| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 582,522 | C→G | 7.2% | intergenic (+109/‑72) | nusG_2 → / → rplK | Transcription termination/antitermination protein NusG/50S ribosomal protein L11 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 582,522 | 0 | C | G | 7.2% | 658.8 / 32.3 | 195 | intergenic (+109/‑72) | nusG_2/rplK | Transcription termination/antitermination protein NusG/50S ribosomal protein L11 |
| Reads supporting (aligned to +/- strand): ref base C (77/104); new base G (9/5); total (86/109) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.62e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.61e-01 | |||||||||||
Only 100 of 200 total aligned reads displayed.
AAACTAACCAAAAGATAAAAAAGAGTATTGATTTTTTAATTAGAAAAGTGTTAAAATTATGTGGTCGCGCTTTTAGAGCGCCCATTTCGTCACGAAATGTTAAGAGTGGGAGGGCAAAACTGAGCCCTGTGACCACATCACGATATCAAGGAGGTGCACATCGTGGCTAAAAAAGTAGATA > USA300TCH1516_ALE/582432‑582612 | aaaCTAACCAAAAGATAAAAAAGAGTATTGATTTTTTAATTAGAAAAGTGTTAAAATTATGTGGTCGCGCTTTTAGAGCGCCCATTTCGTc < 1:530481/91‑1 (MQ=255)aaaCTAACCAAAAGATAAAAAAGAGTATTGATTTTTTAATTAGAAAAGTGTTAAAATTATGTGGTCGCGCTTTTAGAGCGCCCATTTCGTc > 1:2129925/1‑91 (MQ=255)aaaCTAACCAAAAGATAAAAAAGAGTATTGATTTTTTAATCAGAAAAGTGTTAAAATTATGTGGTCGCGCTTTTAGAGCGCCCATTTCGTc > 2:3251299/1‑91 (MQ=255) aaCTAACCGAAGGAGAAAAAAGAGGATTGATTTTTTAATTAGAAAAGTGTGAAAATTATGTGGTCGCGCTTTTAGAGCGCCCATTTCGTCa < 1:1022854/91‑1 (MQ=255) aaCTAACCAAAAGATAAAAAAGAGTATTGATTTTTTAATTAGAAAAGTGTTAAAATTATGTGGTCGCGCTTTTAGAGCGCCCATTTCGTCa < 1:3348275/91‑1 (MQ=255) aaCTAACCAAAAGATAAAAAAGAGTATTGATTTTTTAATTAGAAAAGTGTTAAAATTATGTGGTCGCGCTTTTAGAGCGCCCATTTCGTCa < 2:1438688/91‑1 (MQ=255) aaCTAACCAAAAGATAAAAAAGAGTATTGATTTTTTAATTAGAAAAGTGTTAAAATTATGTGGTCGCGCTTTTAGAGCGCCCATTTCGTCa > 1:2271097/1‑91 (MQ=255) aaCTAACCAAAAGATAAAAAAGAGTATTGATTTTTTAATTAGAAAAGTGTTAAAATTATGTGGTCGCGCTTTTAGAGCGCCCATTTCGTCa > 2:1603542/1‑91 (MQ=255) aaCTAACCAAAAGATAAAAAAGAGTATTGATTTTTTAATTAGAAAAGTGTTAAAATTATGTGGTCGCGCTTTTAGAGCGCCCATTTCGTCa < 1:1763261/91‑1 (MQ=255) aaCTAACCAAAAGATAAAAAAGAGTATTGATTTTTTAATTAGAAAAGTGTTAAAATTATGTGGTCGCGCTTTTAGAGCGCCCATTTCGTCa > 1:240484/1‑91 (MQ=255) aCTAACCAAAAGATAAAAAAGAGTATTGATTTTTTAATTAGAAAAGTGTTAAAATTATGTGGTCGCGCTTTTAGAGCGCCCATTTCGTCAc < 1:334541/91‑1 (MQ=255) cTAACCAAAAGATAAAAAAGAGTATTGATTTTTTAATTAGAAAAGTGTTAAAATTATGTGGTCGCGCTTTTAGAGCGCCCATTTCGTGACg < 2:2736846/91‑1 (MQ=255) cTAACCAAAAGATAAAAAAGAGTATTGATTTTTTAATTAGAAAAGTGTTAAAATTATGTGGTCGCGCTTTTAGAGCGCCCATTTCGTCACg > 1:234808/1‑91 (MQ=255) tAACCAAAAGATAAAAAAGAGTATTGATTTTTTAATTAGAAAAGTGTTAAAATTATGTGGTCGCGCTTTTAGAGCGCCCATTTCGTCACGa > 1:895047/1‑91 (MQ=255) aaCCAAAAGATAAAAAAGAGTATTGATTTTTTAATTAGAAAAGTGTTAAAATTATGTGGTCGCGCTTTTAGAGCGCCCATTTCGTGACGaa < 2:1458742/91‑1 (MQ=255) aaCCAAAAGATAAAAAAGAGTATTGATTTTTTAATTAGAAAAGTGTTAAAATTATGTGGTCGCGCTTTTAGAGCGCCCATTTCGTCACGaa < 1:3774424/91‑1 (MQ=255) aCCAAAAGATAAAAAAGAGTATTGATTTTTTAATTAGAAAAGTGTTAAAATTATGTGGTCGCGCTTTTAGAGCGCCCATTTCGTGACGaaa < 2:2688031/91‑1 (MQ=255) ccAAAAGATAAAAAAGAGTATTGATTTTTTAATTAGAAAAGTGTTAAAATTATGTGGTCGCGCTTTTAGAGCGCCCATTTCGTCACGAAAt > 1:172088/1‑91 (MQ=255) aaaGATAAAAAAGAGTATTGATTTTTTAATTAGAAAAGTGTTAAAATTATGTGGTCGCGCTTTTAGAGCGCCCATTTCGTCACGAAATGtt > 1:1653915/1‑91 (MQ=255) aaaGATAAAAAAGAGTATTGATTTTTTAATTAGAAAAGTGTTAAAATTATGTGGTCGCGCTTTTAGAGCGCCCATTTCGTCACGAAATGtt > 1:3880416/1‑91 (MQ=255) aaGATAAAAAAGAGTATTGATTTTTTTTTTTTTTTAGTGTTAAAATTATGTGGTCGCGTTTTTAGAGCGCCCATTTCGTCACGAAATGTTa > 2:2183597/1‑91 (MQ=255) aaGATAAAAAAGAGTATTGATTTTTTAATTAGAAAAGTGTTAAAATTATGTGGTCGCGCTTTTAGAGCGCCCATTTCGTCACGAAATGTTa < 2:1556121/91‑1 (MQ=255) gATAAAAAAGAGTATTGATTTTTTAATTAGAAAAGTGTTAAAATTATGTGGTCGCGCTTTTAGAGCGCCCATTTCGTCACGACATGTTAag > 2:2888156/1‑91 (MQ=255) gATAAAAAAGAGTATTGATTTTTTAATTAGAAAAGTGTTAAAATTATGTGGTCGCGCTTTTAGAGCGCCCATTTCGTCACGAAATGTTAag > 2:2282050/1‑91 (MQ=255) gATAAAAAAGAGTATTGATTTTTTAATTAGAAAAGTGTTAAAATTATGTGGTCGCGCTTTTAGAGCGCCCATTTCGTCACGAAATGTTAag < 1:2612793/91‑1 (MQ=255) aaaaaaaaaGAGTATTGATTTTTTAATTAGAAAAGTGTTAAAATTATGTGGTCGCGCTTTTAGAGCGCCCATTTCGTCACGAAATGTTAag < 2:1642062/88‑1 (MQ=255) aaaaaaGAGTATTGATTTTTTAATTAGAAAAGTGTTAAAATTATGTGGTCGCGCTTTTAGAGCGCCCATTTCGTCACGAAATGTTAAGAGt < 2:174229/91‑1 (MQ=255) aaaaaaGAGTATTGATTTTTTAATTAGAAAAGTGTTAAAATTATGTGGTCGCGCTTTTAGAGCGCCCATTTCGTCACGAAATGTTAAGAGt < 1:2997955/91‑1 (MQ=255) aaaaGAGTATTGATTTTTTAATTAGAAAAGTGTTAAAATTATGTGGTCGCGCTTTTAGAGCGCCCATTTCGTCACGAAATGTTAAGAGTgg < 1:242747/91‑1 (MQ=255) aaaaGAGTATTGATTTTTTAATTAGAAAAGTGTTAAAATTATGTGGTCGCGCTTTTAGAGCGCCCATTTCGTCACGAAATGTTAAGAGTgg > 1:2545622/1‑91 (MQ=255) aaaGAGTATTGATTTTTTAATTAGAAAAGTGTTAAAATTATGTGGTCGCGCTTTTAGAGCGCCCATTTCGTCACGAAATGTTAAGAGTggg > 2:303588/1‑91 (MQ=255) aaGAGTATTGATTTTTTAATTAGAAAAGTGTTATAATTATGTGGTCGCGCTTTTAGAGCGCCCATTTCGTCACGAAATGTTAAGAGTGGGa < 1:3236014/91‑1 (MQ=255) gagTATTGATTTTTTAATTAGAAAAGTGTTAAAATTATGTGGTCGCGCTTTTAGCGCGCCCATTTCGTCACGAAATGTTAAGAGTGGGAgg > 2:3120229/1‑91 (MQ=255) agTATTGATTTTTTAATTAGAAAAGTGTTAAAATTATGTGGTCGCGCTTTTAGAGCGCCCATTTCGTCACGAAATGTTAAGAGTGGGAggg < 1:1349767/91‑1 (MQ=255) agTATTGATTTTTTAATTAGAAAAGTGTTAAAATTATGTGGTCGCGCTTTTAGAGCGCCCATTTCGTCACGAAATGTTAAGAGTGGGAggg < 1:823117/91‑1 (MQ=255) agTATTGATTTTTTAATTAGAAAAGTGTTAAAATTATGTGGTCGCGCTTTTAGAGCGCCCATTTCGTCACGAAATGTTAAGAGTGGGAggg < 1:1348354/91‑1 (MQ=255) gTATTGATTTTTTAATTAGAAAAGTGTTAAAATTATGTGGTCGCGCTTTTAGAGCGCCCATTTCGTCACGAAATGTTAAGAGTGGGAGGGc < 2:3656268/91‑1 (MQ=255) tATTGATTTTTTAATTAGAAAAGTGTTAAAATTATGTGGTCGCGCTTTTAGAGCGCCCATTTCGTCACGAAATGTTAAGAGTGGGAGGGCa < 1:3524052/91‑1 (MQ=255) aTTGATTTTTTAATTATAAAAGTGTTAAAATTATGTGGTCGCGCTTTTAGAGCGCCCATTTCGTCACGAAATGTTAAGAGTGGGAGGGCaa < 2:3034556/91‑1 (MQ=255) ttttttAATTAGAAAAGTGTTAAAATTATGTGGTCGCGCTTTTAGAGCGCCCATTTCGTCACGAAATGTTAAGAGTGGGAGGGCAAAACTg < 2:2065700/91‑1 (MQ=255) tttttAATTAGAAAAGTGTTAAAATTATGTGGTCGCGCTTTTAGAGCGCCCATTTCGTCACGAAATGTTAAGAGTGGGAGGGCAAAACTGa < 2:792329/91‑1 (MQ=255) ttttAATTAGAAAAGTGTTAAAATTATGTGGTCGCGCTTTTAGAGCGCCCATTTCGTCACGAAATGTTAAGAGTGGGAGGGCAAAACTGAg < 1:656826/91‑1 (MQ=255) ttttAATTAGAAAAGTGTTAAAATTATGTGGTCGCGCTTTTAGAGCGCCCATTTCGTCACGAAATGTTAAGAGTGGGAGGGCAAAACTGAg < 1:1789776/91‑1 (MQ=255) ttAAATAGAAAAGTGTTAAAATTATGTGGTCGCGCTTTTAGAGCGACCATTTCGTCACGAAATGTTAAGAGTGGGAGGGCAAAACTGAGcc < 1:2191140/91‑1 (MQ=255) aTTAGAAAAGTGTTAAAATTATGTGGTCGCGCTTTTAGAGCGCCCATTTCGTCACGAAATGTTAAGAGTGGGAGGGCAAAACTGAGCCCtg > 2:781727/1‑91 (MQ=255) aTTAGAAAAGTGTTAAAATTATGTGGTCGCGCTTTTAGAGCGCCCATTTCGTCACGAAATGTTAAGAGTGGGAGGGCAAAACTGAGCCCtg > 1:1432829/1‑91 (MQ=255) ttAGAAAAGTGTTAAAATTATGTGGTCGCGCTTTTAGAGCGCCCATTTCGTCACGCACTGTTAAGCGTGGGAGGGCAAAACTGAGCCCcgt > 2:475181/1‑91 (MQ=255) ttAGAAAAGTGTTAAAATTATGTGGTCGCGCTTTTAGAGCGCCCATTTCGTCACGAAATGTTAAGAGTGGGAGGGCAAAACTGAGCCCtgt > 2:3188835/1‑91 (MQ=255) aaaaGTGTTAAAATTATGTGGTCGCGCTTTTAGAGCGCCCATTTCGTCGCGAAATGTTAAGAGTGGGAGGGCAAAACTGAGCCCTGTGAcc < 2:500106/91‑1 (MQ=255) aaaaGTGTTAAAATTATGTGGTCGCGCTTTTAGAGCGCCCATTTCGTCACGAAATGTTAAGAGTGGGAGGGCAAAACTGAGCCCTGTGAcc < 1:1112368/91‑1 (MQ=255) aaaaGTGTTAAAATTATGTGGTCGCGCTTTTAGAGCGCCCATTTCGTCACGAAATGTTAAGAGTGGGAGGGCAAAACTGAGCCCTGTGAcc < 1:415896/91‑1 (MQ=255) aaaGTGTTAAAATTATGTGGTCGCGCTTTTAGAGCGCCCATTTCGTCACGAAATGTTAAGAGTGGGAGGGCAAAACTGAGCCCTGTGACca < 1:1383391/91‑1 (MQ=255) aaaGTGTTAAAAGTATGTGGTCGCGCTTTTAGAGCGCCCATTTCGTCACGAAATGTTAAGAGTGGGAGGGCAAAACTGAGCCCTGTGACca > 1:3029839/1‑91 (MQ=255) gtgtTAAAATTATGTGGTCGCGCTTTTAGAGCGCCCATTTCGTCACGAAATGTTAAGAGTGGGAGGGCAAAACTGAGCCCTGTGCCCACAt > 2:2925778/1‑91 (MQ=255) tgtTAAAATTATGTGGTCGCGCTTTTAGAGCGCCCATTTCGTCACGAAATGTTAAGAGTGGGAGGGCAAAACTGAGCCCTGTGACCACATc > 1:125286/1‑91 (MQ=255) gtTAAAATTATGTGGTCGCGCTTTTAGAGCGCCCATTTCGTCACGAAATGTTAAGAGTGGGAGGGTAAAACTGAGCCCTGTGACCACATCa > 1:3673139/1‑91 (MQ=255) gtTAAAATTATGTGGTCGCGCTTTTAGAGCGCCCATTTCGTCACGAAATGTTAAGAGTGGGAGGGCAAAACTGAGCCCTGTGACCACATCa < 1:1472408/91‑1 (MQ=255) ttATAATTATGTGGTCGCGCTTTTAGAGCGCCCATTTCGTCACGAAATGTTAAGAGTGGGAGGGCAAAACTGAGCCCTGTGACCACATCAc < 2:2410101/91‑1 (MQ=255) aaTTATGTGGTCGCGCTTTTAGAGCGCCCATTTCGTCACGAAATGTTAAGAGTGGGAGGGCAAAACTGAGCCCTGTGACCACATCACGata < 2:238090/91‑1 (MQ=255) aTTATGTGGTCGCGCTTTTAGAGCGCCCATTTCGTCACGAAATGTTAAGAGTGGGAGGGCAAAACTGAGCCCTGTGACCACATCACGatat < 2:1057794/91‑1 (MQ=255) aTTATGTGGTCGCGCTTTTAGAGCGCCCATTTCGTCACGAAATGTTAAGAGTGGGAGGGCAAAACTGAGCCCTGTGACCACATCACGatat < 1:1689138/91‑1 (MQ=255) ttATGTGGTCGCGCTTTTAGAGCGCCCATTTCGTCACGAAATGTTAAGAGTGGGAGGGCAAAACTGAGCCCTGTGACCACATCACGATATc < 2:1276938/91‑1 (MQ=255) ttATGTGGTCGCGCTTTTAGAGCGCCCATTTCGTCACGAAATGTGAAGAGTGGGAGGGCAAAACTGAGCCCTGTGACCACATCACGATATc < 1:3134424/91‑1 (MQ=255) tgtgGTCGCGCTTTTAGAGCGCCCATTTCGTCACGAAATGTTAAGAGTGGGAGGGCAAAACTGAGCCCTGTGACCACATCACGATATCAag < 2:2471588/91‑1 (MQ=255) tgGTCGCGCTTTTAGAGCGCCCATTTCGTCACGAAATGTTAAGAGTGGGAGGGCAAAACTGAGCCCTGTGACCACATCACGATATCAagga < 2:2529922/91‑1 (MQ=255) tgGTCGCGCTTTTAGAGCGCCCATTTCGTCACGAAATGTTAAGAGTGGGAGGGCAAAACTGAGCCCTGTGACCACATCACGATATCAagga > 2:3803122/1‑91 (MQ=255) tgGTCGCGCTTTTAGAGCGCCCATTTCGTCACGAAATGTTAAGAGTGGGAGGGCAAAACTGAGCCCTGTGACCACATCACGATATCAagga > 1:186637/1‑91 (MQ=255) tgGTCGCGCTTTTAGAGCGCCCATTTCGTCACGAAATGTTAAGAGTGGGAGGGCAAAACTGAGCCCTGTGACCACATCACGATATCAagga > 1:2283106/1‑91 (MQ=255) ggTCGCGCTTACCGAGCGCCCATTTCGGCACGTAACGTCCAGAGTGGGAGGGCAAAACTGAGCCCTGTGACCACTTCTCGTTATCAaggag > 2:3583669/1‑91 (MQ=255) gcgcTTTTAGAGCGCCCATTTCGTCACGAAATGTTAAGAGTGGGAGGGCAAAACTGAGCCCTGTGACCACATCACGATATCAAGGAGGTGc > 1:2528487/1‑91 (MQ=255) gcgcTTTTAGAGCGCCCATTTCGTCACGAAATGTTAAGAGTGGGAGGGCAAAACTGAGCCCTGTGACCACATCACGATATCAAGGAGGTGc < 2:1092403/91‑1 (MQ=255) cgcTTTTAGAGCGCCCATTTCGTCACGAAATGTTAAGAGTGGGAGGGCAAAACTGAGCCCTGTGACCACATCACGATATCAAGGAGGTGca > 1:2092056/1‑91 (MQ=255) gcTTTTAGAGCGCCCATTTCGTCACGAAATGTTAAGAGTGGGAGGGCAAAACTGAGCCCTGTGACCACATCACGATATCAAGGAGGTGcac < 1:1576142/91‑1 (MQ=255) tttAGAGCGCCCATTTCGTCACGAAATGTTAAGAGTGGGAGGGCAAAACTGAGCCCTGTGACCACATCACGATATCAAGGAGGTGCACATc > 2:3847828/1‑91 (MQ=255) tAGAGCGCCCATTTCGTCACGAAATGTTAAGAGTGGGAGGGCAAAACTGAGCCCTGTGACCACATCACGATATCAAGGAGGTGCACATCGt > 2:2952866/1‑91 (MQ=255) tAGAGCGCCCATTTCGTCACGAAATGTTAAGAGTGGGAGGGCAAAACTGAGCCCTGTGACCACATCACGATATCAAGGAGGTGCACATCGt > 1:1307588/1‑91 (MQ=255) gagCGCCCATTTCGTCACGAAATGTTAAGAGTGGGAGGGCAAAACTGAGCCCTGTGACCACATCACGATATCAAGGAGGCGCACATCGTgg > 1:3497904/1‑91 (MQ=255) gagCGCCCATTTCGTCACGAAAGGTTAAGGGTGGGAGGGCAAAACTGAGCCCTGTGACCACATCACGATATAAGGGAGGTGCACATCGTgg < 2:642883/91‑1 (MQ=255) agCGCCCATTTCGTCACGAAATGTTAAGAGTGGGAGGGCAAAACTGAGCCCTGTGACCACATCACGATATCAAGGAGGTGCACATCGTGGc < 1:401302/91‑1 (MQ=255) gcgcCCATTTCGTCATGAAATGTTACTAGTGGGAGGGCAAAACTGAGCCCTGTGACCACATCACGATATCAAGGAGGTGCACATCGTGGCt < 2:3420375/91‑1 (MQ=255) gcgcCCATTTCGTCACGAAATGTTAAGAGTGGGAGGGCAAAACTGAGCCCTGTGACCACATCACGATATCAAGGAGGTGCACATCGTGGCt < 2:224987/91‑1 (MQ=255) gcgcCCATTTCGTCACGAAATGTTAAGAGTGGGAGGGCAAAACTGAGCCCTGTGACCACATCACGATATCAAGGAGGTGCACATCGTGGCt < 1:2378752/91‑1 (MQ=255) gcgcCCATTTCGTCACGAAATGTTAAGAGTGGGAGGGCAAAACGGAGCCCTGTGACCACATCACGATAGCCAGGAGGTGCACATCGTGGCt < 2:2041295/91‑1 (MQ=255) gcCCATTTCGTCACGAAATGTTAAGAGTGGGAGGGCAAAACTGAGCCCTGTGACCACATCACGATATCAAGGAGGTGCACATCGTGGCTaa > 1:3278431/1‑91 (MQ=255) gcCCATTTCGTCACGAAATGTTAAGAGTGGGAGGGCAAAACTGAGCCCTGTGACCACATCACGATATCAAGGAGGTGCACATCGTGGCTaa < 2:1931376/91‑1 (MQ=255) cccATTTCGTCACGAAATGTTAAGAGTGGGAGGGCAAAACTGAGCCCTGTGACCACATCACGATATCAAGGAGGTGCACATCGTGGCTaaa < 2:1369414/91‑1 (MQ=255) aTTTCGTCACGAAATGTTAAGAGTGGGAGGGCAAAACTGAGCCCTGTGACCACATCACGATATCAAGGAGGTGCACATCGTGGCTaaaaaa > 1:1044813/1‑91 (MQ=255) aTTTCGTCACGAAATGTTAAGAGTGGGAGGGCAAAACTGAGCCCTGTGACCACATCACGATATCAAGGAGGTGCACATCGTGGCTaaaaaa < 1:908106/91‑1 (MQ=255) tttCGTGACGAAATGTTAAGAGTGGGAGGGCAAAACTGAGCCCTGTGACCACATCACGATATCAAGGAGGTGCACATCGTGGCTAAAAAAg > 1:574084/1‑91 (MQ=255) tttCGTCACGAAATGTTAAGAGTGGGAGGGCAAAACTGAGCCCTGTGACCACATCACGATATCAAGGAGGTGCACATCGTGGCTAAAAAAg < 1:2156529/91‑1 (MQ=255) ttCGTGACGAAATGTTAAGAGTGGGAGGGCAAAACTGAGCCCTGTGACCACATCACGATATCAAGGAGGTGCACATCGTGGCTAAAAAAGt > 1:774566/1‑91 (MQ=255) ttCGTCACGAAATGTTAAGAGTGGGAGGGCAAAACTGAGCCCTGTGACCACATCACGCTATCAAGGAGGTGCACATCGTGGCTAAAAAAGt > 1:2705041/1‑91 (MQ=255) ttCGTCACGAAATGTTAAGAGTGGGAGGGCAAAACTGAGCCCTGTGACCACATCACGATATCAAGGAGGTGCACATCGTGGCTAAAAAAGt > 2:103480/1‑91 (MQ=255) ttCGTCACGAAATGTTAAGAGTGGGAGGGCAAAACTGAGCCCTGTGACCACATCACGATATCAAGGAGGTGCACATCGTGGCTAAAAAAGt < 2:1537424/91‑1 (MQ=255) tCGTCACGAAATGTTAAGAGTGGGAGGGCAAAACTGAGCCCTGTGACCACATCACGATATCAAGGAGGTGCACATCGTGGCTAAAAAAGTa < 2:455738/91‑1 (MQ=255) cGTGACGAAATGTTAAGAGTGGGAGGGCAAAACTGAGCCCTGTGACCACATCACGATATCAAGGAGGTGCACATCGTGGCTCAAAAAGTAg > 1:804823/1‑91 (MQ=255) cGTGACGAAATGTTAAGAGTGGGAGGGCAAAACTGAGCCCTGTGACCACATCACGATATCAAGGAGGTGCACATCGTGGCTAAAAAAGTAg > 2:1251771/1‑91 (MQ=255) gTCACGAAATGTTAAGAGTGGGAGGGCAAAACTGAGCCCTGTGACCACATCACGATATCAAGGAGGTGCACATCGTGGCTAAAAAAGTAGa < 1:1311077/91‑1 (MQ=255) tCACGAAATGTTAAGAGTGGGAGGGCAAAACTGAGCCCTGTGACCACATCACGATATCAAGGAGGTGCACATCGTGGCTAAAAAAGTAGAt > 1:1364458/1‑91 (MQ=255) cACGAAATGTTAAGAGTGGGAGGGCAAAACTGAGCCCTGTGACCACATCACGATATCAAGGAGGTGCACATCGTGGCTAAAAAAGTAGATa > 1:1800171/1‑91 (MQ=255) | AAACTAACCAAAAGATAAAAAAGAGTATTGATTTTTTAATTAGAAAAGTGTTAAAATTATGTGGTCGCGCTTTTAGAGCGCCCATTTCGTCACGAAATGTTAAGAGTGGGAGGGCAAAACTGAGCCCTGTGACCACATCACGATATCAAGGAGGTGCACATCGTGGCTAAAAAAGTAGATA > USA300TCH1516_ALE/582432‑582612 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |