| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 702,560 | T→A | 7.4% | I118N (ATT→AAT) | nhaK_1 → | Sodium, potassium, lithium and rubidium/H(+) antiporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 702,560 | 0 | T | A | 7.4% | 808.2 / 41.4 | 244 | I118N (ATT→AAT) | nhaK_1 | Sodium, potassium, lithium and rubidium/H(+) antiporter |
| Reads supporting (aligned to +/- strand): ref base T (109/115); new base A (15/3); total (124/120) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.84e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.50e-01 | |||||||||||
Only 100 of 251 total aligned reads displayed.
CATTAGGATTAGTCATTACTACTGTGATAGGTGTAGGTTTATTTATTCATTGGATTTGGCCAGATTTACCTATTGGAGCAGCATTTGCAATTGCTGCCATTCTTTGTCCTACTGATGCAGTAGCAGTGCAAGCAATCACTAAAGGAAAGGTCTTGCCAAAAGGAGCAATGACAATTCTTGA > USA300TCH1516_ALE/702470‑702650 | cATTAGGATTAGTCATTACTACTGTGATAGGTGTAGGTTTATTTATTCATTGGATTTGGCCAGATTTACCTATTGGAGCAGCATTTGCAAt > 2:2211308/1‑91 (MQ=255) aTTAGGATTAGTCATTACTACTGTGATAGGTGTAGGTTTATTTATTCATTGGATTTGGCCAGATTTACCTATTGGAGCAGCATTTGCAAtt > 1:3219817/1‑91 (MQ=255) ttAGGATTAGTCATTACTACTGTGATAGGTGTAGGTTTATTTATTCATTGGATTTGGCCAGATTTACCTATTGGAGCAGCATTTGCAATtg < 2:1248618/91‑1 (MQ=255) aGGATTAGTCATTACTACTGTGATAGGTGTAGGTTTATTTATTCATTGGATTTGGCCAGATTTACCTATTGGAGCAGCATTTGCAATtgct > 2:1237078/1‑91 (MQ=255) ggATTAGTCATTACTACTGTGATAGGTGTAGGTTTATTTATTCATTGGATTTGGCCAGATTTACCTATTGGAGCAGCATTTGCAATtgctg > 1:1267909/1‑91 (MQ=255) ggATTAGTCATTACTACTGTGATAGGTGTAGGTTTATTTATTCATTGGATTTGGCCAGATTTACCTATTGGAGCAGCATTTGCAATtgctg > 2:270586/1‑91 (MQ=255) ggATTAGTCATTACTACTGTGATAGGTGTAGGTTTATTTATTCATTGGATTTGGCCAGATTTACCTATTGGAGCAGCAATTGCAAAtgctg < 1:2517527/91‑1 (MQ=255) gATTAGTCATTACTACTGTGATAGGTGTAGGTTTATTTATTCATTGGATTTGGCCAGATTTACCTATTGGAGCAGCATTTGCAATtgctgc < 2:1155387/91‑1 (MQ=255) ttAGTCATTACTACTGTGATAGGTGTAGGTTTATTTATTCATTGGATTTGGCCAGATTTACCTATTGGAGCAGCATTTGCAATTGCTGCCa < 2:3061756/91‑1 (MQ=255) ttAGTCATTACTACTGTGATAGGTGTAGGTTTATTTATTCATTGGATTTGGCCAGATTTACCTATTGGAGCAGCATTTGCAATTGCTGCCa < 1:2337536/91‑1 (MQ=255) ttAGTCATTACTACTGTGATAGGTGTAGGTTTATTTATTCATTGGATTTGGCCAGATTTACCTATTGGAGCAGCATTTGCAATTGCTGCCa > 2:3783153/1‑91 (MQ=255) tAGTCATTACTACTGTGATAGGTGTAGGTTTATTTATTCATTGGATTTGGCCAGATTTACCTATTGGAGCAGCATTTGCAATTGCTGCCAt < 2:1844626/91‑1 (MQ=255) tCATTACTACTGTGATAGGTGTAGGTTTATTTATTCATTGGATTTGGCCAGATTTACCTATTGGAGCAGCATTTGCAATTGCTGCCATTCt < 1:1705167/91‑1 (MQ=255) cATTACTACTGTGATAGGTGTAGGTTTATTTATTCATTGGATTTGGCCAGATTTACCTATTGGAGCAGCATTTGCAATTGCTGCCATTCtt < 2:697624/91‑1 (MQ=255) aTTACTACTGTGATAGGTGTAGGTTTATTTATTCATTGGATTTGGCCAGATTTACCTATTGGAGCAGCATTTGCAATTGCTGCCATTCttt < 1:3609952/91‑1 (MQ=255) ttACTACTGTGATAGGTGTAGGTTTATTTATTCATTGGATTTGGCCAGATTTACCTATTGGAGCAGCATTTGCAATTGCTGCCATTCTTTg > 1:1463021/1‑91 (MQ=255) actactGTGATAGGTGTAGGTTTATTTATTCATTGGATTTGGCCAGATTTACCTATTGGAGCAGCATTTGCAATTGCTGCCATTCTTTGTc > 1:2047114/1‑91 (MQ=255) actactGTGATAGGTGCAGGTTTATTTATTCATTGGATTTGGCCAGATTTACCTATTGGAGCAGCATTTGCAATTGCTGCCATTCTTTGTc < 2:3038816/91‑1 (MQ=255) ctactGTGATAGGTGTAGGTTTATTTATTCATTGGATTTGGCCAGATTTACCTATTGGAGCAGCATTTGCAATGGCTGCCATTCTTTGTcc < 2:601019/91‑1 (MQ=255) actGTGATAGGTGTAGGTTTATTTATTCATTGGATTTGGCCAGATTTACCTATTGGAGCAGCATTTGCAATTGCTGCCATTCTTTGTCCTa > 2:1061057/1‑91 (MQ=255) actGTGATAGGTGTAGGTTTATTTATTCATTGGATTTGGCCAGATTTACCTATTGGAGCAGCATTTGCAATTGCTGCCATTCTTTGTCCTa > 2:1066886/1‑91 (MQ=255) tgtgATAGGTGTAGGTTTATTTATTCATTGGATTTGGCCAGATTTACCTATTGGAGCAGCATTTGCAATTGCTGCCATTCTTTGTCCTACt < 1:1192754/91‑1 (MQ=255) tgtgATAGGTGTAGGTTTATTTATTCATTGGATTTGGCCAGATTTACCTATTGGAGCAGCATTTGCAATTGCTGCCATTCTTTGTCCTACt > 2:1136718/1‑91 (MQ=255) tgATAGGTGTAGGTTTATTTATTCATTGGATTTGGCCAGATTTACCTATTGGAGCAGCATTTGCAATTGCTGCCATTCTTTGTCCTACTGa > 2:356801/1‑91 (MQ=255) aTAGGTGTAGGTTTATTTATTCATTGGATTTGGCCAGATTTACCTATTGGAGCAGCATTTGCAATTGCTGCCATTCTTTGTCCTACTGATg > 1:853364/1‑91 (MQ=255) tAGGTGTAGGTTTATTTATTCATTGGATTTGGCCAGATTTATCTATTGGAGCAGCATTTGCAATTGCTGCCATTCTTTGTCCTACTGATGc > 2:2299258/1‑91 (MQ=255) tAGGTGTAGGTTTATTTATTCATTGGATTTGGCCAGATTTACCTATTGGAGCAGCATTTGCAATTGCTGCCATTCTTTGTCCTACTGATGc < 1:935012/91‑1 (MQ=255) tAGGTGTAGGTTTATTTATTCATTGGATTTGGCCAGATTTACCTATTCGAGCAGCATTTGCAATTGCTGCCATTCTTCGTCCTACTGATGc > 1:3956517/1‑91 (MQ=255) aGGTGTAGGTTTATTTATTCATTGGATTTGGCCAGATTTACCTATTGGAGCAGCATTTGCAATTGCTGCCATTCTTTGTCCTACTGATGCa < 2:2000776/91‑1 (MQ=255) aGGTGTAGGTTTATTTATTCATTGGATTTGGCCAGATTTACCTATTGGAGCAGCATTTGCAATTGCTGCCATTCTTTGTCCTACTGATGCa > 1:1312427/1‑91 (MQ=255) gtgtAGGTTTATTTATTCATTGGATTTGGCCAGATTTACCTATTGGAGCAGCATTTGCAATTGCTGCCATTCTTTGTCCTACTGATGCAGt > 1:1026154/1‑91 (MQ=255) tgtAGGTTTATTTATTCATTGGATTTGGCCAGATTTACCTATTGGAGCAGCATTTGCAATTGCTGCCATTCTTTGTCCTACTGATGCAGTa > 2:254107/1‑91 (MQ=255) tgtAGGTTTATTTATTCATTGGATTTGGCCAGATTTACCTATTGGAGCAGCATTTGCAATTGCTGCCATTCTTTGTCCTACTGATGCAGTa > 1:1945562/1‑91 (MQ=255) gtAGGTTTATTGATTCATTGGATTTGGCCAGATTTACCTATTGGAGCAGCATTTGCAATTGCTGCCATTCTTTGTCCTACTGATGCAGTAg < 1:3580012/91‑1 (MQ=255) tAGGTTTATTTATTCATTGGATTTGGCCAGATTTACCTATTGGAGCAGCATTTGCAATTGCTGCCATTCTTTGTCCTACTGATGCAGTAGc > 2:2868553/1‑91 (MQ=255) ggTTTATTTATTCATTGGATTTGGCCAGATTTACCTATTGGAGCAGCATTTGCAATTGCTGCCATTCTTTGTCCTACTGATGCAGTAGCAg < 1:1671101/91‑1 (MQ=255) gTTTATTTATTCATTGGATTTGGCCAGATTTACCTATTGGAGCAGCATTTGCAATTGCTGCCATTCTTTGTCCTACTGATGCAGTAGCAGt < 2:1604805/91‑1 (MQ=255) ttatttatTCATTGGATTTGGCCAGATTTACCTATTGGAGCAGCATTTGCAATTGCTGCCATTCTTTGTCCTACTGATGCAGTAGCAGTgc < 1:153165/91‑1 (MQ=255) atttattCATTGGATTTGGCCAGATTTACCTATTGGAGCAGCATTTGCAATTGCTGCCATTCTTTGTCCTACTGATGCAGTAGCAGTgcaa > 1:3931288/1‑91 (MQ=255) atttattCATTGGATTTGGCCAGATTTACCTATTGGAGCAGCATTTGCAATTGCTGCCATTCTTTGTCCTACTGATGCAGTAGCAGTgcaa < 1:2326774/91‑1 (MQ=255) atttattCATTGGATTTGGCCAGATTTACCTATTGGAGCAGCATTTGCAATTGCTGCCATTCTTTGTCCTACTGATGCAGTAGCAGTgcaa > 1:680319/1‑91 (MQ=255) atttattCATTGGATTTGGCCAGATTTACCTATTGGAGCAGCATTTGCAATTGCTGCCATTCTTTGTCCTACGGATGCAGTAGCCGTgcaa > 2:3430009/1‑91 (MQ=255) attCATTGGATTTGGCCAGATTTACCTATTGGAGCAGCATTTGCAATTGCTGCCATTCTTTGTCCTACTGATGCAGTAGCAGTgcaagcaa < 1:3364416/91‑1 (MQ=255) ttCATTGGATTTGGCCAGATTTACCTATTGGAGCAGCATTTGCAATTGCTGCCATTCTTTGTCCTACTGATGCAGTAGCAGTGCAAGCAAt > 2:2984035/1‑91 (MQ=255) aTTGGATTTGGCCAGATTTACCTATTGGAGCAGCATTTGCAATTGCTGCCATTCTTTGTCCTACTGATGCAGTAGCAGTGCAAGCAATCAc < 2:3730422/91‑1 (MQ=255) ttGGATTTGGCCAGATTTACCTATTGGAGCAGCATTTGCAATTGCTGCCATTCTTTGTCCTACTGATGCAGTAGCAGTGCAAGCAATCACt > 1:177126/1‑91 (MQ=255) ggATTTGGCCAGATTTACCTATTGGAGCAGCATTTGCAATTGCTGCCATTCTTTGTCCTACTGATGCAGTAGCAGTGCAAGCAATCACTaa < 1:2624106/91‑1 (MQ=255) tttGGCCAGATTTACCTATTGGAGCAGCATTTGCAATTGCTGCCATTCTTTGTCCTACTGATGCAGTAGCAGTGCAAGCAATCACTaaagg < 1:98383/91‑1 (MQ=255) ttGGCCAGATTTACCTATTGGAGCAGCATTTGCAATTGCTGCCATTCTTTGTCCTACTGATGCAGTAGCAGTGCAAGCAATCACTaaagga < 1:1404744/91‑1 (MQ=255) tGGCCAGATTTACCTATTGGAGCAGCATTTGCAATTGCTGCCATTCTTTGTCCTACTGATGCAGTAGCAGTGCAAGCAATCACTaaaggaa > 2:2464427/1‑91 (MQ=255) tGGCCAGATTTACCTATTGGAGCAGCATTTGCAATTGCTGCCATTCTTTGTCCTACTGATGCAGTAGCAGTGCAAGCAATCACTaaaggaa > 1:1719725/1‑91 (MQ=255) tGGCCAGATTTACCTATTGGAGCAGCATTTGCAAGTGCTGCCATTCTTTGTCCTACTGATGCAGTAGCAGTGCAAGCAATCACTaaaggaa < 2:1488185/91‑1 (MQ=255) gCCAGATTTACCTATTGGAGCAGCATTTGCAATTGCTGCCATTCTTTGTCCTACTGATGCAGTAGCAGTGCAAGCAATCACTaaaggaaag > 1:57736/1‑91 (MQ=255) aGATTTACCTATTGGAGCAGCATTTGCAATTGCTGCCATTCTTTGTCCTACTGATGCAGTAGCAGTGCAAGCAATCACTAAAGGAAAGGTc > 2:899415/1‑91 (MQ=255) aGATTTACCTATTGGAGCAGCATTTGCAATTGCTGCCATTCTTTGTCCTACTGATGCAGTAGCAGTGCAAGCAATCACTAAAGGAAAGGTc > 1:464596/1‑91 (MQ=255) gATTTACCTATTGGAGCAGCATTTGCAATTGCTGCCATTCTTTGTCCTACTGATGCAGTAGCAGTGCAAGCAATCACTAAAGGAAAGGTCt < 1:3193626/91‑1 (MQ=255) tttACCTATTGGAGCAGCATTTGCAATTGCTGCCATTCTTTGTCCTACTGATGCAGTAGCAGTGCAAGCAATCACTAAAGGAAAGGTCTTg < 1:11558/91‑1 (MQ=255) ttACCTATTGGAGCAGCATTTGCAATTGCTGCCATTCTTTGTCCTACTGATGCAGTAGCAGTGCAAGCAATCACTAAAGGAAAGGTCTTGc < 2:1080883/91‑1 (MQ=255) ttACCTATTGGAGCAGCATTTGCAATTGCTGCCATTCTTTGTCCTACTGATGCAGTAGCAGTGCAAGCAATCACTAAAGGAAAGGTCTTGc < 1:2430317/91‑1 (MQ=255) tACCTATTGGAGCAGCATTTGCAATTGCTGCCATTCTTTGTCCTACTGATGCAGTAGCAGTGCAAGCAATCACTAAAGGAAAGGTCTTGcc < 2:1734549/91‑1 (MQ=255) tACCTATTGGAGCAGCATTTGCAATTGCTGCCATTCTTTGTCCTACTGATGCAGTAGCAGTGCAAGCAATCACTAAAGGAAAGGTCTTGcc < 1:2801907/91‑1 (MQ=255) aCCTATTGGAGCAGCATTTGCAATTGCTGCCATTCTTTGTCCTACTGATGCAGTAGCAGTGCAAGCAATCACTAAAGGAAAGGTCTTGCCa > 1:2145671/1‑91 (MQ=255) aCCTATTGGAGCAGCATTTGCAATTGCTGCCATTCTTTGTCCTACTGATGCAGTAGCAGTGCAAGCAATCACTAAAGGAAAGGTCTTGCCa > 2:3173391/1‑91 (MQ=255) aCCTATTGGAGCAGCATTTGCAATTGCTGCCATTCTTTGTCCTACTGATGCAGTAGCAGTGCAAGCAATCACTAAAGGAAAGGTCTTGCCa > 1:820342/1‑91 (MQ=255) ccTATTGGAGCAGCATTTGCAATTGCTGCCATTCTTTGTCCTACTGATGCAGTAGCAGTGCAAGCAATCACTAAAGGAAAGGTCTTGCCaa > 2:3348364/1‑91 (MQ=255) ccTATTGGAGCAGCATTTGCAATTGCTGCCATTCTTTGTCCTACTGATGCAGTAGCAGTGCAAGCAATCACTAAAGGAAAGGTCTTGCCaa > 2:3075924/1‑91 (MQ=255) ccTATTGGAGCAGCATTTGCAATTGCTGCCATTCTTTGTCCTACTGATGCAGTAGCAGTGCAAGCAATCACTAAAGGAAAGGTCTTGCCaa < 1:2842030/91‑1 (MQ=255) cTATTGGAGCAGCTTTTGCAATTGCTGCCCTTCTTTGTCCTACTGATGCAGTATCAGTGCAAGCAATCACTAAAGGAAAGGTCTTGCCaaa > 2:243291/1‑91 (MQ=255) cTATTGGAGCAGCATTTGCAATTGCTGCCATTCTTTGTCCTACTGATGCAGTAGCAGTGCAAGCAATCACTAAAGGAAAGGTCTTGCCaaa > 2:2798599/1‑91 (MQ=255) tATTGGAGTAGCATTTGCAATTGCTGCCATTCTTTGTCCTACTGATGCAGTAGCAGTGCAAGCAATCACTAAAGGAAAGGTCTTGCCaaaa < 1:2946888/91‑1 (MQ=255) tATCGGAGCAGAATATGCAATTGCTGCCATTACTAGTCTTACTGATGCAGCCGCAGAACAACCAATCCCTAAAGGAAAGGTCCTGCCaaaa > 2:404918/1‑91 (MQ=255) ggAGCAGCATTTGCAATTGCTGCCATTCTTTGTCCTACTGATGCAGTAGCAGTGCAAGCAATCACTAAAGGAAAGGTCTTGCCAAAAGGAg < 1:904203/91‑1 (MQ=255) ggAGCAGCATTTGCAATTGCTGCCATTCTTTGTCCTACTGATGCAGTAGCAGTGCAAGCAATCACTAAAGGAAAGGTCTTGCCAAAAGGAg > 1:3772262/1‑91 (MQ=255) gcagcaTTTGCAATTGCTGCCATTCTTTGTCCTACTGATGCAGTAGCAGTGCAAGCAATCACTAAAGGAAAGGTCTTGCCAAAAGGAGCaa > 2:3027445/1‑91 (MQ=255) gcagcaTTTGCAATTGCTGCCATTCTTTGTCCTACTGATGCAGTAGCAGTGCAAGCAATCACTAAAGGAAAGGTCTTGCCAAAAGGAGCaa > 1:508431/1‑91 (MQ=255) gcagcaTTTGCAATTGCTGCCATTCTTTGTCCTACTGATGCAGTAGCAGTGCAAGCAATCACTAAAGGAAAGGTCTTGCCAAAAGGAGCaa > 2:3396483/1‑91 (MQ=255) cagcaTTTGCAATTGCTGCCATTCTTTGTCCTACTGATGCAGTAGCAGTGCAAGCAATCACTAAAGGAAAGGTCTTGCCAAAAGGAGCAAt < 1:547458/91‑1 (MQ=255) cagcaTTTGCAATTGCTGCCATTCTTTGTCCTACTGATGCAGTAGCAGTGCAAGCAATCACTAAAGGAAAGGTCTTGCCAAAAGGAGCAAt < 2:1933446/91‑1 (MQ=255) cagcaTTTGCAATTGCTGCCATTCTTTGTCCTACTGATGCAGTAGCAGTGCAAGCAATCACTAAAGGAAAGGTCTTGCCAAAAGGAGCAAt > 1:1628365/1‑91 (MQ=255) cagcaTTTGCAATTGCTGCCATTCTTTGTCCTACTGATGCAGTAGCAGTGCAAACAATCACTAAAGGAAAGGTCTTGCCAAAAGGAGCAAt > 1:2655729/1‑91 (MQ=255) agcaTTTGCAATTGCTGCCATTCTTTGTCCTACTGATGCAGTAGCAGTGCAAGCAATCACTAAAGGAAAGGTCTTGCCAAAAGGAGCAATg < 2:810316/91‑1 (MQ=255) gcaattGCAAATGCTGCCATTCTTTGTCCTACTGATGCAGTAGCAGTGCAAGCAATCACTAAAGGAAAGGTCTTGCCAAAAGGAGCAATGa > 1:2063453/5‑91 (MQ=255) caTTTGCAATTGCTGCCATTCTTTGTCCTACTGATGCAGTAGCAGTGCAAGCAATCACTAAAGGAAAGGTCTTGCCAAAAGGAGCAATGAc > 2:1446206/1‑91 (MQ=255) aTTTGCAATTGCTGCCATTCTTTGTCCTACTGATGCAGTAGCAGTGCAAGCAATCACTAAAGGAAAGGTCTTGCCAAAAGGAGCAATGACa < 1:413236/91‑1 (MQ=255) aTTTGCAATTGCTGCCATTCTTTGTCCTACTGATGCAGTAGCAGTGCAAGCAATCACTAAAGGAAAGGTCTTGCCAAAAGGAGCAATGACa < 2:1742319/91‑1 (MQ=255) attGCAAATGCTGCCATTCTTTGTCCTACTGATGCAGTAGCAGTGCAAGCAATCACTAAAGGAAAGGTCTTGCCAAAAGGAGCAATGACaa > 2:3517157/2‑91 (MQ=255) ttGCAATTGCTGCCATTCTTTGTCCTACTGATGCAGTAGCAGTGCAAGCAATCACTAAAGGAAAGGTCTTGCCAAAAGGAGCAATGACAAt < 2:1694362/91‑1 (MQ=255) ttGCAATTGCTGCCATTCTTTGTCCTACTGATGCAGTAGCAGTGCAAGCAATCACTAAAGGAAAGGTCTTGCCAAAAGGAGCAATGACAAt < 2:3254098/91‑1 (MQ=255) ttGCAATTGCTGCCATTCTTTGTCCTACTGATGCAGTAGCAGTGCAAGCAATCACTAAAGGAAAGGTCTTGCCAAAAGGAGCAATGACAAt > 2:492680/1‑91 (MQ=255) ttGCAATTGCTGCCATTCTTTGTCCTACTGATGCAGTAGCAGTGCAAGCAATCACTAAAGGAAAGGTCTTGCCAAAAGGAGCAATGACAAt > 2:1951515/1‑91 (MQ=255) ttGCAAATGCTGCCATTCTTTGTCCTACTGATGCAGTAGCAGTGCAAGCAATCACTAAAGGAAAGGTCTTGCCAAAAGGAGCAATGACAAt > 2:1528762/1‑91 (MQ=255) ttGCAAATGCTGCCATTCTTTGTCCTACTGATGCAGTAGCAGTGCAAGCAATCACTAAAGGAAAGGTCTTGCCAAAAGGAGCAATGACAAt > 1:1057360/1‑91 (MQ=255) ttGCAAATGCTGCCATTCTTTGTCCTACTGATGCAGTAGCAGTGCAAGCAATCACTAAAGGAAAGGTCTTGCCAAAAGGAGCAATGACAAt > 1:256867/1‑91 (MQ=255) tGCAATTGCTGCCATTCTTTGTCCTACTGATGCAGTAGCAGTGCAAGCAATCACTAAAGGAAAGGTCTTGCCAAAAGGAGCAATGACAAtt > 1:1918737/1‑91 (MQ=255) tGCAATTGCTGCCATTCTTTGTCCTACTGATGCAGTAGCAGTGCAAGCAATCACTAAAGGAAAGGTCTTGCCAAAAGGAGCAATGACAAtt < 1:2175232/91‑1 (MQ=255) tGCAATTGCTGCCATTCTTTGTCCTACTGATGCAGTAGCAGTGCAAGCAATCACTAAAGGAAAGGTCTTGCCAAAAGGAGCAATGACAAtt < 2:2112185/91‑1 (MQ=255) gCAAATGCTGCCATTCTTTGTCCTACTGATGCAGTAGCAGTGCAAGCAATCACTAAAGGAAAGGTCTTGCCAAAAGGAGCAATGACAATTc > 2:1412119/1‑91 (MQ=255) aTTGCTGCCATTCTTTGTCCTACTGATGCAGTAGCAGTGCAAGCAATCACTAAAGGAAAGGTCTTGCCAAAAGGAGCAATGACAATTCTTg < 2:3102319/91‑1 (MQ=255) ttGCTGCCATTCTTTGTCCTACTGATGCAGTAGCAGTGCAAGCAATCACTAAAGGAAAGGTCTTGCCAAAAGGAGCAATGACAATTCTTGa > 2:387367/1‑91 (MQ=255) ttGCTGCCATTCTTTGTCCTACTGATGCACTAGCAGTGCAAGCAATTACTAAAGGAAAGGTCTTGCCAAAAGGAGCAATGACAATTCTTGa < 1:3167982/91‑1 (MQ=255) | CATTAGGATTAGTCATTACTACTGTGATAGGTGTAGGTTTATTTATTCATTGGATTTGGCCAGATTTACCTATTGGAGCAGCATTTGCAATTGCTGCCATTCTTTGTCCTACTGATGCAGTAGCAGTGCAAGCAATCACTAAAGGAAAGGTCTTGCCAAAAGGAGCAATGACAATTCTTGA > USA300TCH1516_ALE/702470‑702650 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |