| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | USA300TCH1516_ALE | 779,970 | G→A | 6.6% | intergenic (+26/+46) | csbB → / ← saeS | Putative glycosyltransferase CsbB/Histidine protein kinase SaeS |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | USA300TCH1516_ALE | 779,970 | 0 | G | A | 6.6% | 854.4 / 30.3 | 265 | intergenic (+26/+46) | csbB/saeS | Putative glycosyltransferase CsbB/Histidine protein kinase SaeS |
| Reads supporting (aligned to +/- strand): ref base G (113/134); new base A (10/8); total (123/142) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.69e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
Only 100 of 277 total aligned reads displayed.
AAGCTACAAATCTTTCAAGTCTTGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTTGTGTAATGTTACAGTCATCGTAGT > USA300TCH1516_ALE/779880‑780060 | aaGCTACAAATGTTTCAAGTCTTGAAAATAATGAGAAATATAGCAATAAAGTTTATTTTAAATATATAAAAAAAGAAGCCCTCATTAATgg < 2:2860536/91‑1 (MQ=255) gCTACAAATCTTTCAAGTCTTGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGa < 1:120228/91‑1 (MQ=255) gCTACAAATCTTTCAAGTCTTGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGa < 1:1502373/91‑1 (MQ=255) cAAATCTTTCAAGTCTTGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGctt > 2:577957/1‑91 (MQ=255) aaaTCTTTCAAGTCTTGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCTCCCATTAATGAGGGcttc < 1:2956082/91‑1 (MQ=37) aaTCTTTCAAGTCTTGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGcttct > 2:3345977/1‑91 (MQ=255) aaTCTTTCAAGTCTTGAAAATGATGAGAAGAATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGcttct < 2:1204860/91‑1 (MQ=255) aTCTTTCAAGTCTTGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGcttctt > 1:1333465/1‑91 (MQ=255) tCTTTCAAGTCTTGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCttt < 1:438897/91‑1 (MQ=255) tCAAGTCTTGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAg < 2:979108/91‑1 (MQ=255) aaGTCTTGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTc < 1:3535689/91‑1 (MQ=255) aGTCTTGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCt < 2:904138/91‑1 (MQ=255) aGTCTTGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCt > 2:3643360/1‑91 (MQ=255) gTCTTGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCtt < 1:567482/91‑1 (MQ=255) tCTTGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCttt < 2:3166192/91‑1 (MQ=255) tCTTGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCttt > 1:664263/1‑91 (MQ=255) gttGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTg < 2:3921471/90‑1 (MQ=255) cTTCAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTg < 1:3061746/91‑1 (MQ=255) ttGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGc < 1:1710587/91‑1 (MQ=255) ttGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGc > 1:1289620/1‑91 (MQ=255) gAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCat < 2:2818436/91‑1 (MQ=255) gAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCat < 1:2335105/91‑1 (MQ=255) gAAAATGATGAGAAGGATACCCATAAAGTTTATTATAAATAAAAAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCat < 2:3261791/91‑1 (MQ=255) aaaaTGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCatt < 2:2573264/91‑1 (MQ=255) aaaTGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCattt < 2:2677740/91‑1 (MQ=255) atgatgAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCatttta > 2:1876710/1‑91 (MQ=255) tgatgaGAAGGATACCCATAAAGTTTATTCTAGATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCattttat < 2:2539525/91‑1 (MQ=255) tgatgaGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCattttat > 1:3320121/1‑91 (MQ=255) tgatgaGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCattttat < 2:2539037/91‑1 (MQ=255) atgaGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCattttattt < 2:3054198/91‑1 (MQ=255) atgaGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCattttattt > 2:3278683/1‑91 (MQ=255) tgaGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCattttatttt > 1:3391899/1‑91 (MQ=255) gagaAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCAttttatttta > 2:1263300/1‑91 (MQ=255) gagaAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCAttttatttta > 1:2046004/1‑91 (MQ=255) agaAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATtttattttat < 2:1291922/91‑1 (MQ=255) agaAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATtttattttat < 2:1292244/91‑1 (MQ=255) gaAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCattttatttataa < 2:2194705/91‑5 (MQ=255) gaAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTtata > 1:179280/1‑91 (MQ=255) gaAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTtata < 1:852400/91‑1 (MQ=255) aaGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTataa < 1:1962066/91‑1 (MQ=255) aGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTataaa < 2:1115247/91‑1 (MQ=255) ggATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTataaat < 1:48011/91‑1 (MQ=255) gATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTattaatg > 2:1854017/1‑90 (MQ=255) gATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTataaata < 1:3417237/91‑1 (MQ=255) gATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTataaata > 1:1325796/1‑91 (MQ=255) gATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTGAGTCTTTGCATTTTATTTTataaata < 2:2234821/91‑1 (MQ=255) aCCCATAGAGTTGATTGTAAATGAACAAAAAAAGAAGCCCTCATTAATGGGTGCTTCTTTTTAGTCTTTGTATTTTATTTTATaaataaat < 2:1174581/91‑1 (MQ=255) cccATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATc > 2:77447/1‑91 (MQ=255) cccATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATc < 2:356583/91‑1 (MQ=255) cccATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATc < 1:1506017/91‑1 (MQ=255) ccATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCg < 2:3729416/91‑1 (MQ=255) cATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCgg < 1:289596/91‑1 (MQ=255) cATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCgg < 1:1872315/91‑1 (MQ=255) aGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTAt < 2:182733/91‑1 (MQ=255) aGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTACAAATAAATCGGATTAt > 2:3789413/1‑91 (MQ=255) gTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATg < 1:214432/91‑1 (MQ=255) ttATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGAc < 2:85917/91‑1 (MQ=255) ttATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGAc > 1:1597962/1‑91 (MQ=255) ttATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGAc < 1:1081643/91‑1 (MQ=255) aTTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGt > 1:1739243/1‑91 (MQ=255) aTTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGt > 2:108062/1‑91 (MQ=255) ttaaataaaCAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAAt < 2:3926741/90‑1 (MQ=255) aataaaCAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTc > 1:246403/1‑91 (MQ=255) ataaaCAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCt < 1:933332/91‑1 (MQ=255) ataaaCAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCt < 2:2525999/91‑1 (MQ=255) aaaCAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTaa > 1:2774213/1‑91 (MQ=255) aaCAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAAt < 1:1114257/91‑1 (MQ=255) aaCAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAAt < 1:3324652/91‑1 (MQ=255) aaCAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAAt > 2:2344216/1‑91 (MQ=255) aCAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAAtt > 2:1507440/1‑91 (MQ=255) cAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAAttt < 1:1744194/91‑1 (MQ=255) cAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAAttt > 2:2021976/1‑91 (MQ=255) aaaaaaaGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTtg < 1:296679/91‑1 (MQ=255) aaaaaaGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTtgt < 1:2661255/91‑1 (MQ=255) aaaaaGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTtgtg > 2:1545327/1‑91 (MQ=255) aaaaaGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTtgtg > 2:225078/1‑91 (MQ=255) aagaagCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTTGTGTaa > 1:2482566/1‑91 (MQ=255) agaagCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTTGTGTAAt > 1:1394927/1‑91 (MQ=255) agCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTTGTGTAATGtt > 1:732833/1‑91 (MQ=255) agCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTTGTGTAATGtt > 1:1787449/1‑91 (MQ=255) agCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTTGTGTAATGtt > 2:2636068/1‑91 (MQ=255) agCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTTGTGTAATGtt > 2:68885/1‑91 (MQ=255) agCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTTGTGTAATGtt < 2:206503/91‑1 (MQ=255) agCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTTGTGTAATGtt > 2:1377524/1‑91 (MQ=255) agCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTTGTGCAATGtt < 1:3078364/91‑1 (MQ=255) cccTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTTGTGTAATGTTAc < 2:1417443/91‑1 (MQ=255) tcccATTAATGAGGGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTTGTGTAATGTTACa > 2:3002687/4‑91 (MQ=39) tcccATTAATGAGGGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTTGTGTAATGTTACa > 2:1888424/4‑91 (MQ=39) cccATTAATGAGGGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTTGTGTAATGTTACAg > 2:3210435/3‑91 (MQ=255) tCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATTAATCGGATTATGACGTAATGTCTAATTTGTGTAATGTTACAGt < 2:3046620/91‑1 (MQ=255) ccATTAATGAGGGCTTCTCTCTAGTCTTTGCACTTTACTGTCTAAATCAATCGGATTATGACGTAATGTCTAGTTTGTGTAATGTCACAGt > 1:1432138/2‑91 (MQ=255) cATTAATGAGGGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTTGTGTAATGTTACAGTc > 1:3827932/1‑91 (MQ=255) aTTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTTGTGTAATGTTACAGTCa < 1:2632026/91‑1 (MQ=255) aTTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTTGTGTAATGTTACAGTCa > 1:3622088/1‑91 (MQ=255) ttAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTTGTGTAATGTTACAGTCAt < 2:389486/91‑1 (MQ=255) ttAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTTGTGTAATGTTACAGTCAt < 2:474920/91‑1 (MQ=255) tGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTTGTGTAATGTTACAGTCATCGTa < 1:3896063/91‑1 (MQ=255) gggAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTTGTGTAATGTTACAGTCATCGTAg < 2:1929848/91‑1 (MQ=255) gggAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTTGTGTAATGTTACAGTCATCGTAg < 2:25174/91‑1 (MQ=255) ggAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTTGTGTAATGTTACAGTCATCGTAGt > 1:2823465/1‑91 (MQ=255) | AAGCTACAAATCTTTCAAGTCTTGAAAATGATGAGAAGGATACCCATAAAGTTTATTCTAAATAAACAAAAAAAGAAGCCCTCATTAATGGGAGCTTCTTTTTAGTCTTTGCATTTTATTTTATAAATAAATCGGATTATGACGTAATGTCTAATTTGTGTAATGTTACAGTCATCGTAGT > USA300TCH1516_ALE/779880‑780060 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |