAAAATAACTCTCGAGAcc < 2:3680914/91‑1 (MQ=255) tAGATGCATAAAAAAAGAA‑‑‑CTACGCATTTTAAATAAAATGCATAGCTCTTCTTTTTCTTGCATACGAATTAAAATAACTCGCGAGACCtat < 2:3235963/91‑1 (MQ=255) tAGATGCATAAAAAAAGAA‑‑‑CTACGCATTTTAAATAAAATGCATAGCTCTTCTTTTTCTTGCATACGAATTAAAATAACTCGCGAGACCtat < 1:3176213/91‑1 (MQ=255) aGATGCATAAAAAAAGAA‑‑‑CTACGCATTTTAAATAAAATGCATAGCTCTTCTTTTTCTTGCATACGAATTAAAATAACTCGCGAGACCtata < 2:3103706/91‑1 (MQ=255) ggggCAGAAAAGAAGAA‑‑‑CTTCGCGTTGTAAATAAAATGGATAGCTCTTCTGTTTCTGGCATACGAATGAAAATCACTCGCGAGACCTATaa < 2:120598/88‑1 (MQ=255) gATGCATAAAAAAAGAA‑‑‑CTACGCATTTTAAATAAAATGCATAGCTCTTCTTTTTCTTGCATACGAATTAAAATAACTCGCGAGACCTATaa > 1:1228836/1‑91 (MQ=255) gATGCATAAAAAAAGAA‑‑‑CTACGCATTTTAAATAAAATGCATAGCTCTTCTTTTTCTTGCATACGAATTAAAATAACTCGCGAGACCTATaa < 2:1811272/91‑1 (MQ=255) gATGCATAAAAAAAGAA‑‑‑CTACGCATTTTAAATAAAATGCATAGCTCTTCTTTTTCTTGCATACGAATTAAAATAACTCGCGAGACCTATaa > 1:3116421/1‑91 (MQ=255) gATGCATAAAAAAAGAA‑‑‑CTACGCATGTTAAATAAAATGCATAGCTCTTCTTTTTCTTGCATACGAATTAAAATAACTCGCGAGACCTATaa < 2:3602708/91‑1 (MQ=255) aTGCATAAAAAAAGAA‑‑‑CTACGCATTTTAAATAAAATGCATAGCTCTTCTTTTTCTTGCATACGAATTAAAATAACTCGCGAGACCTATAAg < 2:567830/91‑1 (MQ=255) aTGCATAAAAAAAGAA‑‑‑CTACGCATTTTAAATAAAATGCATAGCTCTTCTTTTTCTTGCATACGAATTAAAATAACTCGCGAGACCTATAAg > 2:2106655/1‑91 (MQ=255) cATAAAAAAAGAA‑‑‑CTACGCATTTTAAATAAAATGCATAGCTCTTCTTTTTCTTGCATACGAAGTAAAATAACTCGCGAGACCTATAAGtct < 2:3171558/91‑1 (MQ=255) aTAAAAAAAGAA‑‑‑CTACGCATTTTAAATAAAATGCATAGCTCTTCTTTTTCTTGCATACGAATTAAAATAACTCGCGAGACCTATAAGtctc < 2:1981586/91‑1 (MQ=255) aaaaaaaGAA‑‑‑CTACGCATTTTAAATAAAATGCATAGCTCTTCTTTTTCTTGCATACGAATTAAAATAACTCGCGAGACCTATAAGTCTCtt < 2:3402191/91‑1 (MQ=255) aaaaaaGAA‑‑‑CTACGCATTTTAAATAAAATGCATAGCTCTTCTTTTTCTTGCATACGAATTAAAATAACTCGCGAGACCTATAAGTCTCttt < 2:3384504/91‑1 (MQ=255) aaaaGAA‑‑‑CTACGCATTTTAAATAAAATGCATAGCTCTTCTTTTTCTTGCATACGAATTAAAATAACTCGCGAGACCTATAAGTCTCTTTcc > 1:1886987/1‑91 (MQ=255) aaaaGAA‑‑‑CTACGCATTTTAAATAAAATGCATAGCTCTTCTTTTTCTTGCATACGAATTAAAATAACTCGCGAGACCTATAAGTCTCTTTcc > 1:2322127/1‑91 (MQ=255) gaaGAG‑‑‑CTATGCATTTTATTTAAAATGCGTAGTTCTTTTTTTTCTTGCATACGAATTAAAATAACTCGCGAGACCTATAAGTCTCTTTCCt > 2:782807/2‑91 (MQ=18) gaaGAG‑‑‑CTATGCATTTTATTTAAAATGCGTAATTCTTTTTTTTCTTGCATACGAATTAAAATAACTCGCGAGACCTATAAGTCTCTTTCCt > 1:3506946/2‑91 (MQ=18) aaaGAA‑‑‑CTACGCATTTTAAATAAAATGCATAGCTCTTCTTTTTCTTGCATACGAATTAAAATAACTCGCGAGACCTATAAGTCTCTTTCCt < 2:3459642/91‑1 (MQ=255) aaGAG‑‑‑CTATGCATTTTATTTAAAATGCGTAGTTCTTTTTTTTCTTGCCTACGAATTAAAATAACTCGCGCGCCCTATACGTCTCTTTCCTc > 2:426631/1‑91 (MQ=12) aaGAG‑‑‑CTATGCATTTTATTTAAAATGCGTAGTTCTTTTTTTTCTTGCATACGAATTAAAATAACTCGCGAGACCTATAAGTCTCTTTCCTc > 1:1706919/1‑91 (MQ=18) aaGAG‑‑‑CTATGCATTTTATTTAAAATGCGTAGTTCTTTTTTTTCTTGCATACGAATTAAAATAACTCGCGAGACCTATAAGTCTCTTTCCTc > 1:2974805/1‑91 (MQ=18) gAA‑‑‑CTACGCATTTTAAATAAAATGCATAGCTCTTCTTTTTCTTGCATACGAATTAAAATAACTCGCGAGACCTATAAGTCTCTTTCCTCAc > 2:1319289/1‑91 (MQ=255) gAA‑‑‑CTACGCATTTTAAATAAAATGCATAGCTCTTCTTTTTCTTGCATACGAATTAAAATAACTCGCGAGACCTATAAGTCTCTTTCCTCAc > 2:2847610/1‑91 (MQ=255) aa‑‑‑CTACGCATTTTAAATAAAATGCATAGCTCTTCTTTTTCTTGCATACGAATTAAAATAACTCGCGAGACCTATAAGTCTCTTTCCTCACt > 1:1115756/1‑91 (MQ=255) a‑‑‑CTACGCATTTTAAATAAAATGCATAGCTCTTCTTTTTCTTGCTTACGAATTAAAATAACTCGCGAGACCTATAAGTCTCTTTCCTCACTa > 2:2625755/1‑91 (MQ=255) a‑‑‑CTACGCATTTTAAATAAAATGCATAGCTCTTCTTTTTCTTGCATACGAATTAAAATAACTCGCGAGACCTATACGTCTCTTTCATCACTa > 2:2893014/1‑91 (MQ=255) a‑‑‑CTACGCATTTTAAATAAAATGCATAGCTCTTCTTTTTCTTGCATACGAATTAAAATAACTCGCGAGACCTATAAGTCTCTTTCCTCACTa < 1:1853765/91‑1 (MQ=255) gcTATGCATTTTATTTAAAATGCGTAGTTCTTCTTTTTCTTGCATACGAATTAAAATAACTCGCGAGACCTATAAGTCTCTTTCCTCACTa > 1:666227/2‑91 (MQ=25) cTACGCATTTTAAATAAAATGCATAGCTCTTCTTTTTCTTGCATACGAATTAAAATAACTCGCGAGACCTATAAGTCTCTTTCCTCACTAg > 2:2179828/1‑91 (MQ=255) cTACGCATTTTAAATAAAATGCATAGCTCTTCTTTTTCTTGCATACGAATTAAAATAACTCGCGAGACCTATAAGTCTCTTTCCTCACTAg < 1:1587486/91‑1 (MQ=255) aCGCATTTTAAATAAAATGCATAGCTCTTCTTTTTCTTGCATACGAATTAAAATAACTCGCGAGACCTATAAGTCTCTTTCCTCACTAGAt < 2:2705931/91‑1 (MQ=255) cATTTTAAATAAAATGCATAGCTCTTCTTTTTCTTGCATACGAATTAAAATAACTCGCGAGACCTATAAGTCTCTTTCCTCACTAGATAGt < 2:1498391/91‑1 (MQ=255) cATTTTAAATAAAATGCATAGCTCTTCTTTTTCTTGCATACGAATTAAAATAACTCGCGAGACCTATAAGTCTCTTTCCTCACTAGATAGt < 1:935120/91‑1 (MQ=255) aTTTTATTTAAAATGCGTAGCTCTTCTTTTTCTTGCATACGAATTAAAATAACTCGCGAGACCTATAAGTCTCTTTCCTCACTAGATAGtt > 1:1331601/1‑91 (MQ=255) aTTTTAAATAAAATGCATAGCTCTTCTTTTTCTTGCATACGAATTAAAATAACTCGCGAGACCTATAAGTCTCTTTCCTCACTAGATAGtt < 2:1583339/91‑1 (MQ=255) ttAAATAAAATGCATAGCTCTTCTTTTTCTTGCATACGAATTAAAATAACTCGCGAGACCTATAAGTCTCTTTCCTCACTAGATAGTTtat < 2:1326318/91‑1 (MQ=255) ttAAATAAAATGCATAGCTCTTCTTTTTCTTGCATACGAATTAAAATAACTCGCGAGACCTATAAGTCTCTTTCCTCACTAGATAGTTtat < 1:2023971/91‑1 (MQ=255) taaataaaATGCATAGCTCTTCTTTTTCTTGCATACGAATTAAAATAACTCGCGAGACCTATAAGTCTCTTTCCTCACTAGATAGTTtata > 1:1924548/1‑91 (MQ=255) aaataaaATGCATAGCTCTTCTTTTTCTTGCATACGAATTAAAATAACTCGCGAGACCTATAAGTCTCTTTCCTCACTAGATAGTTTATAc > 1:1050478/1‑91 (MQ=255) aaataaaATGCATAGCTCTTCTTTTTCTTGCATACGAATTAAAATAACTCGCGAGACCTATAAGTCTCTTTCCTCACTAGATAGTTTATAc > 1:1667347/1‑91 (MQ=255) aataaaATGCATAGCTCTTCTTTTTCTTGCATACGAATTAAAATAACTCGCGAGACCTATAAGTCTCTTTCCTCACTAGATAGTTTATACt < 1:2931679/91‑1 (MQ=255) aataaaATGCATAGCTCTTCTTTTTCTTGCATACGAATTAAAATAACTCGCGAGACCTATAAGTCTCTTTCCTCACTAGATAGTTTATACt < 1:3558688/91‑1 (MQ=255) aataaaATGCATAGCTCTTCTTTTTCTTGCATACGAATTAAAATAACTCGCGAGACCTATAAGTCTCTTTCCTCACTAGATAGTTTATACt < 1:1568565/91‑1 (MQ=255) aataaaATGCATAGCTCTTCTTTTTCTTGCATACGAATTAAAATAACTCGCGAGACCTATAAGTCTCTTTCCTCACTAGATAGTTTATACt > 2:1379489/1‑91 (MQ=255) ataaaATGCATAGCTCTTCTTTTTCTTGCATACGAATTAAAATAACTCGCGAGACCTATAAGTCTCTTTCCTCACTAGATAGTTTATACtt > 2:3054908/1‑91 (MQ=255) | GTTTTGTGTTCGGAATTTGCACAAAGATATGTTTATATTGCAAAAATAATATGAATTTAGATGCATAAAAAAAGAA‑‑‑CTACGCATTTTAAATAAAATGCATAGCTCTTCTTTTTCTTGCATACGAATTAAAATAACTCGCGAGACCTATAAGTCTCTTTCCTCACTAGATAGTTTATACTT > USA300TCH1516_ALE/419876‑420055 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |