| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 583,951 | A→T | 6.4% | intergenic (+35/‑237) | rplA → / → rplJ | 50S ribosomal protein L1/50S ribosomal protein L10 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 583,951 | 0 | A | T | 6.4% | 729.8 / 27.0 | 217 | intergenic (+35/‑237) | rplA/rplJ | 50S ribosomal protein L1/50S ribosomal protein L10 |
| Reads supporting (aligned to +/- strand): ref base A (100/103); new base T (12/2); total (112/105) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.09e-02 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.60e-01 | |||||||||||
Only 100 of 227 total aligned reads displayed.
CTGTAACTACAACAATGGGTCCTGGAGTTAAAATTGATACTGCAAGTTTCAAATAATAAATGATATAAACAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTATATTACTTATTGTGATTATTTTACCTAAGACAGTAGGAGTTAT > USA300TCH1516_ALE/583861‑584041 | gTAACTACAACAATGCGGCCTGGAGTTAAAATTGATACTTCAAGTTTCAAATAATAAATGATATAAACAATTACAGGCTGAAAGAAATATc < 2:1645957/91‑1 (MQ=255) acggcaacaaTGGGTCCTGGAGTTAAAATTGATACTGCAAGGTTCAAATAATAAATGATATAAACAATTACAGGCTGAAAGAAATATCttt < 2:2576813/87‑1 (MQ=255) caacaaTGGGTCCTGGAGTTAAAATTGATACTGCAAGTTTCAAATAATAAATGATATAAACAATTACAGGCTGAAAGAAATATCTTTCAGt > 1:2467442/1‑91 (MQ=255) caacaaTGGGTCCTGGAGTTAAAATTGATACTGCAAGTTTCAAATAATAAATGATATAAACAATTACAGGCTGAAAGAAATATCTTTCAGt > 2:2770020/1‑91 (MQ=255) caacaaTGGGTCCTGGAGTTAAAATTGATACTGCAAGTTTCAAATAATAAATGATATAAACAATTACAGGCTGAAAGAAATATCTTTCAGt < 1:150959/91‑1 (MQ=255) caacaaTGGGCCCTGGAGTTAAAATTGATACTGCAAGTTTCAAATAATAAATGATATAAACAATTACAGGCTGAAAGAAATATCTTTCAGt > 2:3409844/1‑91 (MQ=255) aacaaTGGGTCCTGGAGTTAAAATTGATACTGCAAGTTACAAATAATAAATGATATAAACAATTACAGGCTGAAACAAATATCTTTCAGTc < 2:737465/91‑1 (MQ=255) aacaaTGGGTCCTGGAGTTAAAATTGATACTACAAGTTTCAAATTATAAATGATATAAACAATTACAGGCTGAAAGAAATATCTTTCAGTc < 2:3546826/91‑1 (MQ=255) tGGGTCCTGGAGTTAAAATTGATACTGCAAGTTTCAAATAATAAATGATATAAACAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTaa > 2:1296529/1‑91 (MQ=255) gggTCCTGGAGTTAAAATTGATACTGCAAGTTTCAAATAATAAATGATATAAACAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTaaa > 2:886863/1‑91 (MQ=255) gggTCCTGGAGTTAAAATTGATACTGCAAGTTTCAAATAATAAATGATATAAACAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTaaa > 1:1704131/1‑91 (MQ=255) gggTCCTGGAGTTAAAATTGATACTGCAAGTTTCAAATAATAAATGATATAAACAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTaaa > 1:3020957/1‑91 (MQ=255) ggTCCTGGAGTTAAAATTAATACTGAAAGTTTCAAATAATAAATGATATAAACAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTaaaa < 1:1821451/91‑1 (MQ=255) tCCTGGAGTTAAAATTGATACTGCAAGTTTCAAATAATAAATGATATAAACAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAat < 1:2337823/91‑1 (MQ=255) cTGGAGTTAAAATTGATACTTCAAGTTTCAACTACTAAATGATATAAACAATTACAGGCTGAACGAAATATCTTTCAGTCTGTACAAatat > 2:2944416/1‑91 (MQ=255) cTGGAGTTAAAATTGATACTGCAAGTTTCAAATAATAAATGATATAAACAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAatat < 1:3735302/91‑1 (MQ=255) cTGGAGTTAAAATTGATACTGCAAGTTTCAAATAATAAATGATATAAACAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAatat < 1:732264/91‑1 (MQ=255) tGGAGTTAAAATTGATACTGCAAGTTTCAAATAATAAATGATATAAACAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAatata > 2:926412/1‑91 (MQ=255) ggAGTTATAATTGATACTGCAAGTTTCAAATAATAAATGATATAAACAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAatatat < 2:1999005/91‑1 (MQ=255) ggAGTTAAAATTGATACTGCAAGTTTCAAATAATAAATGATATAAACAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAatatat > 1:3825659/1‑91 (MQ=255) ggAGTTAAAATTGATACTGCAAGTTTCAAATAATAAATGATATAAACAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAatatat < 2:2838341/91‑1 (MQ=255) gAGTTAAAATTGATACTGCAAGTTTCAAATAATAAATGATATAAACAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAATATAtt > 1:513958/1‑91 (MQ=255) aGTTAAAAGTGATACTGCAAGTTTCAAATAATAAATGATATAAACAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTg < 1:1958125/91‑1 (MQ=255) gTTAAAATTGATACTGCAAGTTTCAAATAATAAATGATATAAACAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTGa > 2:3700250/1‑91 (MQ=255) gTTAAAATTGATACTGCAAGTTTCAAATAATAAATGATATAAACAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTGa > 2:3859120/1‑91 (MQ=255) ttAAAATTGATACTGCAAGTTTCAAATAATAAATGATATAAACAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTGAc > 2:2041476/1‑91 (MQ=255) ttAAAATTGATACTGCAAGTTTCAAATAATAAATGATATAAACAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTGAc > 2:2653846/1‑91 (MQ=255) aaTTGATACTGCAAGTTTCAAATAATAAATGATATAAACAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTGACAATa < 1:2724428/91‑1 (MQ=255) aTTGATACTGCAAGTTTCAAATAATAAATGATATAAACAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTGACAATaa > 1:363774/1‑91 (MQ=255) aTTGATACTGCAAGTTTCAAATAATAAATGATATAAACAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTGACAATaa < 2:841490/91‑1 (MQ=255) gATACTGCAAGTTTCAAATAATAAATGATATAAACAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTGACAATAAGTa > 2:709218/1‑91 (MQ=255) aTACTGCAAGTTTCAAATAATAAATGATATAAACAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTGACAATAAGTaa > 2:2154375/1‑91 (MQ=255) aTACTGCAAGTTTCAAATAATAAATGATATAAACAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTGACAATAAGTaa > 1:2205695/1‑91 (MQ=255) aTACTGCAAGTTTCAAATAATAAATGATATAAACAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTGACAATAAGTaa > 1:3538604/1‑91 (MQ=255) aTACTGCAAGTTTCAAATAATAAATGATATAAACAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTGACAATAAGTaa > 1:1624563/1‑91 (MQ=255) aTACTGCAAGTTTCAAATAATAAATGATATAAACAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTGACAATAAGTaa > 1:1345463/1‑91 (MQ=255) cTGCAAGTTTCAAATAATAAATGATATAAACAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTGACAATAAGTAAttt > 2:485855/1‑91 (MQ=255) gCAAGTTTCAAATAATAAATGATATAAACAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTGACAATAAGTAATTTcc > 1:2699787/1‑91 (MQ=255) gCAAGTTTCAAATAATAAATGATATAAACAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTGACAATAAGTAATTTcc < 1:427057/91‑1 (MQ=255) aaGTTTCAAATAATAAATGATATAAACAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTGACAATAAGTAATTTCCaa < 1:2077732/91‑1 (MQ=255) aGTTTCAAATAATAAATGATATAAACAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTGACAATAAGTAATTTCCAAg < 2:3283190/91‑1 (MQ=255) ggttCAAATAATAAATGATATAATAAATTACAAGCTGAAAGAAATATCTTACAAACTAACAAAATATATTGACAATAAGTAATTTCCAAGt < 2:3026745/89‑1 (MQ=255) ttCAAATAATAAATGATATAAACAATTACAGGCTGAAAGAAATAGCTTTCAGTCTGTAAAAAGATATTGACAATAAGTAATTTCCAAGTta < 2:2294369/91‑1 (MQ=255) cAAATAATAAATGATATAAACAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTtata > 1:3823654/1‑91 (MQ=255) aaaTAATAAATGATATAAACAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTatat > 2:514799/1‑91 (MQ=255) aaaTAATAAATGATATAAACAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTatat > 2:2222021/1‑91 (MQ=255) aaaTAATAAATGATATAAACAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTatat < 1:998032/91‑1 (MQ=255) aaaTAATAAATGATATAAACAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTatat < 1:1088531/91‑1 (MQ=255) aaaTAATAAATGATATAAACAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTatat < 1:852796/91‑1 (MQ=255) aataatAAATGATATAAACAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTATAtt > 1:880036/1‑91 (MQ=255) aataatAAATGATATAAACAATTACAGGCTGAAAGAAATATCTTTCACTCTGTAAAAATATATTGACAATAAGTAATCTCCAAGTTATAtt > 1:3954752/1‑91 (MQ=255) taataaATGATATAAACAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTATATTAc < 1:1288951/91‑1 (MQ=255) taataaATGATATAAACAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTATATTAc < 2:3592904/91‑1 (MQ=255) ataaATGATATAAACAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTATATTACtt > 1:202955/1‑91 (MQ=255) aaaTGATATAAACAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTATATTACTTAt > 2:1495663/1‑91 (MQ=255) aTGATATAAACAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTATATTACTTATtg < 2:1139872/91‑1 (MQ=255) gATATAAACAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTATATTACTTATtgtg < 2:1149989/91‑1 (MQ=255) gATATAAACAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTATATTACTTATtgtg < 2:1548717/91‑1 (MQ=255) tataAACAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTATATTACTTATTGTGat < 2:2606486/91‑1 (MQ=255) tataAACAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTATATTACTTATTGTGat > 2:1581310/1‑91 (MQ=255) ataAACAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTATATTACTTATTGTGatt < 2:1229931/91‑1 (MQ=255) ataAACAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTATATTACTTATTGTGatt > 1:2327596/1‑91 (MQ=255) ataAACAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTATATTACTTATTGTGatt > 2:1694204/1‑91 (MQ=255) taAACAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTATATTACTTATTGTGatta < 1:704274/91‑1 (MQ=255) aaCAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTATATTACTTATTGTGattatt > 1:3481108/1‑91 (MQ=255) aaCAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTATATTACTTATTGTGattatt > 1:536599/1‑91 (MQ=255) aCAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTATATTACTTATTGTGATTAttt < 1:2406866/91‑1 (MQ=255) aCAATTACAGGCGGAAAGAAATATCTTTCAGGCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTATATTACTTATTGTGATTAttt < 2:711140/91‑1 (MQ=255) ttACAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTATATTACTTATTGTGATTATTTTAcc < 1:1878932/91‑1 (MQ=255) tACAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTATATTACTTATTGTGATTATTTTACCt < 1:1417873/91‑1 (MQ=255) tACAGACTGAAAGATATTTCTTTCAGCCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTATATTACTTATTGTGATTATTTTACCt > 1:3654148/1‑91 (MQ=37) aCAGGCTGAATGAAATATCTTTCAGCCTGTAAAATCATATTCACAATAAGTAATTTCCAAGTCATATTACTTATTGTGATTATTTGACCTa < 2:2373439/91‑1 (MQ=255) aCAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTATATTACTTATTGTGATTATTTTACCTa < 2:2266468/91‑1 (MQ=255) aCAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTATATTACTTATTGTGATTATTTTACCTa > 1:2000610/1‑91 (MQ=255) cAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTATATTACTTATTGTGATTATTTTACCTaa < 2:140318/91‑1 (MQ=255) cAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTATATTACTTATTGTGATTATTTTACCTaa > 2:2811419/1‑91 (MQ=255) cAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTATATTACTTATTGTGATTATTTTACCTaa > 1:2537347/1‑91 (MQ=255) cAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTATATTACTTATTGTGATTATTTTACCTaa < 2:2885500/91‑1 (MQ=255) ggCTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTATATTACTTATTGTGATTATTTTACCTAAGa < 1:2763314/91‑1 (MQ=255) gacTGAAAGATATTTCTTTCAGCCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTATATTACTTATTGTGATTATTTTACCTAAGa > 2:648656/3‑91 (MQ=38) gCTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTATATTACTTATTGTGATTATTTTACCTAAGAc > 1:2629811/1‑91 (MQ=255) cTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTATATTACTTATTGTGATTATTTTACCTAAGACa < 1:1178631/91‑1 (MQ=255) cTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTATATTACTTATTGTGATTATTTTACCTAAGACa < 2:3178985/91‑1 (MQ=255) cTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTATATTACTTATTGTGATTATTTTACCTAAGACa > 1:1372571/1‑91 (MQ=255) cTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTATATTACTTATTGTGATTATTTTACCTAAGACa < 1:2875971/91‑1 (MQ=255) cTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTGACAATAAGTAATTTCCAAGCTATATTACTTATTGTGATTATTTTACCTAAGACa > 1:2167328/1‑91 (MQ=255) tGAGAGAAATATCTTTTAGTCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTATATTACTTATTGTGATTATTTTACCTAAGACAg < 1:3182818/91‑1 (MQ=255) tGAAAGATATTTCTTTCAGCCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTATATTACTTATTGTGATTATTTTACCTAAGACAg > 1:1192963/1‑91 (MQ=38) gaaagataTTTCTTTCAGCCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTATATTACTTATTGTGATTATTTTACCTAAGACAGt > 2:3347368/1‑91 (MQ=39) gaaagataTTTCTTTCAGCCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTATATTACTTATTGTGATTATTTTACCTAAGACAGt > 1:2483064/1‑91 (MQ=39) aaagaaaTATCTTTCAGTCTGTAAAAATATATTGACAATAAGGGATTGCCAAGTTATATTACTTATTGTGATTATTTTACCTAAGACAGTa < 2:3810919/91‑1 (MQ=255) aaTATCTTTCAGTCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTATATTACTTATTGTGCTTATTTTACCTAAGAACGTAGGAGt > 2:2736657/1‑91 (MQ=255) aaTATCTTTCAGTCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTATATTACTTATTGTGATTATTTTACCTAAGACAGTAGGAGt < 1:1143643/91‑1 (MQ=255) aaTATCTTTCAGTCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTATATTACTTATTGTGATTATTTTACCTAAGACAGTAGGAGt > 1:2298679/1‑91 (MQ=255) aaTATCTTTCAGTCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTATATTACTTATTGTGATTATTTTACCTAAGACAGTAGGAGt > 2:234722/1‑91 (MQ=255) aaTATCTTTCAGTCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTATATTACTTATTGTGATTATTTTACCTAAGACAGTAGGAGt < 1:3380290/91‑1 (MQ=255) aaTATCTTTCAGTCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTATATTACTTATTGTGATTATTTTACCTAAGACAGTAGGAGt < 1:918647/91‑1 (MQ=255) atatCTTTCAGTCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTATATTACTTATTGTGATTATTTTACCTAAGACAGTAGGAGtt > 1:3068810/1‑91 (MQ=255) atCTTTCAGTCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTATATTACTTATTGTGATTATTTTACCTAAGACAGTAGGAGttat > 2:2878340/1‑91 (MQ=255) atCTTTCAGTCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTATATTACTTATTGTGATTATTTTACCTAAGACAGTAGGAGttat > 1:3072717/1‑91 (MQ=255) | CTGTAACTACAACAATGGGTCCTGGAGTTAAAATTGATACTGCAAGTTTCAAATAATAAATGATATAAACAATTACAGGCTGAAAGAAATATCTTTCAGTCTGTAAAAATATATTGACAATAAGTAATTTCCAAGTTATATTACTTATTGTGATTATTTTACCTAAGACAGTAGGAGTTAT > USA300TCH1516_ALE/583861‑584041 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |